Genomic map of Clostridium virus phiC2 (NC_009231)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_009231
Definition
Clostridium phage phiC2, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae; Lubbockvirus.
DB of origin
REFSEQ
Length
56538
Host Name
Clostridium difficile
Host domain
Bacteria
Is prophage?
undef
Number of proteins
82
%GC
28.72
Number of singletons
1
Number of paralogs
6

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_001110767.1 NC_009231_p49 antirepressor phrog_63 anti-repressor Ant transcription regulation 1 38239 39027
YP_001110773.1 NC_009231_p55 repressor phrog_3 transcriptional repressor transcription regulation 1 40970 41167
YP_001110771.1 NC_009231_p53 hypothetical protein phrog_9735 unknown function unknown function 1 40389 40769
YP_001110723.1 NC_009231_p5 hypothetical protein phrog_1865 unknown function unknown function 1 4871 5071
YP_001110784.1 NC_009231_p66 hypothetical protein phrog_7118 unknown function unknown function 1 46055 46537
YP_001110741.1 NC_009231_p23 hypothetical protein phrog_579 unknown function unknown function 1 18314 18574
YP_001110721.1 NC_009231_p3 portal protein phrog_64 portal protein head and packaging 1 2030 3469
YP_001110774.1 NC_009231_p56 hypothetical protein phrog_1877 DNA binding protein DNA, RNA and nucleotide metabolism 1 41197 41640
YP_001110783.1 NC_009231_p65 single strand DNA binding protein phrog_44 single strand DNA binding protein DNA, RNA and nucleotide metabolism 1 45553 45960
YP_001110743.1 NC_009231_p25 hypothetical protein phrog_521 tail protein tail 1 20041 20658
YP_001110785.1 NC_009231_p67 hypothetical protein phrog_1310 unknown function unknown function 1 46551 46916
YP_001110732.1 NC_009231_p14 core tail phrog_365 tail protein tail 1 9953 10423
YP_001110754.1 NC_009231_p36 amidase/endolysin phrog_435 endolysin lysis 1 28117 28929
YP_001110749.1 NC_009231_p31 hypothetical protein phrog_1626 rhodanese-related sulfurtransferase other 1 25882 26187
YP_001110782.1 NC_009231_p64 hypothetical protein phrog_3253 unknown function unknown function 1 45364 45537
YP_001110744.1 NC_009231_p26 tail fiber protein phrog_1162 tail fiber protein tail 1 20670 21695
YP_001110745.1 NC_009231_p27 hypothetical protein phrog_3321 rhodanese-related sulfurtransferase other 1 23445 23792
YP_001110761.1 NC_009231_p43 transcriptional regulator phrog_1077 transcriptional regulator transcription regulation 1 34490 34873
YP_001110746.1 NC_009231_p28 hypothetical protein phrog_7154 unknown function unknown function 1 24008 24199
YP_001110794.1 NC_009231_p76 hypothetical protein phrog_463 anti-repressor transcription regulation 1 51916 52764
YP_001110789.1 NC_009231_p71 hypothetical protein phrog_2462 unknown function unknown function 1 48631 48840
YP_001110727.1 NC_009231_p9 hypothetical protein phrog_132 head-tail adaptor connector 1 6854 7255
YP_001110780.1 NC_009231_p62 essential recombination function protein phrog_155 Erf-like ssDNA annealing protein DNA, RNA and nucleotide metabolism 1 43804 44412
YP_001110764.1 NC_009231_p46 cI repressor phrog_3 transcriptional repressor transcription regulation -1 36753 36974
YP_001110768.1 NC_009231_p50 hypothetical protein phrog_228 Arc-like repressor transcription regulation -1 39233 39436
YP_001110759.1 NC_009231_p41 hypothetical protein phrog_2569 unknown function unknown function -1 32905 33093
YP_001110788.1 NC_009231_p70 cytosine-C5 specific DNA methylase phrog_116 DNA methyltransferase other 1 47528 48478
YP_001110722.1 NC_009231_p4 head morphogenesis protein phrog_115 minor head protein head and packaging 1 3459 4856
YP_001110738.1 NC_009231_p20 tail tape measure protein phrog_1068 tail length tape measure protein tail 1 13409 15697
YP_001110736.1 NC_009231_p18 hypothetical protein phrog_806 unknown function unknown function 1 12102 12629
YP_001110737.1 NC_009231_p19 hypothetical protein phrog_2546 unknown function unknown function 1 12771 13331
YP_001110762.1 NC_009231_p44 integrase phrog_1 integrase integration and excision -1 35184 36398
YP_001110752.1 NC_009231_p34 holin phrog_1129 holin lysis 1 26657 26914
YP_001110755.1 NC_009231_p37 hypothetical protein phrog_5384 unknown function unknown function 1 29010 29372
YP_001110769.1 NC_009231_p51 hypothetical protein phrog_582 Arc-like repressor transcription regulation 1 39553 39699
YP_001110800.1 NC_009231_p82 hypothetical protein phrog_4083 unknown function unknown function 1 55572 55799
YP_001110798.1 NC_009231_p80 hypothetical protein phrog_1758 acetyltransferase other 1 54308 54886
YP_001110757.1 NC_009231_p39 hypothetical protein phrog_6174 unknown function unknown function -1 30120 31706
