Genomic map of Streptococcus phage SMP (NC_008721)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_008721
Definition
Streptococcus phage SMP, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae.
DB of origin
REFSEQ
Length
36019
Host Name
Streptococcus suis
Host domain
Bacteria
Is prophage?
undef
Number of proteins
48
%GC
41.58
Number of singletons
2
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_950558.1 NC_008721_p8 integrase phrog_1 integrase integration and excision -1 9649 10791
YP_950551.1 NC_008721_p1 tail tape measure protein phrog_58 tail length tape measure protein tail 1 128 2107
YP_950570.1 NC_008721_p20 hypothetical protein phrog_2486 unknown function unknown function 1 18146 18466
YP_950597.1 NC_008721_p47 hypothetical protein phrog_441 tail assembly chaperone tail 1 34876 35178
YP_950557.1 NC_008721_p7 lysin phrog_3861 amidase lysis 1 7656 9101
YP_950553.1 NC_008721_p3 minor structural protein phrog_1330 tail protein tail 1 3077 6562
YP_950575.1 NC_008721_p25 hypothetical protein phrog_236 nucleotide kinase other 1 22441 22830
YP_950593.1 NC_008721_p43 hypothetical protein phrog_5 tail completion or Neck1 protein connector 1 33148 33492
YP_950562.1 NC_008721_p12 hypothetical protein phrog_30904 unknown function unknown function 1 12973 13323
YP_950584.1 NC_008721_p34 head morphogenesis protein phrog_115 minor head protein head and packaging 1 27905 29443
YP_950572.1 NC_008721_p22 single-strand binding protein phrog_44 single strand DNA binding protein DNA, RNA and nucleotide metabolism 1 19464 19862
YP_950587.1 NC_008721_p37 hypothetical protein phrog_903 unknown function unknown function 1 30043 30276
YP_950576.1 NC_008721_p26 hypothetical protein phrog_8505 unknown function unknown function 1 22823 22999
YP_950583.1 NC_008721_p33 portal protein phrog_64 portal protein head and packaging 1 26614 27936
YP_950564.1 NC_008721_p14 excisionase phrog_904 excisionase integration and excision 1 13858 14223
YP_950554.1 NC_008721_p4 hypothetical protein phrog_1137 unknown function unknown function 1 6571 6780
YP_950555.1 NC_008721_p5 hypothetical protein phrog_1164 unknown function unknown function 1 6783 7127
YP_950580.1 NC_008721_p30 hypothetical protein singleton unknown function unknown function 1 24114 24347
YP_950591.1 NC_008721_p41 hypothetical protein phrog_390 Arc-like repressor transcription regulation 1 32183 32494
YP_950592.1 NC_008721_p42 hypothetical protein phrog_132 head-tail adaptor connector 1 32497 32844
YP_950566.1 NC_008721_p16 hypothetical protein phrog_1891 HNH endonuclease DNA, RNA and nucleotide metabolism 1 14927 15691
YP_950556.1 NC_008721_p6 holin phrog_199 holin lysis 1 7131 7559
YP_950590.1 NC_008721_p40 head protein phrog_10 major head protein head and packaging 1 31270 32163
YP_950569.1 NC_008721_p19 helicase phrog_62 DNA helicase DNA, RNA and nucleotide metabolism 1 17189 18127
YP_950560.1 NC_008721_p10 repressor phrog_4 transcriptional repressor transcription regulation -1 11804 12526
YP_950581.1 NC_008721_p31 hypothetical protein phrog_309 terminase small subunit head and packaging 1 24753 25178
YP_950596.1 NC_008721_p46 hypothetical protein phrog_183 tail chaperone protein tail 1 34463 34804
YP_950579.1 NC_008721_p29 hypothetical protein singleton unknown function unknown function 1 23711 23863
YP_950577.1 NC_008721_p27 hypothetical protein phrog_1489 unknown function unknown function 1 22971 23126
YP_950574.1 NC_008721_p24 hypothetical protein phrog_1313 DNA helicase DNA, RNA and nucleotide metabolism 1 20822 22063
YP_950578.1 NC_008721_p28 hypothetical protein phrog_884 unknown function unknown function 1 23153 23428
YP_950565.1 NC_008721_p15 hypothetical protein phrog_2044 RNA polymerase beta subunit DNA, RNA and nucleotide metabolism 1 14725 14955
YP_950582.1 NC_008721_p32 terminase large subunit phrog_2 terminase large subunit head and packaging 1 25156 26454
YP_950567.1 NC_008721_p17 hypothetical protein phrog_253 Mu Gam-like end protection DNA, RNA and nucleotide metabolism 1 15684 16163
YP_950571.1 NC_008721_p21 hypothetical protein phrog_155 Erf-like ssDNA annealing protein DNA, RNA and nucleotide metabolism 1 18476 19171
YP_950559.1 NC_008721_p9 hypothetical protein phrog_17298 unknown function unknown function -1 10915 11784
YP_950595.1 NC_008721_p45 major tail protein phrog_238 major tail protein tail 1 33873 34415
YP_950586.1 NC_008721_p36 hypothetical protein phrog_9654 unknown function unknown function 1 29832 30050
YP_950588.1 NC_008721_p38 hypothetical protein phrog_918 unknown function unknown function 1 30134 30538
YP_950598.2 NC_008721_p48 hypothetical protein phrog_6900 tail length tape measure protein tail 1 35178 36019
YP_950594.1 NC_008721_p44 hypothetical protein phrog_176 tail terminator connector 1 33489 33872
YP_950573.1 NC_008721_p23 replication protein phrog_695 DNA polymerase/primase DNA, RNA and nucleotide metabolism 1 19873 20700
YP_950568.1 NC_008721_p18 hypothetical protein phrog_1341 unknown function unknown function 1 16160 16522
YP_950585.1 NC_008721_p35 hypothetical protein phrog_1233 unknown function unknown function 1 29549 29872
YP_950589.1 NC_008721_p39 hypothetical protein phrog_172 head scaffolding protein head and packaging 1 30706 31257
YP_950561.1 NC_008721_p11 hypothetical protein phrog_3 transcriptional repressor transcription regulation 1 12709 12915
YP_950552.1 NC_008721_p2 hypothetical protein phrog_33 distal tail protein Dit tail 1 2121 2912
YP_950563.1 NC_008721_p13 hypothetical protein phrog_633 transcriptional regulator transcription regulation 1 13551 13895