Genomic map of Staphylococcus virus CNPH82 (NC_008722)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_008722
Definition
Staphylococcus phage CNPH82, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Phietavirus.
DB of origin
REFSEQ
Length
43420
Host Name
Staphylococcus epidermidis
Host domain
Bacteria
Is prophage?
undef
Number of proteins
65
%GC
34.67
Number of singletons
1
Number of paralogs
3

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_950601.1 NC_008722_p3 phage portal protein phrog_64 portal protein head and packaging 1 1934 3370
YP_950618.1 NC_008722_p20 phage pre-neck appendage protein phrog_4775 pre-neck appendage protein connector 1 15397 18063
YP_950622.1 NC_008722_p24 hypothetical protein phrog_276 unknown function unknown function 1 20084 20416
YP_950660.1 NC_008722_p62 regulator RinB phrog_152 RinB-like transcriptional activator transcription regulation 1 41889 42059
YP_950632.1 NC_008722_p34 hypothetical protein phrog_87 metallo-protease other -1 29270 29740
YP_950640.1 NC_008722_p42 topoisomerase phrog_659 Sak-like ssDNA annealing protein DNA, RNA and nucleotide metabolism 1 32739 33365
YP_950600.1 NC_008722_p2 large terminase subunit phrog_2 terminase large subunit head and packaging 1 663 1928
YP_950653.1 NC_008722_p55 hypothetical protein phrog_59 HNH endonuclease DNA, RNA and nucleotide metabolism 1 39026 39706
YP_950644.1 NC_008722_p46 hypothetical protein phrog_2289 helicase loader DNA, RNA and nucleotide metabolism 1 35181 35534
YP_950637.1 NC_008722_p39 hypothetical protein phrog_16149 unknown function unknown function 1 31741 31902
YP_950627.1 NC_008722_p29 phage holin phrog_263 holin lysis 1 24053 24325
YP_950620.1 NC_008722_p22 hypothetical protein phrog_1766 tail fiber protein tail 1 19579 19938
YP_950630.1 NC_008722_p32 site-specifc recombinase phrog_95 integrase integration and excision -1 27255 28631
YP_950648.1 NC_008722_p50 hypothetical protein phrog_190 Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 37222 37638
YP_950629.1 NC_008722_p31 hypothetical protein phrog_4538 unknown function unknown function 1 25774 26934
YP_950609.1 NC_008722_p11 hypothetical protein phrog_25 head closure Hc1 connector 1 6818 7147
YP_950615.1 NC_008722_p17 phage tape measure protein phrog_58 tail length tape measure protein tail 1 9454 12558
YP_950642.1 NC_008722_p44 hypothetical protein phrog_398 unknown function unknown function 1 33782 34447
YP_950657.1 NC_008722_p59 hypothetical protein phrog_8714 unknown function unknown function 1 40764 40943
YP_950662.1 NC_008722_p64 hypothetical protein phrog_1367 unknown function unknown function 1 42651 42791
YP_950619.1 NC_008722_p21 hypothetical protein phrog_257 minor tail protein tail 1 18063 19595
YP_950606.1 NC_008722_p8 hypothetical protein phrog_422 major head protein head and packaging 1 5215 6204
YP_950612.1 NC_008722_p14 hypothetical protein phrog_238 major tail protein tail 1 7990 8529
YP_950631.1 NC_008722_p33 hypothetical protein phrog_11835 unknown function unknown function -1 28686 29252
YP_950639.1 NC_008722_p41 hypothetical protein phrog_946 unknown function unknown function 1 32522 32746
YP_950599.1 NC_008722_p1 small terminase subunit phrog_51 terminase small subunit head and packaging 1 245 679
YP_950663.1 NC_008722_p65 regulator RinA phrog_36 transcriptional regulator transcription regulation 1 42794 43210
YP_950647.1 NC_008722_p49 hypothetical protein phrog_433 unknown function unknown function 1 36967 37212
YP_950621.1 NC_008722_p23 hypothetical protein phrog_134 unknown function unknown function 1 19940 20080
YP_950650.1 NC_008722_p52 hypothetical protein phrog_6999 unknown function unknown function 1 38041 38232
