Genomic map of Staphylococcus virus 108PVL (Staphylococcus aureus bacteriophage phiPVL(108)) (NC_008689)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_008689
Definition
Staphylococcus phage phiPVL108, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Biseptimavirus.
DB of origin
REFSEQ
Length
44857
Host Name
Staphylococcus aureus
Host domain
Bacteria
Is prophage?
undef
Number of proteins
59
%GC
33.46
Number of singletons
3
Number of paralogs
1

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_918949.1 NC_008689_p59 hypothetical protein phrog_936 unknown function unknown function 1 44426 44611
YP_918919.1 NC_008689_p29 hypothetical protein phrog_742 acetyltransferase other 1 14807 15178
YP_918897.1 NC_008689_p7 cro-like repressor phrog_3 transcriptional repressor transcription regulation 1 4314 4556
YP_918930.1 NC_008689_p40 prohead protease phrog_80 head maturation protease head and packaging 1 21973 22557
YP_918904.1 NC_008689_p14 DNA-binding protein phrog_534 DNA binding protein DNA, RNA and nucleotide metabolism 1 6967 7230
YP_918948.1 NC_008689_p58 Panton-Valentine leukocidin chain F precursor phrog_965 Panton-Valentine leukocicin DNA, RNA and nucleotide metabolism 1 43200 44177
YP_918937.1 NC_008689_p47 hypothetical protein phrog_187 head-tail adaptor connector 1 26522 26968
YP_918915.1 NC_008689_p25 hypothetical protein phrog_433 unknown function unknown function 1 13351 13572
YP_918899.1 NC_008689_p9 transcriptional regulator phrog_13687 transcriptional regulator transcription regulation 1 5337 5753
YP_918893.1 NC_008689_p3 hypothetical protein singleton unknown function unknown function 1 2094 2321
YP_918932.1 NC_008689_p42 DNA packaging protein phrog_40 head-tail adaptor Ad1 connector 1 24095 24427
YP_918946.1 NC_008689_p56 transposase phrog_8928 unknown function unknown function 1 40249 41895
YP_918944.1 NC_008689_p54 holin phrog_263 holin lysis 1 38181 38483
YP_918925.1 NC_008689_p35 hypothetical protein phrog_229 MazG-like pyrophosphatase other 1 17405 17857
YP_918931.1 NC_008689_p41 capsid protein phrog_10 major head protein head and packaging 1 22645 23892
YP_918941.1 NC_008689_p51 hypothetical protein phrog_202 distal tail protein Dit tail 1 31859 33349
YP_918911.1 NC_008689_p21 hypothetical protein phrog_2232 unknown function unknown function -1 10702 11559
YP_918900.1 NC_008689_p10 hypothetical protein phrog_10914 unknown function unknown function 1 5830 6069
YP_918909.1 NC_008689_p19 single strand DNA binding protein phrog_378 single strand DNA binding protein DNA, RNA and nucleotide metabolism 1 9361 9912
YP_918940.1 NC_008689_p50 tail length tape measure protein2 phrog_4070 tail length tape measure protein tail 1 28527 31859
YP_918939.1 NC_008689_p49 tail length tape measure protein1 phrog_4704 tail length tape measure protein tail 1 27206 28522
YP_918947.1 NC_008689_p57 Panton-Valentine leukocidin chain S precursor phrog_965 Panton-Valentine leukocicin DNA, RNA and nucleotide metabolism 1 42251 43198
YP_918926.1 NC_008689_p36 phage endonuclease phrog_144 HNH endonuclease DNA, RNA and nucleotide metabolism 1 17857 18216
YP_918892.1 NC_008689_p2 phage integrase phrog_1 integrase integration and excision -1 383 1588
YP_918918.1 NC_008689_p28 hypothetical protein phrog_258 virulence associated other 1 14550 14798
YP_918923.1 NC_008689_p33 hypothetical protein phrog_386 unknown function unknown function 1 16615 16815
YP_918914.1 NC_008689_p24 hypothetical protein singleton unknown function unknown function 1 13240 13338
