| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_008717 |
Definition |
Pseudomonas phage DMS3, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Casadabanvirus. |
DB of origin |
REFSEQ |
Length |
36415 |
Host Name |
Pseudomonas aeruginosa |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
52 |
%GC |
64.26 |
Number of singletons |
0 |
Number of paralogs |
2 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_950453.1 | NC_008717_p29 | virion morphogenesis protein | phrog_26 | tail completion or Neck1 protein | connector | 1 | 17823 | 18290 |
| YP_950474.1 | NC_008717_p50 | hypothetical protein | phrog_2398 | unknown function | unknown function | 1 | 35513 | 35815 |
| YP_950470.1 | NC_008717_p46 | hypothetical protein | phrog_1180 | tail assembly chaperone | tail | 1 | 32020 | 32259 |
| YP_950450.1 | NC_008717_p26 | hypothetical protein | phrog_38 | terminase large subunit | head and packaging | 1 | 13295 | 14947 |
| YP_950465.1 | NC_008717_p41 | tail length tape measure protein | phrog_2335 | tail length tape measure protein | tail | 1 | 24127 | 27609 |
| YP_950425.2 | NC_008717_p1 | c repressor | phrog_4 | transcriptional repressor | transcription regulation | -1 | 170 | 880 |
| YP_950473.1 | NC_008717_p49 | hypothetical protein | phrog_14458 | tail fiber protein | tail | 1 | 34668 | 35513 |
| YP_950456.1 | NC_008717_p32 | protease (I) and scaffold (Z) protein | phrog_328 | head maturation protease | head and packaging | 1 | 19163 | 20134 |
| YP_950459.1 | NC_008717_p35 | hypothetical protein | phrog_3376 | unknown function | unknown function | 1 | 21460 | 21627 |
| YP_950441.1 | NC_008717_p17 | hypothetical protein | phrog_14676 | unknown function | unknown function | 1 | 9136 | 9318 |
| YP_950443.1 | NC_008717_p19 | integral membrane protein | phrog_836 | late transcriptional activator | transcription regulation | 1 | 9709 | 10158 |
| YP_950448.1 | NC_008717_p24 | hypothetical protein | phrog_756 | DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 12263 | 12763 |
| YP_950447.1 | NC_008717_p23 | hypothetical protein | phrog_1103 | unknown function | unknown function | 1 | 12067 | 12255 |
| YP_950464.1 | NC_008717_p40 | hypothetical protein | phrog_1442 | tail assembly chaperone | tail | 1 | 23484 | 23978 |
| YP_950476.1 | NC_008717_p52 | hypothetical protein | phrog_2623 | unknown function | unknown function | 1 | 36104 | 36328 |
| YP_950475.1 | NC_008717_p51 | hypothetical protein | phrog_2687 | unknown function | unknown function | 1 | 35812 | 36030 |
| YP_950431.1 | NC_008717_p7 | hypothetical protein | phrog_3190 | unknown function | unknown function | 1 | 5637 | 6272 |
| YP_950460.1 | NC_008717_p36 | hypothetical protein | phrog_195 | head-tail adaptor | connector | 1 | 21624 | 22040 |
| YP_950462.1 | NC_008717_p38 | hypothetical protein | phrog_3129 | unknown function | unknown function | 1 | 22498 | 22677 |
| YP_950466.1 | NC_008717_p42 | hypothetical protein | phrog_687 | structural protein | head and packaging | 1 | 27616 | 28572 |
| YP_950446.1 | NC_008717_p22 | hypothetical protein | phrog_2975 | Rz-like spanin | lysis | 1 | 11555 | 11956 |
| YP_950458.1 | NC_008717_p34 | hypothetical protein | phrog_4833 | unknown function | unknown function | 1 | 21119 | 21460 |
| YP_950467.1 | NC_008717_p43 | hypothetical protein | phrog_687 | structural protein | head and packaging | 1 | 28574 | 29497 |
| YP_950435.1 | NC_008717_p11 | hypothetical protein | phrog_491 | Mu Gam-like end protection | DNA, RNA and nucleotide metabolism | 1 | 7077 | 7595 |
