| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_008798 |
Definition |
Staphylococcus phage phiETA2, complete genome. |
Molecule type |
DNA |
Genome structure |
circular |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Phietavirus. |
DB of origin |
REFSEQ |
Length |
43265 |
Host Name |
Staphylococcus aureus |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
69 |
%GC |
34.27 |
Number of singletons |
0 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_001004288.1 | NC_008798_p28 | hypothetical protein | phrog_201 | Panton-Valentine leukocicin | DNA, RNA and nucleotide metabolism | 1 | 12358 | 12729 |
| YP_001004278.1 | NC_008798_p18 | hypothetical protein | phrog_20102 | unknown function | unknown function | 1 | 8426 | 8629 |
| YP_001004293.1 | NC_008798_p33 | hypothetical protein | phrog_266 | unknown function | unknown function | 1 | 13738 | 13992 |
| YP_001004299.1 | NC_008798_p39 | hypothetical protein | phrog_1367 | unknown function | unknown function | 1 | 15442 | 15588 |
| YP_001004284.1 | NC_008798_p24 | hypothetical protein | phrog_809 | transcriptional regulator | transcription regulation | 1 | 11360 | 11518 |
| YP_001004263.1 | NC_008798_p3 | hypothetical protein | phrog_13276 | unknown function | unknown function | -1 | 1352 | 2257 |
| YP_001004292.1 | NC_008798_p32 | hypothetical protein | phrog_1034 | unknown function | unknown function | 1 | 13455 | 13745 |
| YP_001004283.1 | NC_008798_p23 | replicative DNA helicase | phrog_50 | DnaC-like helicase loader | DNA, RNA and nucleotide metabolism | 1 | 10587 | 11366 |
| YP_001004321.1 | NC_008798_p61 | hypothetical protein | phrog_300 | tail fiber protein | tail | 1 | 35627 | 36004 |
| YP_001004265.1 | NC_008798_p5 | ribosomal protein | phrog_1914 | unknown function | unknown function | -1 | 3042 | 3716 |
| YP_001004327.1 | NC_008798_p67 | holin protein | phrog_263 | holin | lysis | 1 | 40263 | 40538 |
| YP_001004269.1 | NC_008798_p9 | hypothetical protein | phrog_1796 | unknown function | unknown function | 1 | 5290 | 5514 |
| YP_001004261.1 | NC_008798_p1 | integrase | phrog_1 | integrase | integration and excision | -1 | 53 | 1102 |
| YP_001004305.1 | NC_008798_p45 | hypothetical protein | phrog_1431 | unknown function | unknown function | 1 | 20546 | 20716 |
| YP_001004300.1 | NC_008798_p40 | transcriptional activator RinA | phrog_36 | transcriptional regulator | transcription regulation | 1 | 15612 | 16034 |
| YP_001004279.1 | NC_008798_p19 | hypothetical protein | phrog_398 | unknown function | unknown function | 1 | 8650 | 9321 |
| YP_001004275.1 | NC_008798_p15 | hypothetical protein | phrog_946 | unknown function | unknown function | 1 | 7062 | 7283 |
| YP_001004295.1 | NC_008798_p35 | hypothetical protein | phrog_3521 | unknown function | unknown function | 1 | 14712 | 14885 |
| YP_001004304.1 | NC_008798_p44 | minor head protein | phrog_115 | minor head protein | head and packaging | 1 | 19479 | 20459 |
| YP_001004282.1 | NC_008798_p22 | Rep protein | phrog_428 | replication initiation protein | DNA, RNA and nucleotide metabolism | 1 | 9717 | 10577 |
| YP_001004326.1 | NC_008798_p66 | hypothetical protein | phrog_1262 | unknown function | unknown function | 1 | 39812 | 40207 |
| YP_001004319.1 | NC_008798_p59 | lytic system | phrog_287 | minor tail protein | tail | 1 | 31894 | 33804 |
| YP_001004313.1 | NC_008798_p53 | hypothetical protein | phrog_238 | major tail protein | tail | 1 | 24143 | 24724 |
| YP_001004307.1 | NC_008798_p47 | head protein | phrog_10 | major head protein | head and packaging | 1 | 21459 | 22433 |
| YP_001004276.1 | NC_008798_p16 | hypothetical protein | phrog_124 | Sak4-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 7276 | 8055 |
| YP_001004298.1 | NC_008798_p38 | transcriptional activator RinB | phrog_152 | RinB-like transcriptional activator | transcription regulation | 1 | 15253 | 15441 |
| YP_001004264.1 | NC_008798_p4 | hypothetical protein | phrog_888 | unknown function | unknown function | -1 | 2289 | 3020 |
| YP_001004308.1 | NC_008798_p48 | hypothetical protein | phrog_390 | Arc-like repressor | transcription regulation | 1 | 22455 | 22742 |
| YP_001004323.1 | NC_008798_p63 | hypothetical protein | phrog_276 | unknown function | unknown function | 1 | 36221 | 36520 |
| YP_001004297.1 | NC_008798_p37 | hypothetical protein | phrog_3885 | unknown function | unknown function | 1 | 15059 | 15265 |
| YP_001004267.1 | NC_008798_p7 | Cro protein | phrog_3 | transcriptional repressor | transcription regulation | 1 | 4328 | 4522 |
| YP_001004277.1 | NC_008798_p17 | hypothetical protein | phrog_378 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 8086 | 8637 |
