| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_008723 |
Definition |
Staphylococcus phage PH15, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Phietavirus. |
DB of origin |
REFSEQ |
Length |
44041 |
Host Name |
Staphylococcus epidermidis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
68 |
%GC |
34.9 |
Number of singletons |
0 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_950724.1 | NC_008723_p62 | dUTP pyrophosphatase | phrog_135 | dUTPase | DNA, RNA and nucleotide metabolism | 1 | 41968 | 42393 |
| YP_950703.1 | NC_008723_p41 | hypothetical protein | phrog_14955 | unknown function | unknown function | -1 | 33372 | 33578 |
| YP_950699.1 | NC_008723_p37 | hypothetical protein | phrog_6431 | unknown function | unknown function | 1 | 32111 | 32272 |
| YP_950692.1 | NC_008723_p30 | hypothetical protein | phrog_27385 | unknown function | unknown function | 1 | 27582 | 27797 |
| YP_950700.1 | NC_008723_p38 | hypothetical protein | phrog_13376 | unknown function | unknown function | -1 | 32233 | 32403 |
| YP_950667.1 | NC_008723_p5 | phage head protein | phrog_115 | minor head protein | head and packaging | 1 | 4351 | 5304 |
| YP_950691.1 | NC_008723_p29 | hypothetical protein | phrog_4538 | unknown function | unknown function | 1 | 26247 | 27152 |
| YP_950722.1 | NC_008723_p60 | hypothetical protein | phrog_5723 | acetyltransferase | other | 1 | 41558 | 41806 |
| YP_950726.1 | NC_008723_p64 | hypothetical protein | phrog_278 | transcriptional regulator | transcription regulation | 1 | 42780 | 42932 |
| YP_950672.1 | NC_008723_p10 | hypothetical protein | phrog_25 | head closure Hc1 | connector | 1 | 7466 | 7795 |
| YP_950729.1 | NC_008723_p67 | hypothetical protein | phrog_5723 | acetyltransferase | other | 1 | 43239 | 43460 |
| YP_950715.1 | NC_008723_p53 | hypothetical protein | phrog_433 | unknown function | unknown function | 1 | 38728 | 38973 |
| YP_950713.1 | NC_008723_p51 | helicase | phrog_19 | DnaB-like replicative helicase | DNA, RNA and nucleotide metabolism | 1 | 37297 | 38532 |
| YP_950723.1 | NC_008723_p61 | hypothetical protein | phrog_8714 | unknown function | unknown function | 1 | 41796 | 41975 |
| YP_950711.1 | NC_008723_p49 | hypothetical protein | phrog_186 | DnaD-like helicase loader | DNA, RNA and nucleotide metabolism | 1 | 36151 | 36945 |
| YP_950721.1 | NC_008723_p59 | hypothetical protein | phrog_4380 | unknown function | unknown function | 1 | 41242 | 41568 |
| YP_950701.1 | NC_008723_p39 | antirepressor | phrog_63 | anti-repressor Ant | transcription regulation | 1 | 32452 | 33219 |
| YP_950673.1 | NC_008723_p11 | hypothetical protein | phrog_5 | tail completion or Neck1 protein | connector | 1 | 7788 | 8201 |
| YP_950684.1 | NC_008723_p22 | hypothetical protein | phrog_134 | unknown function | unknown function | 1 | 20587 | 20727 |
| YP_950716.1 | NC_008723_p54 | endodeoxyribonuclease | phrog_140 | RusA-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 38982 | 39389 |
| YP_950720.1 | NC_008723_p58 | HNH endonuclease | phrog_59 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 40381 | 41061 |
| YP_950674.1 | NC_008723_p12 | hypothetical protein | phrog_176 | tail terminator | connector | 1 | 8214 | 8651 |
| YP_950676.1 | NC_008723_p14 | hypothetical protein | phrog_183 | tail chaperone protein | tail | 1 | 9239 | 9733 |
| YP_950669.1 | NC_008723_p7 | phage major capsid protein | phrog_544 | major head protein | head and packaging | 1 | 6022 | 6852 |
| YP_950706.1 | NC_008723_p44 | hypothetical protein | phrog_7824 | unknown function | unknown function | 1 | 33971 | 34246 |
| YP_950678.1 | NC_008723_p16 | phage tape measure protein | phrog_58 | tail length tape measure protein | tail | 1 | 10101 | 13205 |
| YP_950719.1 | NC_008723_p57 | hypothetical protein | phrog_1689 | nucleotide kinase | other | 1 | 39944 | 40378 |
| YP_950665.1 | NC_008723_p3 | SegB homing endonuclease | phrog_314 | homing endonuclease | DNA, RNA and nucleotide metabolism | 1 | 1671 | 2300 |
| YP_950695.1 | NC_008723_p33 | hypothetical protein | phrog_5375 | unknown function | unknown function | -1 | 30394 | 30870 |
| YP_950697.1 | NC_008723_p35 | cI-like repressor | phrog_8 | transcriptional regulator | transcription regulation | -1 | 31363 | 31686 |
| YP_950670.1 | NC_008723_p8 | hypothetical protein | phrog_390 | Arc-like repressor | transcription regulation | 1 | 6869 | 7159 |
| YP_950689.1 | NC_008723_p27 | phage holin | phrog_263 | holin | lysis | 1 | 24493 | 24765 |
