| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_008722 |
Definition |
Staphylococcus phage CNPH82, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Phietavirus. |
DB of origin |
REFSEQ |
Length |
43420 |
Host Name |
Staphylococcus epidermidis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
65 |
%GC |
34.67 |
Number of singletons |
1 |
Number of paralogs |
3 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_950601.1 | NC_008722_p3 | phage portal protein | phrog_64 | portal protein | head and packaging | 1 | 1934 | 3370 |
| YP_950618.1 | NC_008722_p20 | phage pre-neck appendage protein | phrog_4775 | pre-neck appendage protein | connector | 1 | 15397 | 18063 |
| YP_950622.1 | NC_008722_p24 | hypothetical protein | phrog_276 | unknown function | unknown function | 1 | 20084 | 20416 |
| YP_950660.1 | NC_008722_p62 | regulator RinB | phrog_152 | RinB-like transcriptional activator | transcription regulation | 1 | 41889 | 42059 |
| YP_950632.1 | NC_008722_p34 | hypothetical protein | phrog_87 | metallo-protease | other | -1 | 29270 | 29740 |
| YP_950640.1 | NC_008722_p42 | topoisomerase | phrog_659 | Sak-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 32739 | 33365 |
| YP_950600.1 | NC_008722_p2 | large terminase subunit | phrog_2 | terminase large subunit | head and packaging | 1 | 663 | 1928 |
| YP_950653.1 | NC_008722_p55 | hypothetical protein | phrog_59 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 39026 | 39706 |
| YP_950644.1 | NC_008722_p46 | hypothetical protein | phrog_2289 | helicase loader | DNA, RNA and nucleotide metabolism | 1 | 35181 | 35534 |
| YP_950637.1 | NC_008722_p39 | hypothetical protein | phrog_16149 | unknown function | unknown function | 1 | 31741 | 31902 |
| YP_950627.1 | NC_008722_p29 | phage holin | phrog_263 | holin | lysis | 1 | 24053 | 24325 |
| YP_950620.1 | NC_008722_p22 | hypothetical protein | phrog_1766 | tail fiber protein | tail | 1 | 19579 | 19938 |
| YP_950630.1 | NC_008722_p32 | site-specifc recombinase | phrog_95 | integrase | integration and excision | -1 | 27255 | 28631 |
| YP_950648.1 | NC_008722_p50 | hypothetical protein | phrog_190 | Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 37222 | 37638 |
| YP_950629.1 | NC_008722_p31 | hypothetical protein | phrog_4538 | unknown function | unknown function | 1 | 25774 | 26934 |
| YP_950609.1 | NC_008722_p11 | hypothetical protein | phrog_25 | head closure Hc1 | connector | 1 | 6818 | 7147 |
| YP_950615.1 | NC_008722_p17 | phage tape measure protein | phrog_58 | tail length tape measure protein | tail | 1 | 9454 | 12558 |
| YP_950642.1 | NC_008722_p44 | hypothetical protein | phrog_398 | unknown function | unknown function | 1 | 33782 | 34447 |
| YP_950657.1 | NC_008722_p59 | hypothetical protein | phrog_8714 | unknown function | unknown function | 1 | 40764 | 40943 |
| YP_950662.1 | NC_008722_p64 | hypothetical protein | phrog_1367 | unknown function | unknown function | 1 | 42651 | 42791 |
| YP_950619.1 | NC_008722_p21 | hypothetical protein | phrog_257 | minor tail protein | tail | 1 | 18063 | 19595 |
| YP_950606.1 | NC_008722_p8 | hypothetical protein | phrog_422 | major head protein | head and packaging | 1 | 5215 | 6204 |
| YP_950612.1 | NC_008722_p14 | hypothetical protein | phrog_238 | major tail protein | tail | 1 | 7990 | 8529 |
| YP_950631.1 | NC_008722_p33 | hypothetical protein | phrog_11835 | unknown function | unknown function | -1 | 28686 | 29252 |
| YP_950639.1 | NC_008722_p41 | hypothetical protein | phrog_946 | unknown function | unknown function | 1 | 32522 | 32746 |
| YP_950599.1 | NC_008722_p1 | small terminase subunit | phrog_51 | terminase small subunit | head and packaging | 1 | 245 | 679 |
| YP_950663.1 | NC_008722_p65 | regulator RinA | phrog_36 | transcriptional regulator | transcription regulation | 1 | 42794 | 43210 |
| YP_950647.1 | NC_008722_p49 | hypothetical protein | phrog_433 | unknown function | unknown function | 1 | 36967 | 37212 |
| YP_950621.1 | NC_008722_p23 | hypothetical protein | phrog_134 | unknown function | unknown function | 1 | 19940 | 20080 |
| YP_950650.1 | NC_008722_p52 | hypothetical protein | phrog_6999 | unknown function | unknown function | 1 | 38041 | 38232 |
| YP_950611.1 | NC_008722_p13 | hypothetical protein | phrog_176 | tail terminator | connector | 1 | 7566 | 8003 |