| YP_001004314.1 | NC_008798_p54 | hypothetical protein | phrog_183 | tail chaperone protein | tail | 1 | 24786 | 25151 |
| YP_001004268.1 | NC_008798_p8 | anti-repressor protein | phrog_130 | anti-repressor Ant | transcription regulation | 1 | 4522 | 5289 |
| YP_001004309.1 | NC_008798_p49 | hypothetical protein | phrog_132 | head-tail adaptor | connector | 1 | 22751 | 23083 |
| YP_001004311.1 | NC_008798_p51 | hypothetical protein | phrog_5 | tail completion or Neck1 protein | connector | 1 | 23382 | 23729 |
| YP_001004328.1 | NC_008798_p68 | amidase | phrog_489 | endolysin | lysis | 1 | 40525 | 41937 |
| YP_001004271.1 | NC_008798_p11 | hypothetical protein | phrog_989 | unknown function | unknown function | 1 | 6017 | 6238 |
| YP_001004310.1 | NC_008798_p50 | hypothetical protein | phrog_348 | minor head protein | head and packaging | 1 | 23080 | 23382 |
| YP_001004289.1 | NC_008798_p29 | hypothetical protein | phrog_236 | nucleotide kinase | other | 1 | 12729 | 12986 |
| YP_001004273.1 | NC_008798_p13 | hypothetical protein | phrog_983 | unknown function | unknown function | 1 | 6485 | 6787 |
| YP_001004291.1 | NC_008798_p31 | hypothetical protein | phrog_258 | virulence associated | other | 1 | 13204 | 13446 |
| YP_001004294.1 | NC_008798_p34 | dUTP nucleotidohydrolase | phrog_135 | dUTPase | DNA, RNA and nucleotide metabolism | 1 | 14142 | 14675 |
| YP_001004286.1 | NC_008798_p26 | hypothetical protein | phrog_190 | Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 11763 | 12167 |
| YP_001004290.1 | NC_008798_p30 | hypothetical protein | phrog_987 | unknown function | unknown function | 1 | 12989 | 13189 |
| YP_001004285.1 | NC_008798_p25 | hypothetical protein | phrog_433 | unknown function | unknown function | 1 | 11531 | 11752 |
| YP_001004318.1 | NC_008798_p58 | hypothetical protein | phrog_663 | minor head protein | head and packaging | 1 | 29978 | 31879 |
| YP_001004272.1 | NC_008798_p12 | hypothetical protein | phrog_369 | unknown function | unknown function | 1 | 6231 | 6392 |
| YP_001004322.1 | NC_008798_p62 | hypothetical protein | phrog_134 | unknown function | unknown function | 1 | 36008 | 36181 |
| YP_001004281.1 | NC_008798_p21 | hypothetical protein | phrog_1090 | unknown function | unknown function | -1 | 9460 | 9741 |
| YP_001004280.1 | NC_008798_p20 | hypothetical protein | phrog_1902 | unknown function | unknown function | 1 | 9318 | 9467 |
| YP_001004306.1 | NC_008798_p46 | hypothetical protein | phrog_172 | head scaffolding protein | head and packaging | 1 | 20825 | 21445 |
| YP_001004302.1 | NC_008798_p42 | large terminase | phrog_2 | terminase large subunit | head and packaging | 1 | 16649 | 17926 |
| YP_001004296.1 | NC_008798_p36 | hypothetical protein | phrog_278 | transcriptional regulator | transcription regulation | 1 | 14902 | 15090 |
| YP_001004317.1 | NC_008798_p57 | hypothetical protein | phrog_33 | distal tail protein Dit | tail | 1 | 29022 | 29969 |
| YP_001004274.1 | NC_008798_p14 | hypothetical protein | phrog_401 | unknown function | unknown function | 1 | 6792 | 7052 |
| YP_001004266.1 | NC_008798_p6 | repressor | phrog_8 | transcriptional regulator | transcription regulation | -1 | 3733 | 4065 |
| YP_001004324.1 | NC_008798_p64 | cell wall hydrolase | phrog_759 | tail associated cell-wall hydrolase | other | 1 | 36657 | 38555 |
| YP_001004315.1 | NC_008798_p55 | hypothetical protein | phrog_441 | tail assembly chaperone | tail | 1 | 25181 | 25525 |
| YP_001004320.1 | NC_008798_p60 | hypothetical protein | phrog_257 | minor tail protein | tail | 1 | 33804 | 35627 |
| YP_001004287.1 | NC_008798_p27 | hypothetical protein | phrog_299 | unknown function | unknown function | 1 | 12172 | 12357 |
| YP_001004301.1 | NC_008798_p41 | small terminase | phrog_51 | terminase small subunit | head and packaging | 1 | 16147 | 16662 |
| YP_001004325.1 | NC_008798_p65 | tail fiber protein | phrog_1125 | tail fiber protein | tail | 1 | 38568 | 39806 |
| YP_001004329.1 | NC_008798_p69 | exfoliative toxin A | phrog_13651 | unknown function | unknown function | 1 | 42063 | 42905 |
| YP_001004262.1 | NC_008798_p2 | excisionase | phrog_16497 | excisionase | integration and excision | 1 | 1215 | 1415 |
| YP_001004312.1 | NC_008798_p52 | hypothetical protein | phrog_176 | tail terminator | connector | 1 | 23741 | 24124 |
| YP_001004316.1 | NC_008798_p56 | tail protein | phrog_58 | tail length tape measure protein | tail | 1 | 25542 | 29009 |
| YP_001004270.1 | NC_008798_p10 | hypothetical protein | phrog_2305 | unknown function | unknown function | 1 | 5554 | 6003 |
| YP_001004303.1 | NC_008798_p43 | portal protein | phrog_64 | portal protein | head and packaging | 1 | 17937 | 19472 |