YP_918901.1 NC_008689_p11 hypothetical protein phrog_9877 unknown function unknown function -1 6023 6346
YP_918912.1 NC_008689_p22 phage replication protein phrog_428 replication initiation protein DNA, RNA and nucleotide metabolism 1 11624 12394
YP_918913.1 NC_008689_p23 dna replication protein phrog_50 DnaC-like helicase loader DNA, RNA and nucleotide metabolism 1 12404 13183
YP_918945.1 NC_008689_p55 truncated amidase phrog_489 endolysin lysis 1 38494 39948
YP_918916.1 NC_008689_p26 hypothetical protein phrog_190 Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 13583 13987
YP_918921.1 NC_008689_p31 dUTPase phrog_135 dUTPase DNA, RNA and nucleotide metabolism 1 15394 15939
YP_918936.1 NC_008689_p46 hypothetical protein phrog_88 major tail protein tail 1 25504 26457
YP_918938.1 NC_008689_p48 hypothetical protein phrog_15504 unknown function unknown function 1 27043 27150
YP_918906.1 NC_008689_p16 hypothetical protein phrog_401 unknown function unknown function 1 7780 8064
YP_918908.1 NC_008689_p18 hypothetical protein phrog_124 Sak4-like ssDNA annealing protein DNA, RNA and nucleotide metabolism 1 8558 9331
YP_918894.1 NC_008689_p4 hypothetical protein phrog_1776 unknown function unknown function -1 2521 2916
YP_918902.1 NC_008689_p12 hypothetical protein phrog_6623 unknown function unknown function 1 6396 6722
YP_918934.1 NC_008689_p44 hypothetical protein phrog_5 tail completion or Neck1 protein connector 1 24749 25126
YP_918907.1 NC_008689_p17 hypothetical protein phrog_253 Mu Gam-like end protection DNA, RNA and nucleotide metabolism 1 8079 8558
YP_918924.1 NC_008689_p34 hypothetical protein phrog_1058 unknown function unknown function 1 16838 17290
YP_918928.1 NC_008689_p38 phage terminase-large subunit phrog_9 terminase large subunit head and packaging 1 18816 20510
YP_918929.1 NC_008689_p39 portal protein phrog_12 portal protein head and packaging 1 20655 21980
YP_918922.1 NC_008689_p32 hypothetical protein phrog_555 unknown function unknown function 1 16237 16473
YP_918891.1 NC_008689_p1 hypothetical protein singleton unknown function unknown function 1 80 340
YP_918903.1 NC_008689_p13 hypothetical protein phrog_4309 unknown function unknown function 1 6755 6937
YP_918927.1 NC_008689_p37 phage terminase-small subunit phrog_83 terminase small subunit head and packaging 1 18346 18813
YP_918896.1 NC_008689_p6 cI-like repressor phrog_4 transcriptional repressor transcription regulation -1 3434 4150
YP_918943.1 NC_008689_p53 hypothetical protein phrog_1747 unknown function unknown function 1 37338 37625
YP_918917.1 NC_008689_p27 hypothetical protein phrog_201 Panton-Valentine leukocicin DNA, RNA and nucleotide metabolism 1 14178 14549
YP_918910.1 NC_008689_p20 hypothetical protein phrog_398 unknown function unknown function 1 9925 10596
YP_918920.1 NC_008689_p30 hypothetical protein phrog_266 unknown function unknown function 1 15171 15419
YP_918935.1 NC_008689_p45 hypothetical protein phrog_78 tail terminator connector 1 25123 25503
YP_918942.1 NC_008689_p52 structural protein phrog_1786 minor head protein head and packaging 1 33473 37147
YP_918933.1 NC_008689_p43 hypothetical protein phrog_25 head closure Hc1 connector 1 24414 24749
YP_918898.1 NC_008689_p8 antirepressor phrog_63 anti-repressor Ant transcription regulation 1 4572 5324
YP_918905.1 NC_008689_p15 hypothetical protein phrog_983 unknown function unknown function 1 7498 7779
YP_918895.1 NC_008689_p5 lipoprotein phrog_1759 unknown function unknown function -1 2945 3379