YP_950611.1 NC_008722_p13 hypothetical protein phrog_176 tail terminator connector 1 7566 8003
YP_950655.1 NC_008722_p57 nuclease protein phrog_452 endonuclease DNA, RNA and nucleotide metabolism 1 39876 40232
YP_950651.1 NC_008722_p53 hypothetical protein phrog_201 Panton-Valentine leukocicin DNA, RNA and nucleotide metabolism 1 38233 38592
YP_950603.1 NC_008722_p5 hypothetical protein singleton unknown function unknown function 1 4283 4387
YP_950646.1 NC_008722_p48 hypothetical protein phrog_3161 unknown function unknown function 1 36768 36989
YP_950623.1 NC_008722_p25 amidase phrog_759 tail associated cell-wall hydrolase other 1 20555 22456
YP_950625.1 NC_008722_p27 hypothetical protein phrog_1766 tail fiber protein tail 1 23506 23859
YP_950641.1 NC_008722_p43 single-strand DNA binding protein phrog_44 single strand DNA binding protein DNA, RNA and nucleotide metabolism 1 33358 33768
YP_950605.1 NC_008722_p7 phage minor capsid protein phrog_194 head scaffolding protein head and packaging 1 4709 5233
YP_950645.1 NC_008722_p47 DNA helicase phrog_19 DnaB-like replicative helicase DNA, RNA and nucleotide metabolism 1 35521 36771
YP_950652.1 NC_008722_p54 hypothetical protein phrog_1689 nucleotide kinase other 1 38589 39023
YP_950635.1 NC_008722_p37 hypothetical protein phrog_3240 unknown function unknown function -1 30674 30928
YP_950659.1 NC_008722_p61 hypothetical protein phrog_24716 unknown function unknown function 1 41641 41892
YP_950656.1 NC_008722_p58 hypothetical protein phrog_742 acetyltransferase other 1 40235 40774
YP_950607.1 NC_008722_p9 hypothetical protein phrog_390 Arc-like repressor transcription regulation 1 6221 6511
YP_950649.1 NC_008722_p51 hypothetical protein phrog_467 unknown function unknown function 1 37625 38089
YP_950634.1 NC_008722_p36 cro-like repressor phrog_3 transcriptional repressor transcription regulation 1 30267 30509
YP_950616.1 NC_008722_p18 hypothetical protein phrog_33 distal tail protein Dit tail 1 12574 13512
YP_950643.1 NC_008722_p45 DNA replication protein phrog_186 DnaD-like helicase loader DNA, RNA and nucleotide metabolism 1 34447 35175
YP_950624.1 NC_008722_p26 tail fiber phrog_257 minor tail protein tail 1 22646 23494
YP_950658.1 NC_008722_p60 dUTP pyrophosphatase phrog_135 dUTPase DNA, RNA and nucleotide metabolism 1 40936 41361
YP_950617.1 NC_008722_p19 hypothetical protein phrog_663 minor head protein head and packaging 1 13526 15382
YP_950613.1 NC_008722_p15 hypothetical protein phrog_183 tail chaperone protein tail 1 8592 9086
YP_950636.1 NC_008722_p38 antirepressor phrog_373 anti-repressor transcription regulation 1 30930 31703
YP_950633.1 NC_008722_p35 cI-like repressor phrog_8 transcriptional regulator transcription regulation -1 29746 30078
YP_950604.1 NC_008722_p6 hypothetical protein phrog_2881 dCMP hydroxymethylase DNA, RNA and nucleotide metabolism 1 4388 4594
YP_950628.1 NC_008722_p30 amidase phrog_489 endolysin lysis 1 24325 25707
YP_950661.1 NC_008722_p63 hypothetical protein phrog_2409 unknown function unknown function 1 42265 42663
YP_950638.1 NC_008722_p40 hypothetical protein phrog_7824 unknown function unknown function 1 32275 32550
YP_950614.1 NC_008722_p16 hypothetical protein phrog_1404 tail protein tail 1 9149 9451
YP_950602.1 NC_008722_p4 phage minor head protein phrog_115 minor head protein head and packaging 1 3327 4280
YP_950608.1 NC_008722_p10 hypothetical protein phrog_1161 head-tail adaptor connector 1 6511 6825
YP_950654.1 NC_008722_p56 hypothetical protein phrog_3683 unknown function unknown function 1 39703 39888
YP_950626.1 NC_008722_p28 hypothetical protein phrog_134 unknown function unknown function 1 23852 23998
YP_950610.1 NC_008722_p12 hypothetical protein phrog_5 tail completion or Neck1 protein connector 1 7140 7553