Genomic map of Pseudomonas virus DMS3 (NC_008717)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_008717
Definition
Pseudomonas phage DMS3, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Casadabanvirus.
DB of origin
REFSEQ
Length
36415
Host Name
Pseudomonas aeruginosa
Host domain
Bacteria
Is prophage?
undef
Number of proteins
52
%GC
64.26
Number of singletons
0
Number of paralogs
2

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_950453.1 NC_008717_p29 virion morphogenesis protein phrog_26 tail completion or Neck1 protein connector 1 17823 18290
YP_950474.1 NC_008717_p50 hypothetical protein phrog_2398 unknown function unknown function 1 35513 35815
YP_950470.1 NC_008717_p46 hypothetical protein phrog_1180 tail assembly chaperone tail 1 32020 32259
YP_950450.1 NC_008717_p26 hypothetical protein phrog_38 terminase large subunit head and packaging 1 13295 14947
YP_950465.1 NC_008717_p41 tail length tape measure protein phrog_2335 tail length tape measure protein tail 1 24127 27609
YP_950425.2 NC_008717_p1 c repressor phrog_4 transcriptional repressor transcription regulation -1 170 880
YP_950473.1 NC_008717_p49 hypothetical protein phrog_14458 tail fiber protein tail 1 34668 35513
YP_950456.1 NC_008717_p32 protease (I) and scaffold (Z) protein phrog_328 head maturation protease head and packaging 1 19163 20134
YP_950459.1 NC_008717_p35 hypothetical protein phrog_3376 unknown function unknown function 1 21460 21627
YP_950441.1 NC_008717_p17 hypothetical protein phrog_14676 unknown function unknown function 1 9136 9318
YP_950443.1 NC_008717_p19 integral membrane protein phrog_836 late transcriptional activator transcription regulation 1 9709 10158
YP_950448.1 NC_008717_p24 hypothetical protein phrog_756 DNA binding protein DNA, RNA and nucleotide metabolism 1 12263 12763
YP_950447.1 NC_008717_p23 hypothetical protein phrog_1103 unknown function unknown function 1 12067 12255
YP_950464.1 NC_008717_p40 hypothetical protein phrog_1442 tail assembly chaperone tail 1 23484 23978
YP_950476.1 NC_008717_p52 hypothetical protein phrog_2623 unknown function unknown function 1 36104 36328
YP_950475.1 NC_008717_p51 hypothetical protein phrog_2687 unknown function unknown function 1 35812 36030
YP_950431.1 NC_008717_p7 hypothetical protein phrog_3190 unknown function unknown function 1 5637 6272
YP_950460.1 NC_008717_p36 hypothetical protein phrog_195 head-tail adaptor connector 1 21624 22040
YP_950462.1 NC_008717_p38 hypothetical protein phrog_3129 unknown function unknown function 1 22498 22677
YP_950466.1 NC_008717_p42 hypothetical protein phrog_687 structural protein head and packaging 1 27616 28572
YP_950446.1 NC_008717_p22 hypothetical protein phrog_2975 Rz-like spanin lysis 1 11555 11956
YP_950458.1 NC_008717_p34 hypothetical protein phrog_4833 unknown function unknown function 1 21119 21460
YP_950467.1 NC_008717_p43 hypothetical protein phrog_687 structural protein head and packaging 1 28574 29497
YP_950435.1 NC_008717_p11 hypothetical protein phrog_491 Mu Gam-like end protection DNA, RNA and nucleotide metabolism 1 7077 7595
YP_950433.1 NC_008717_p9 hypothetical protein phrog_2119 unknown function unknown function 1 6373 6786
YP_950426.1 NC_008717_p2 hypothetical protein phrog_2345 transcriptional regulator transcription regulation 1 1428 1862
YP_950430.1 NC_008717_p6 hypothetical protein phrog_2030 transcriptional regulator transcription regulation 1 4900 5565
YP_950461.1 NC_008717_p37 hypothetical protein phrog_209 portal protein head and packaging 1 22037 22510
YP_950472.1 NC_008717_p48 hypothetical protein phrog_1101 tail protein tail 1 32464 34671
YP_950452.1 NC_008717_p28 virion morphogenesis protein phrog_220 minor head protein and DNA pilot head and packaging 1 16537 17823
YP_950445.1 NC_008717_p21 structural protein P5 phrog_873 endolysin head and packaging 1 11023 11439
YP_950471.1 NC_008717_p47 hypothetical protein phrog_1196 tail assembly chaperone tail 1 32256 32474
YP_950444.1 NC_008717_p20 hypothetical protein phrog_1024 unknown function unknown function 1 10553 11023
YP_950427.1 NC_008717_p3 hypothetical protein phrog_4468 unknown function unknown function 1 1862 2071
YP_950468.1 NC_008717_p44 hypothetical protein phrog_1082 tail assembly protein tail 1 29497 31200
YP_950428.1 NC_008717_p4 A transposase phrog_310 transposase integration and excision 1 2175 4136
YP_950438.1 NC_008717_p14 hypothetical protein phrog_1518 host nuclease inhibitor moron, auxiliary metabolic gene and host takeover 1 8190 8471
YP_950469.1 NC_008717_p45 hypothetical protein phrog_778 tail assembly protein tail 1 31190 32011
YP_950454.1 NC_008717_p30 hypothetical protein phrog_8786 type I-E anti-CRISPR protein moron, auxiliary metabolic gene and host takeover 1 18401 18607
YP_950434.1 NC_008717_p10 hypothetical protein phrog_2043 unknown function unknown function 1 6788 7060
YP_950457.1 NC_008717_p33 hypothetical protein phrog_371 major head protein head and packaging 1 20138 21052
YP_950463.1 NC_008717_p39 hypothetical protein phrog_807 major tail protein with Ig-like domain tail 1 22710 23480
YP_950442.1 NC_008717_p18 hypothetical protein phrog_286 unknown function unknown function 1 9315 9722
YP_950437.1 NC_008717_p13 hypothetical protein phrog_4367 unknown function unknown function 1 7906 8187
YP_950432.1 NC_008717_p8 hypothetical protein phrog_3765 unknown function unknown function 1 6257 6373
YP_950436.1 NC_008717_p12 hypothetical protein phrog_1518 host nuclease inhibitor moron, auxiliary metabolic gene and host takeover 1 7597 7878
YP_950439.1 NC_008717_p15 hypothetical protein phrog_3223 unknown function unknown function 1 8473 8679
YP_950429.1 NC_008717_p5 B protein phrog_296 DNA transposition protein integration and excision 1 4151 4903
YP_950451.1 NC_008717_p27 portal protein phrog_113 portal protein head and packaging 1 14957 16537
YP_950455.1 NC_008717_p31 hypothetical protein phrog_3865 unknown function unknown function 1 18597 18818
YP_950440.1 NC_008717_p16 hypothetical protein phrog_3652 unknown function unknown function 1 8682 8951
YP_950449.1 NC_008717_p25 hypothetical protein phrog_1244 unknown function unknown function -1 12769 13296