| YP_950677.1 | NC_008723_p15 | hypothetical protein | phrog_1404 | tail protein | tail | 1 | 9796 | 10098 |
| YP_950664.1 | NC_008723_p2 | large terminase subunit | phrog_2 | terminase large subunit | head and packaging | 1 | 720 | 2952 |
| YP_950683.1 | NC_008723_p21 | hypothetical protein | phrog_1766 | tail fiber protein | tail | 1 | 20226 | 20585 |
| YP_950698.1 | NC_008723_p36 | Cro-like repressor | phrog_3 | transcriptional repressor | transcription regulation | 1 | 31850 | 32098 |
| YP_950707.1 | NC_008723_p45 | hypothetical protein | phrog_946 | unknown function | unknown function | 1 | 34218 | 34442 |
| YP_950727.1 | NC_008723_p65 | regulator RinB | phrog_152 | RinB-like transcriptional activator | transcription regulation | 1 | 42925 | 43095 |
| YP_950728.1 | NC_008723_p66 | hypothetical protein | phrog_1367 | unknown function | unknown function | 1 | 43098 | 43238 |
| YP_950666.1 | NC_008723_p4 | phage portal protein | phrog_64 | portal protein | head and packaging | 1 | 2958 | 4394 |
| YP_950704.1 | NC_008723_p42 | hypothetical protein | phrog_3785 | unknown function | unknown function | 1 | 33616 | 33738 |
| YP_950708.1 | NC_008723_p46 | topoisomerase | phrog_659 | Sak-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 34435 | 35061 |
| YP_950718.1 | NC_008723_p56 | hypothetical protein | phrog_201 | Panton-Valentine leukocicin | DNA, RNA and nucleotide metabolism | 1 | 39588 | 39947 |
| YP_950687.1 | NC_008723_p25 | hypothetical protein | phrog_6487 | unknown function | unknown function | 1 | 23405 | 23914 |
| YP_950693.1 | NC_008723_p31 | site-specific recombinase | phrog_95 | integrase | integration and excision | -1 | 28480 | 29856 |
| YP_950725.1 | NC_008723_p63 | hypothetical protein | phrog_20198 | ATPase | other | 1 | 42472 | 42783 |
| YP_950675.1 | NC_008723_p13 | hypothetical protein | phrog_238 | major tail protein | tail | 1 | 8638 | 9177 |
| YP_950679.1 | NC_008723_p17 | hypothetical protein | phrog_33 | distal tail protein Dit | tail | 1 | 13221 | 14159 |
| YP_950668.1 | NC_008723_p6 | phage minor capsid protein | phrog_194 | head scaffolding protein | head and packaging | 1 | 5408 | 6004 |
| YP_950702.1 | NC_008723_p40 | hypothetical protein | phrog_16149 | unknown function | unknown function | 1 | 33222 | 33386 |
| YP_950694.1 | NC_008723_p32 | hypothetical protein | phrog_27855 | unknown function | unknown function | -1 | 29910 | 30392 |
| YP_950685.1 | NC_008723_p23 | hypothetical protein | phrog_276 | unknown function | unknown function | 1 | 20764 | 21063 |
| YP_950709.1 | NC_008723_p47 | single-strand DNA binding protein | phrog_44 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 35054 | 35470 |
| YP_950680.1 | NC_008723_p18 | hypothetical protein | phrog_663 | minor head protein | head and packaging | 1 | 14173 | 16029 |
| YP_950717.1 | NC_008723_p55 | transcriptional regulator | phrog_13968 | transcriptional regulator | transcription regulation | 1 | 39390 | 39587 |
| YP_950682.1 | NC_008723_p20 | hypothetical protein | phrog_257 | minor tail protein | tail | 1 | 18710 | 20242 |
| YP_950690.1 | NC_008723_p28 | phage amidase | phrog_489 | endolysin | lysis | 1 | 24765 | 26147 |
| YP_950710.1 | NC_008723_p48 | hypothetical protein | phrog_398 | unknown function | unknown function | 1 | 35484 | 36158 |
| YP_950688.1 | NC_008723_p26 | hypothetical protein | phrog_2981 | unknown function | unknown function | 1 | 23914 | 24444 |
| YP_950714.1 | NC_008723_p52 | hypothetical protein | phrog_3161 | unknown function | unknown function | 1 | 38529 | 38750 |
| YP_950686.1 | NC_008723_p24 | hydrolase | phrog_759 | tail associated cell-wall hydrolase | other | 1 | 21202 | 23349 |
| YP_950671.1 | NC_008723_p9 | head morphogenesis protein | phrog_1161 | head-tail adaptor | connector | 1 | 7159 | 7473 |
| YP_950696.1 | NC_008723_p34 | hypothetical protein | phrog_87 | metallo-protease | other | -1 | 30890 | 31351 |
| YP_950712.1 | NC_008723_p50 | hypothetical protein | phrog_2289 | helicase loader | DNA, RNA and nucleotide metabolism | 1 | 36945 | 37304 |
| YP_950730.1 | NC_008723_p68 | regulator RinA | phrog_36 | transcriptional regulator | transcription regulation | 1 | 43478 | 43894 |
| YP_950681.1 | NC_008723_p19 | phage pre-neck appendage protein | phrog_4775 | pre-neck appendage protein | connector | 1 | 16044 | 18710 |
| YP_950857.1 | NC_008723_p1 | small terminase subunit | phrog_51 | terminase small subunit | head and packaging | 1 | 299 | 733 |
| YP_950705.1 | NC_008723_p43 | hypothetical protein | phrog_5815 | unknown function | unknown function | 1 | 33735 | 33911 |