functional categories (each PHROG annotation is associated to a category) | Notes | ||
head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
tail | lysis | other | - Scroll to zoom |
unknown function | - Click on a protein to see its PHROG |
Locus |
NC_008799 |
Definition |
Staphylococcus phage phiETA3, complete genome. |
Molecule type |
DNA |
Genome structure |
circular |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Phietavirus. |
DB of origin |
REFSEQ |
Length |
43282 |
Host Name |
Staphylococcus aureus |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
68 |
%GC |
34.89 |
Number of singletons |
1 |
Number of paralogs |
0 |
NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
---|---|---|---|---|---|---|---|---|
YP_001004373.1 | NC_008799_p44 | hypothetical protein | phrog_2881 | dCMP hydroxymethylase | DNA, RNA and nucleotide metabolism | 1 | 21212 | 21418 |
YP_001004389.1 | NC_008799_p60 | hypothetical protein | phrog_300 | tail fiber protein | tail | 1 | 35668 | 36045 |
YP_001004380.1 | NC_008799_p51 | tail protein | phrog_176 | tail terminator | connector | 1 | 24307 | 24732 |
YP_001004332.1 | NC_008799_p3 | hypothetical protein | phrog_13276 | unknown function | unknown function | -1 | 1351 | 2256 |
YP_001004364.1 | NC_008799_p35 | hypothetical protein | phrog_278 | transcriptional regulator | transcription regulation | 1 | 15295 | 15489 |
YP_001004371.1 | NC_008799_p42 | portal protein | phrog_64 | portal protein | head and packaging | 1 | 18864 | 20288 |
YP_001004363.1 | NC_008799_p34 | hypothetical protein | phrog_173 | nucleoside triphosphate pyrophosphohydrolase | DNA, RNA and nucleotide metabolism | 1 | 14722 | 15258 |
YP_001004350.1 | NC_008799_p21 | Rep protein | phrog_428 | replication initiation protein | DNA, RNA and nucleotide metabolism | 1 | 9774 | 10634 |
YP_001004378.1 | NC_008799_p49 | hypothetical protein | phrog_25 | head closure Hc1 | connector | 1 | 23559 | 23894 |
YP_001004384.1 | NC_008799_p55 | hypothetical protein | phrog_58 | tail length tape measure protein | tail | 1 | 26196 | 29081 |
YP_001004387.1 | NC_008799_p58 | hypothetical protein | phrog_287 | minor tail protein | tail | 1 | 31947 | 33845 |
YP_001004372.1 | NC_008799_p43 | minor head protein | phrog_115 | minor head protein | head and packaging | 1 | 20257 | 21210 |
YP_001004341.1 | NC_008799_p12 | hypothetical protein | phrog_369 | unknown function | unknown function | 1 | 6230 | 6391 |
YP_001004396.1 | NC_008799_p67 | amidase | phrog_489 | endolysin | lysis | 1 | 40542 | 41954 |
YP_001004362.1 | NC_008799_p33 | hypothetical protein | singleton | unknown function | unknown function | 1 | 14460 | 14729 |
YP_001004375.1 | NC_008799_p46 | major capsid protein | phrog_10 | major head protein | head and packaging | 1 | 22122 | 23036 |
YP_001004338.1 | NC_008799_p9 | hypothetical protein | phrog_1796 | unknown function | unknown function | 1 | 5289 | 5513 |
YP_001004366.1 | NC_008799_p37 | transcriptional activator RinB | phrog_152 | RinB-like transcriptional activator | transcription regulation | 1 | 16060 | 16233 |
YP_001004353.1 | NC_008799_p24 | hypothetical protein | phrog_433 | unknown function | unknown function | 1 | 11588 | 11809 |
YP_001004334.1 | NC_008799_p5 | hypothetical protein | phrog_1914 | unknown function | unknown function | -1 | 3041 | 3715 |
YP_001004381.1 | NC_008799_p52 | major tail protein | phrog_238 | major tail protein | tail | 1 | 24733 | 25290 |
YP_001004351.1 | NC_008799_p22 | replicative DNA helicase | phrog_50 | DnaC-like helicase loader | DNA, RNA and nucleotide metabolism | 1 | 10644 | 11423 |
YP_001004357.1 | NC_008799_p28 | hypothetical protein | phrog_201 | Panton-Valentine leukocicin | DNA, RNA and nucleotide metabolism | 1 | 12847 | 13203 |
YP_001004382.1 | NC_008799_p53 | hypothetical protein | phrog_183 | tail chaperone protein | tail | 1 | 25357 | 25863 |
YP_001004386.1 | NC_008799_p57 | hypothetical protein | phrog_663 | minor head protein | head and packaging | 1 | 30048 | 31934 |
YP_001004365.1 | NC_008799_p36 | hypothetical protein | phrog_20169 | membrane protein | moron, auxiliary metabolic gene and host takeover | 1 | 15489 | 16013 |
YP_001004367.1 | NC_008799_p38 | hypothetical protein | phrog_1367 | unknown function | unknown function | 1 | 16234 | 16380 |
YP_001004355.1 | NC_008799_p26 | hypothetical protein | phrog_299 | unknown function | unknown function | 1 | 12228 | 12413 |
YP_001004335.1 | NC_008799_p6 | repressor | phrog_8 | transcriptional regulator | transcription regulation | -1 | 3732 | 4064 |
YP_001004346.1 | NC_008799_p17 | ssDNA-binding protein | phrog_44 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 8249 | 8692 |
YP_001004388.1 | NC_008799_p59 | hypothetical protein | phrog_257 | minor tail protein | tail | 1 | 33845 | 35668 |