| YP_950433.1 | NC_008717_p9 | hypothetical protein | phrog_2119 | unknown function | unknown function | 1 | 6373 | 6786 |
| YP_950426.1 | NC_008717_p2 | hypothetical protein | phrog_2345 | transcriptional regulator | transcription regulation | 1 | 1428 | 1862 |
| YP_950430.1 | NC_008717_p6 | hypothetical protein | phrog_2030 | transcriptional regulator | transcription regulation | 1 | 4900 | 5565 |
| YP_950461.1 | NC_008717_p37 | hypothetical protein | phrog_209 | portal protein | head and packaging | 1 | 22037 | 22510 |
| YP_950472.1 | NC_008717_p48 | hypothetical protein | phrog_1101 | tail protein | tail | 1 | 32464 | 34671 |
| YP_950452.1 | NC_008717_p28 | virion morphogenesis protein | phrog_220 | minor head protein and DNA pilot | head and packaging | 1 | 16537 | 17823 |
| YP_950445.1 | NC_008717_p21 | structural protein P5 | phrog_873 | endolysin | head and packaging | 1 | 11023 | 11439 |
| YP_950471.1 | NC_008717_p47 | hypothetical protein | phrog_1196 | tail assembly chaperone | tail | 1 | 32256 | 32474 |
| YP_950444.1 | NC_008717_p20 | hypothetical protein | phrog_1024 | unknown function | unknown function | 1 | 10553 | 11023 |
| YP_950427.1 | NC_008717_p3 | hypothetical protein | phrog_4468 | unknown function | unknown function | 1 | 1862 | 2071 |
| YP_950468.1 | NC_008717_p44 | hypothetical protein | phrog_1082 | tail assembly protein | tail | 1 | 29497 | 31200 |
| YP_950428.1 | NC_008717_p4 | A transposase | phrog_310 | transposase | integration and excision | 1 | 2175 | 4136 |
| YP_950438.1 | NC_008717_p14 | hypothetical protein | phrog_1518 | host nuclease inhibitor | moron, auxiliary metabolic gene and host takeover | 1 | 8190 | 8471 |
| YP_950469.1 | NC_008717_p45 | hypothetical protein | phrog_778 | tail assembly protein | tail | 1 | 31190 | 32011 |
| YP_950454.1 | NC_008717_p30 | hypothetical protein | phrog_8786 | type I-E anti-CRISPR protein | moron, auxiliary metabolic gene and host takeover | 1 | 18401 | 18607 |
| YP_950434.1 | NC_008717_p10 | hypothetical protein | phrog_2043 | unknown function | unknown function | 1 | 6788 | 7060 |
| YP_950457.1 | NC_008717_p33 | hypothetical protein | phrog_371 | major head protein | head and packaging | 1 | 20138 | 21052 |
| YP_950463.1 | NC_008717_p39 | hypothetical protein | phrog_807 | major tail protein with Ig-like domain | tail | 1 | 22710 | 23480 |
| YP_950442.1 | NC_008717_p18 | hypothetical protein | phrog_286 | unknown function | unknown function | 1 | 9315 | 9722 |
| YP_950437.1 | NC_008717_p13 | hypothetical protein | phrog_4367 | unknown function | unknown function | 1 | 7906 | 8187 |
| YP_950432.1 | NC_008717_p8 | hypothetical protein | phrog_3765 | unknown function | unknown function | 1 | 6257 | 6373 |
| YP_950436.1 | NC_008717_p12 | hypothetical protein | phrog_1518 | host nuclease inhibitor | moron, auxiliary metabolic gene and host takeover | 1 | 7597 | 7878 |
| YP_950439.1 | NC_008717_p15 | hypothetical protein | phrog_3223 | unknown function | unknown function | 1 | 8473 | 8679 |
| YP_950429.1 | NC_008717_p5 | B protein | phrog_296 | DNA transposition protein | integration and excision | 1 | 4151 | 4903 |
| YP_950451.1 | NC_008717_p27 | portal protein | phrog_113 | portal protein | head and packaging | 1 | 14957 | 16537 |
| YP_950455.1 | NC_008717_p31 | hypothetical protein | phrog_3865 | unknown function | unknown function | 1 | 18597 | 18818 |
| YP_950440.1 | NC_008717_p16 | hypothetical protein | phrog_3652 | unknown function | unknown function | 1 | 8682 | 8951 |
| YP_950449.1 | NC_008717_p25 | hypothetical protein | phrog_1244 | unknown function | unknown function | -1 | 12769 | 13296 |