| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_008694 |
Definition |
Yersinia phage Berlin, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Autographiviridae; Studiervirinae; Berlinvirus; Yersinia virus Berlin. |
DB of origin |
REFSEQ |
Length |
38564 |
Host Name |
Yersinia pestis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
45 |
%GC |
47.18 |
Number of singletons |
2 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_919022.1 | NC_008694_p40 | phage lambda Rz-like lysis protein | phrog_1327 | Rz-like spanin | lysis | 1 | 34254 | 34703 |
| YP_919003.1 | NC_008694_p21 | Phage T7 superfamily gene 5.5 protein | phrog_1452 | Gp5.5-like host HNS inhibition | moron, auxiliary metabolic gene and host takeover | 1 | 14938 | 15222 |
| YP_918984.1 | NC_008694_p2 | hypothetical protein | phrog_27091 | unknown function | unknown function | 1 | 978 | 1208 |
| YP_918994.1 | NC_008694_p12 | endonuclease I | phrog_945 | endonuclease | DNA, RNA and nucleotide metabolism | 1 | 8647 | 9099 |
| YP_919001.1 | NC_008694_p19 | DNA polymerase | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 12124 | 14918 |
| YP_918996.1 | NC_008694_p14 | DNA primase/helicase | phrog_239 | DNA primase/helicase | DNA, RNA and nucleotide metabolism | 1 | 9720 | 11432 |
| YP_919021.1 | NC_008694_p39 | DNA packaging protein, small subunit | phrog_1351 | terminase small subunit | head and packaging | 1 | 33886 | 34155 |
| YP_918989.1 | NC_008694_p7 | ATP-dependent DNA ligase | phrog_114 | ATP-dependent DNA ligase | DNA, RNA and nucleotide metabolism | 1 | 5782 | 6810 |
| YP_919000.1 | NC_008694_p18 | hypothetical protein | phrog_2254 | unknown function | unknown function | 1 | 11733 | 12029 |
| YP_918998.1 | NC_008694_p16 | hypothetical protein | phrog_5140 | unknown function | unknown function | 1 | 11152 | 11514 |
| YP_918997.1 | NC_008694_p15 | Helicase | phrog_239 | DNA primase/helicase | DNA, RNA and nucleotide metabolism | 1 | 9921 | 11432 |
| YP_918986.1 | NC_008694_p4 | T3/T7-like RNA polymerase | phrog_414 | RNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 2480 | 5131 |
| YP_918993.1 | NC_008694_p11 | single-stranded DNA-binding protein | phrog_112 | Gp2.5-like ssDNA binding protein and ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 7920 | 8627 |
| YP_919020.1 | NC_008694_p38 | type II holin | phrog_920 | holin | lysis | 1 | 33687 | 33893 |
| YP_919023.1 | NC_008694_p41 | hypothetical protein | phrog_27102 | unknown function | unknown function | 1 | 34636 | 35292 |
| YP_919019.1 | NC_008694_p37 | tail fiber protein | phrog_4242 | tail fiber protein | tail | 1 | 31925 | 33634 |
| YP_919006.1 | NC_008694_p24 | exonuclease | phrog_107 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 15604 | 16518 |
| YP_919004.1 | NC_008694_p22 | hypothetical protein | phrog_1334 | unknown function | unknown function | 1 | 15222 | 15431 |
| YP_918995.1 | NC_008694_p13 | lysozyme | phrog_822 | amidase | lysis | 1 | 9096 | 9551 |
| YP_919025.1 | NC_008694_p43 | Conserved phage & prophage protein | phrog_6254 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 37096 | 37554 |
| YP_919018.1 | NC_008694_p36 | internal virion protein D | phrog_342 | internal virion protein with endolysin domain | head and packaging | 1 | 27895 | 31842 |