| YP_950655.1 | NC_008722_p57 | nuclease protein | phrog_452 | endonuclease | DNA, RNA and nucleotide metabolism | 1 | 39876 | 40232 |
| YP_950651.1 | NC_008722_p53 | hypothetical protein | phrog_201 | Panton-Valentine leukocicin | DNA, RNA and nucleotide metabolism | 1 | 38233 | 38592 |
| YP_950603.1 | NC_008722_p5 | hypothetical protein | singleton | unknown function | unknown function | 1 | 4283 | 4387 |
| YP_950646.1 | NC_008722_p48 | hypothetical protein | phrog_3161 | unknown function | unknown function | 1 | 36768 | 36989 |
| YP_950623.1 | NC_008722_p25 | amidase | phrog_759 | tail associated cell-wall hydrolase | other | 1 | 20555 | 22456 |
| YP_950625.1 | NC_008722_p27 | hypothetical protein | phrog_1766 | tail fiber protein | tail | 1 | 23506 | 23859 |
| YP_950641.1 | NC_008722_p43 | single-strand DNA binding protein | phrog_44 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 33358 | 33768 |
| YP_950605.1 | NC_008722_p7 | phage minor capsid protein | phrog_194 | head scaffolding protein | head and packaging | 1 | 4709 | 5233 |
| YP_950645.1 | NC_008722_p47 | DNA helicase | phrog_19 | DnaB-like replicative helicase | DNA, RNA and nucleotide metabolism | 1 | 35521 | 36771 |
| YP_950652.1 | NC_008722_p54 | hypothetical protein | phrog_1689 | nucleotide kinase | other | 1 | 38589 | 39023 |
| YP_950635.1 | NC_008722_p37 | hypothetical protein | phrog_3240 | unknown function | unknown function | -1 | 30674 | 30928 |
| YP_950659.1 | NC_008722_p61 | hypothetical protein | phrog_24716 | unknown function | unknown function | 1 | 41641 | 41892 |
| YP_950656.1 | NC_008722_p58 | hypothetical protein | phrog_742 | acetyltransferase | other | 1 | 40235 | 40774 |
| YP_950607.1 | NC_008722_p9 | hypothetical protein | phrog_390 | Arc-like repressor | transcription regulation | 1 | 6221 | 6511 |
| YP_950649.1 | NC_008722_p51 | hypothetical protein | phrog_467 | unknown function | unknown function | 1 | 37625 | 38089 |
| YP_950634.1 | NC_008722_p36 | cro-like repressor | phrog_3 | transcriptional repressor | transcription regulation | 1 | 30267 | 30509 |
| YP_950616.1 | NC_008722_p18 | hypothetical protein | phrog_33 | distal tail protein Dit | tail | 1 | 12574 | 13512 |
| YP_950643.1 | NC_008722_p45 | DNA replication protein | phrog_186 | DnaD-like helicase loader | DNA, RNA and nucleotide metabolism | 1 | 34447 | 35175 |
| YP_950624.1 | NC_008722_p26 | tail fiber | phrog_257 | minor tail protein | tail | 1 | 22646 | 23494 |
| YP_950658.1 | NC_008722_p60 | dUTP pyrophosphatase | phrog_135 | dUTPase | DNA, RNA and nucleotide metabolism | 1 | 40936 | 41361 |
| YP_950617.1 | NC_008722_p19 | hypothetical protein | phrog_663 | minor head protein | head and packaging | 1 | 13526 | 15382 |
| YP_950613.1 | NC_008722_p15 | hypothetical protein | phrog_183 | tail chaperone protein | tail | 1 | 8592 | 9086 |
| YP_950636.1 | NC_008722_p38 | antirepressor | phrog_373 | anti-repressor | transcription regulation | 1 | 30930 | 31703 |
| YP_950633.1 | NC_008722_p35 | cI-like repressor | phrog_8 | transcriptional regulator | transcription regulation | -1 | 29746 | 30078 |
| YP_950604.1 | NC_008722_p6 | hypothetical protein | phrog_2881 | dCMP hydroxymethylase | DNA, RNA and nucleotide metabolism | 1 | 4388 | 4594 |
| YP_950628.1 | NC_008722_p30 | amidase | phrog_489 | endolysin | lysis | 1 | 24325 | 25707 |
| YP_950661.1 | NC_008722_p63 | hypothetical protein | phrog_2409 | unknown function | unknown function | 1 | 42265 | 42663 |
| YP_950638.1 | NC_008722_p40 | hypothetical protein | phrog_7824 | unknown function | unknown function | 1 | 32275 | 32550 |
| YP_950614.1 | NC_008722_p16 | hypothetical protein | phrog_1404 | tail protein | tail | 1 | 9149 | 9451 |
| YP_950602.1 | NC_008722_p4 | phage minor head protein | phrog_115 | minor head protein | head and packaging | 1 | 3327 | 4280 |
| YP_950608.1 | NC_008722_p10 | hypothetical protein | phrog_1161 | head-tail adaptor | connector | 1 | 6511 | 6825 |
| YP_950654.1 | NC_008722_p56 | hypothetical protein | phrog_3683 | unknown function | unknown function | 1 | 39703 | 39888 |
| YP_950626.1 | NC_008722_p28 | hypothetical protein | phrog_134 | unknown function | unknown function | 1 | 23852 | 23998 |
| YP_950610.1 | NC_008722_p12 | hypothetical protein | phrog_5 | tail completion or Neck1 protein | connector | 1 | 7140 | 7553 |