Genomic map of Yersinia phage Berlin (NC_008694)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_008694
Definition
Yersinia phage Berlin, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Autographiviridae; Studiervirinae; Berlinvirus; Yersinia virus Berlin.
DB of origin
REFSEQ
Length
38564
Host Name
Yersinia pestis
Host domain
Bacteria
Is prophage?
undef
Number of proteins
45
%GC
47.18
Number of singletons
2
Number of paralogs
1

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_919022.1 NC_008694_p40 phage lambda Rz-like lysis protein phrog_1327 Rz-like spanin lysis 1 34254 34703
YP_919003.1 NC_008694_p21 Phage T7 superfamily gene 5.5 protein phrog_1452 Gp5.5-like host HNS inhibition moron, auxiliary metabolic gene and host takeover 1 14938 15222
YP_918984.1 NC_008694_p2 hypothetical protein phrog_27091 unknown function unknown function 1 978 1208
YP_918994.1 NC_008694_p12 endonuclease I phrog_945 endonuclease DNA, RNA and nucleotide metabolism 1 8647 9099
YP_919001.1 NC_008694_p19 DNA polymerase phrog_17 DNA polymerase DNA, RNA and nucleotide metabolism 1 12124 14918
YP_918996.1 NC_008694_p14 DNA primase/helicase phrog_239 DNA primase/helicase DNA, RNA and nucleotide metabolism 1 9720 11432
YP_919021.1 NC_008694_p39 DNA packaging protein, small subunit phrog_1351 terminase small subunit head and packaging 1 33886 34155
YP_918989.1 NC_008694_p7 ATP-dependent DNA ligase phrog_114 ATP-dependent DNA ligase DNA, RNA and nucleotide metabolism 1 5782 6810
YP_919000.1 NC_008694_p18 hypothetical protein phrog_2254 unknown function unknown function 1 11733 12029
YP_918998.1 NC_008694_p16 hypothetical protein phrog_5140 unknown function unknown function 1 11152 11514
YP_918997.1 NC_008694_p15 Helicase phrog_239 DNA primase/helicase DNA, RNA and nucleotide metabolism 1 9921 11432
YP_918986.1 NC_008694_p4 T3/T7-like RNA polymerase phrog_414 RNA polymerase DNA, RNA and nucleotide metabolism 1 2480 5131
YP_918993.1 NC_008694_p11 single-stranded DNA-binding protein phrog_112 Gp2.5-like ssDNA binding protein and ssDNA annealing protein DNA, RNA and nucleotide metabolism 1 7920 8627
YP_919020.1 NC_008694_p38 type II holin phrog_920 holin lysis 1 33687 33893
YP_919023.1 NC_008694_p41 hypothetical protein phrog_27102 unknown function unknown function 1 34636 35292
YP_919019.1 NC_008694_p37 tail fiber protein phrog_4242 tail fiber protein tail 1 31925 33634
YP_919006.1 NC_008694_p24 exonuclease phrog_107 exonuclease DNA, RNA and nucleotide metabolism 1 15604 16518
YP_919004.1 NC_008694_p22 hypothetical protein phrog_1334 unknown function unknown function 1 15222 15431
YP_918995.1 NC_008694_p13 lysozyme phrog_822 amidase lysis 1 9096 9551
YP_919025.1 NC_008694_p43 Conserved phage & prophage protein phrog_6254 HNH endonuclease DNA, RNA and nucleotide metabolism 1 37096 37554
YP_919018.1 NC_008694_p36 internal virion protein D phrog_342 internal virion protein with endolysin domain head and packaging 1 27895 31842
YP_919009.1 NC_008694_p27 tail assembly protein phrog_1320 host range and adsorption protein moron, auxiliary metabolic gene and host takeover 1 17213 17485
YP_918990.1 NC_008694_p8 hypothetical protein phrog_1777 unknown function unknown function 1 6996 7259
YP_919024.1 NC_008694_p42 DNA packaging protein B phrog_38 terminase large subunit head and packaging 1 35308 37065
YP_919012.1 NC_008694_p30 major capsid protein phrog_267 major head protein head and packaging 1 20226 21269
YP_918999.1 NC_008694_p17 hypothetical protein phrog_1950 unknown function unknown function 1 11507 11719
YP_918985.1 NC_008694_p3 protein kinase phrog_2828 serine-threonine kinase other 1 1279 2406
YP_919011.1 NC_008694_p29 capsid assembly protein phrog_1052 head assembly head and packaging 1 19181 20095
YP_918988.1 NC_008694_p6 host dGTPase inhibitor phrog_2949 dGTPase inhibitor; target for F exclusion other 1 5394 5651
YP_918992.1 NC_008694_p10 inhibitor of host bacterial RNA polymerase phrog_1307 RNA polymerase inhibitor DNA, RNA and nucleotide metabolism 1 7661 7852
YP_919010.1 NC_008694_p28 Head-to-tail joining protein phrog_449 head-tail adaptor connector 1 17500 19107
YP_918991.1 NC_008694_p9 Phage T7 superfamily gene 1.7 protein phrog_2585 nucleotide kinase other 1 7259 7573
YP_919007.1 NC_008694_p25 hypothetical protein phrog_1447 unknown function unknown function 1 16651 16896
YP_919017.1 NC_008694_p35 internal virion protein C phrog_1339 internal virion protein head and packaging 1 25592 27871
YP_919002.1 NC_008694_p20 hypothetical protein phrog_2633 endonuclease VII DNA, RNA and nucleotide metabolism 1 13798 14232
YP_919015.1 NC_008694_p33 internal virion protein A phrog_308 internal virion protein head and packaging 1 24555 24965
YP_919026.1 NC_008694_p44 hypothetical protein phrog_30163 unknown function unknown function 1 37817 38065
YP_919016.1 NC_008694_p34 internal virion protein B phrog_805 internal virion protein head and packaging 1 24969 25556
YP_919013.1 NC_008694_p31 tail tubular protein A phrog_446 tail protein tail 1 21476 22066
YP_919027.1 NC_008694_p45 hypothetical protein singleton unknown function unknown function 1 38297 38479
YP_918983.1 NC_008694_p1 hypothetical protein singleton unknown function unknown function 1 150 359
YP_919008.1 NC_008694_p26 hypothetical protein phrog_1391 unknown function unknown function 1 16914 17198
YP_919005.1 NC_008694_p23 host recBCD nuclease inhibitor phrog_4790 host RecBCD nuclease inhibitor moron, auxiliary metabolic gene and host takeover 1 15428 15607
YP_918987.1 NC_008694_p5 hypothetical protein phrog_2490 unknown function unknown function 1 5245 5394
YP_919014.1 NC_008694_p32 Tubular tail protein B phrog_457 tail protein tail 1 22093 24471