| YP_919009.1 | NC_008694_p27 | tail assembly protein | phrog_1320 | host range and adsorption protein | moron, auxiliary metabolic gene and host takeover | 1 | 17213 | 17485 |
| YP_918990.1 | NC_008694_p8 | hypothetical protein | phrog_1777 | unknown function | unknown function | 1 | 6996 | 7259 |
| YP_919024.1 | NC_008694_p42 | DNA packaging protein B | phrog_38 | terminase large subunit | head and packaging | 1 | 35308 | 37065 |
| YP_919012.1 | NC_008694_p30 | major capsid protein | phrog_267 | major head protein | head and packaging | 1 | 20226 | 21269 |
| YP_918999.1 | NC_008694_p17 | hypothetical protein | phrog_1950 | unknown function | unknown function | 1 | 11507 | 11719 |
| YP_918985.1 | NC_008694_p3 | protein kinase | phrog_2828 | serine-threonine kinase | other | 1 | 1279 | 2406 |
| YP_919011.1 | NC_008694_p29 | capsid assembly protein | phrog_1052 | head assembly | head and packaging | 1 | 19181 | 20095 |
| YP_918988.1 | NC_008694_p6 | host dGTPase inhibitor | phrog_2949 | dGTPase inhibitor; target for F exclusion | other | 1 | 5394 | 5651 |
| YP_918992.1 | NC_008694_p10 | inhibitor of host bacterial RNA polymerase | phrog_1307 | RNA polymerase inhibitor | DNA, RNA and nucleotide metabolism | 1 | 7661 | 7852 |
| YP_919010.1 | NC_008694_p28 | Head-to-tail joining protein | phrog_449 | head-tail adaptor | connector | 1 | 17500 | 19107 |
| YP_918991.1 | NC_008694_p9 | Phage T7 superfamily gene 1.7 protein | phrog_2585 | nucleotide kinase | other | 1 | 7259 | 7573 |
| YP_919007.1 | NC_008694_p25 | hypothetical protein | phrog_1447 | unknown function | unknown function | 1 | 16651 | 16896 |
| YP_919017.1 | NC_008694_p35 | internal virion protein C | phrog_1339 | internal virion protein | head and packaging | 1 | 25592 | 27871 |
| YP_919002.1 | NC_008694_p20 | hypothetical protein | phrog_2633 | endonuclease VII | DNA, RNA and nucleotide metabolism | 1 | 13798 | 14232 |
| YP_919015.1 | NC_008694_p33 | internal virion protein A | phrog_308 | internal virion protein | head and packaging | 1 | 24555 | 24965 |
| YP_919026.1 | NC_008694_p44 | hypothetical protein | phrog_30163 | unknown function | unknown function | 1 | 37817 | 38065 |
| YP_919016.1 | NC_008694_p34 | internal virion protein B | phrog_805 | internal virion protein | head and packaging | 1 | 24969 | 25556 |
| YP_919013.1 | NC_008694_p31 | tail tubular protein A | phrog_446 | tail protein | tail | 1 | 21476 | 22066 |
| YP_919027.1 | NC_008694_p45 | hypothetical protein | singleton | unknown function | unknown function | 1 | 38297 | 38479 |
| YP_918983.1 | NC_008694_p1 | hypothetical protein | singleton | unknown function | unknown function | 1 | 150 | 359 |
| YP_919008.1 | NC_008694_p26 | hypothetical protein | phrog_1391 | unknown function | unknown function | 1 | 16914 | 17198 |
| YP_919005.1 | NC_008694_p23 | host recBCD nuclease inhibitor | phrog_4790 | host RecBCD nuclease inhibitor | moron, auxiliary metabolic gene and host takeover | 1 | 15428 | 15607 |
| YP_918987.1 | NC_008694_p5 | hypothetical protein | phrog_2490 | unknown function | unknown function | 1 | 5245 | 5394 |
| YP_919014.1 | NC_008694_p32 | Tubular tail protein B | phrog_457 | tail protein | tail | 1 | 22093 | 24471 |