YP_001004352.1 | NC_008799_p23 | hypothetical protein | phrog_809 | transcriptional regulator | transcription regulation | 1 | 11417 | 11575 |
YP_001004383.1 | NC_008799_p54 | hypothetical protein | phrog_12040 | unknown function | unknown function | 1 | 26043 | 26192 |
YP_001004385.1 | NC_008799_p56 | hypothetical protein | phrog_33 | distal tail protein Dit | tail | 1 | 29096 | 30037 |
YP_001004369.1 | NC_008799_p40 | hypothetical protein | phrog_1595 | terminase small subunit | head and packaging | 1 | 17157 | 17651 |
YP_001004393.1 | NC_008799_p64 | tail fiber protein | phrog_1125 | tail fiber protein | tail | 1 | 38585 | 39823 |
YP_001004391.1 | NC_008799_p62 | hypothetical protein | phrog_276 | unknown function | unknown function | 1 | 36262 | 36561 |
YP_001004361.1 | NC_008799_p32 | hypothetical protein | phrog_266 | unknown function | unknown function | 1 | 14309 | 14572 |
YP_001004331.1 | NC_008799_p2 | excisionase | phrog_16497 | excisionase | integration and excision | 1 | 1214 | 1414 |
YP_001004390.1 | NC_008799_p61 | hypothetical protein | phrog_134 | unknown function | unknown function | 1 | 36049 | 36222 |
YP_001004344.1 | NC_008799_p15 | hypothetical protein | phrog_2205 | Mu Gam-like end protection | DNA, RNA and nucleotide metabolism | 1 | 7065 | 7601 |
YP_001004358.1 | NC_008799_p29 | hypothetical protein | phrog_258 | virulence associated | other | 1 | 13207 | 13449 |
YP_001004336.1 | NC_008799_p7 | Cro protein | phrog_3 | transcriptional repressor | transcription regulation | 1 | 4327 | 4521 |
YP_001004356.1 | NC_008799_p27 | hypothetical protein | phrog_1709 | unknown function | unknown function | 1 | 12414 | 12719 |
YP_001004343.1 | NC_008799_p14 | hypothetical protein | phrog_401 | unknown function | unknown function | 1 | 6792 | 7052 |
YP_001004347.1 | NC_008799_p18 | hypothetical protein | phrog_398 | unknown function | unknown function | 1 | 8704 | 9378 |
YP_001004349.1 | NC_008799_p20 | hypothetical protein | phrog_1090 | unknown function | unknown function | -1 | 9517 | 9798 |
YP_001004360.1 | NC_008799_p31 | hypothetical protein | phrog_742 | acetyltransferase | other | 1 | 13960 | 14325 |
YP_001004340.1 | NC_008799_p11 | hypothetical protein | phrog_989 | unknown function | unknown function | 1 | 6016 | 6237 |
YP_001004395.1 | NC_008799_p66 | holin protein | phrog_263 | holin | lysis | 1 | 40280 | 40555 |
YP_001004397.1 | NC_008799_p68 | exfoliative toxin A | phrog_13651 | unknown function | unknown function | 1 | 42080 | 42922 |
YP_001004379.1 | NC_008799_p50 | hypothetical protein | phrog_5 | tail completion or Neck1 protein | connector | 1 | 23845 | 24294 |
YP_001004376.1 | NC_008799_p47 | hypothetical protein | phrog_2406 | unknown function | unknown function | 1 | 23045 | 23191 |
YP_001004342.1 | NC_008799_p13 | hypothetical protein | phrog_983 | unknown function | unknown function | 1 | 6485 | 6787 |
YP_001004348.1 | NC_008799_p19 | hypothetical protein | phrog_1902 | unknown function | unknown function | 1 | 9375 | 9524 |
YP_001004345.1 | NC_008799_p16 | hypothetical protein | phrog_155 | Erf-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 7602 | 8252 |
YP_001004333.1 | NC_008799_p4 | hypothetical protein | phrog_888 | unknown function | unknown function | -1 | 2288 | 3013 |
YP_001004337.1 | NC_008799_p8 | anti-repressor protein | phrog_130 | anti-repressor Ant | transcription regulation | 1 | 4521 | 5288 |
YP_001004394.1 | NC_008799_p65 | hypothetical protein | phrog_1262 | unknown function | unknown function | 1 | 39829 | 40224 |
YP_001004359.1 | NC_008799_p30 | hypothetical protein | phrog_98 | unknown function | unknown function | 1 | 13514 | 13963 |
YP_001004374.1 | NC_008799_p45 | hypothetical protein | phrog_172 | head scaffolding protein | head and packaging | 1 | 21521 | 22105 |
YP_001004368.1 | NC_008799_p39 | transcriptional activator RinA | phrog_36 | transcriptional regulator | transcription regulation | 1 | 16404 | 16826 |
YP_001004370.1 | NC_008799_p41 | large terminase | phrog_2 | terminase large subunit | head and packaging | 1 | 17644 | 18867 |
YP_001004339.1 | NC_008799_p10 | hypothetical protein | phrog_2305 | unknown function | unknown function | 1 | 5553 | 6002 |
YP_001004392.1 | NC_008799_p63 | cell wall hydrolase | phrog_759 | tail associated cell-wall hydrolase | other | 1 | 36698 | 38572 |
YP_001004377.1 | NC_008799_p48 | head completion protein | phrog_1161 | head-tail adaptor | connector | 1 | 23197 | 23547 |
YP_001004354.1 | NC_008799_p25 | hypothetical protein | phrog_190 | Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 11819 | 12223 |
YP_001004330.1 | NC_008799_p1 | integrase | phrog_1 | integrase | integration and excision | -1 | 53 | 1102 |