YP_001110779.1 NC_009231_p61 Gp157-like protein phrog_253 Mu Gam-like end protection DNA, RNA and nucleotide metabolism 1 43285 43794
YP_001110756.1 NC_009231_p38 hypothetical protein phrog_5951 unknown function unknown function 1 29538 30056
YP_001110735.1 NC_009231_p17 hypothetical protein phrog_1664 unknown function unknown function 1 11809 12042
YP_001110720.1 NC_009231_p2 terminase large subunit phrog_2 terminase large subunit head and packaging 1 771 2024
YP_001110777.1 NC_009231_p59 hypothetical protein phrog_1564 unknown function unknown function 1 42562 42789
YP_001110747.1 NC_009231_p29 hypothetical protein phrog_3361 unknown function unknown function 1 24213 24845
YP_001110729.1 NC_009231_p11 hypothetical protein phrog_5 tail completion or Neck1 protein connector 1 7596 8021
YP_001110793.1 NC_009231_p75 endodeoxyribonuclease RusA phrog_140 RusA-like Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 51407 51814
YP_001110797.1 NC_009231_p79 hypothetical protein phrog_3291 unknown function unknown function 1 54081 54275
YP_001110728.1 NC_009231_p10 hypothetical protein phrog_615 head-tail adaptor connector 1 7249 7596
YP_001110760.1 NC_009231_p42 transcriptional regulator phrog_1077 transcriptional regulator transcription regulation 1 34054 34380
YP_001110781.1 NC_009231_p63 DnaD phrog_186 DnaD-like helicase loader DNA, RNA and nucleotide metabolism 1 44413 45303
YP_001110742.1 NC_009231_p24 hypothetical protein phrog_6 baseplate wedge subunit tail 1 19011 20048
YP_001110734.1 NC_009231_p16 hypothetical protein phrog_389 tail protein XkdN-like tail 1 10738 11178
YP_001110733.1 NC_009231_p15 hypothetical protein phrog_3466 unknown function unknown function 1 10476 10733
YP_001110724.1 NC_009231_p6 scaffold protein phrog_194 head scaffolding protein head and packaging 1 5137 5700
YP_001110731.1 NC_009231_p13 sheath tail protein phrog_279 tail sheath tail 1 8621 9931
YP_001110792.1 NC_009231_p74 hypothetical protein phrog_4572 unknown function unknown function 1 50322 50675
YP_001110772.1 NC_009231_p54 hypothetical protein phrog_5079 unknown function unknown function -1 40759 40911
YP_001110766.1 NC_009231_p48 hypothetical protein phrog_3 transcriptional repressor transcription regulation 1 38063 38239
YP_001110765.1 NC_009231_p47 repressor phrog_8 transcriptional regulator transcription regulation -1 37432 37827
YP_001110750.1 NC_009231_p32 hypothetical protein phrog_1243 unknown function unknown function 1 26187 26369
YP_001110778.1 NC_009231_p60 hypothetical protein phrog_2219 unknown function unknown function 1 42887 43201
YP_001110751.1 NC_009231_p33 hypothetical protein phrog_1193 hemolysin other 1 26407 26637
YP_001110739.1 NC_009231_p21 LysM phrog_380 endolysin lysis 1 15714 16415
YP_001110740.1 NC_009231_p22 hydrolase phrog_400 tail protein tail 1 16408 18300
YP_001110763.1 NC_009231_p45 hypothetical protein phrog_8194 unknown function unknown function -1 36488 36703
YP_001110726.1 NC_009231_p8 hypothetical protein phrog_1378 unknown function unknown function 1 6611 6844
YP_001110796.1 NC_009231_p78 hypothetical protein singleton unknown function unknown function -1 53341 53388
YP_001110725.1 NC_009231_p7 main capsid protein phrog_422 major head protein head and packaging 1 5712 6611
YP_001110790.1 NC_009231_p72 hypothetical protein phrog_1974 unknown function unknown function 1 48852 49856
YP_001110775.1 NC_009231_p57 hypothetical protein phrog_582 Arc-like repressor transcription regulation -1 42091 42270
YP_001110787.1 NC_009231_p69 hypothetical protein phrog_8001 unknown function unknown function 1 47052 47369
YP_001110776.1 NC_009231_p58 hypothetical protein phrog_582 Arc-like repressor transcription regulation 1 42404 42562
YP_001110799.1 NC_009231_p81 hypothetical protein phrog_2211 unknown function unknown function -1 55131 55448
YP_001110795.1 NC_009231_p77 hypothetical protein phrog_36 transcriptional regulator transcription regulation 1 52867 53355
YP_001110753.1 NC_009231_p35 abortive infection bacteriophage resistance protein ORF 37 phrog_2158 abortive infection resistance protein moron, auxiliary metabolic gene and host takeover 1 27175 28038
YP_001110770.1 NC_009231_p52 antirepressor phrog_463 anti-repressor transcription regulation 1 39692 40330
YP_001110730.1 NC_009231_p12 hypothetical protein phrog_525 unknown function unknown function 1 8014 8451
YP_001110748.1 NC_009231_p30 hypothetical protein phrog_6715 unknown function unknown function 1 25313 25858
YP_001110786.1 NC_009231_p68 hypothetical protein phrog_2961 unknown function unknown function 1 46916 47050
YP_001110719.1 NC_009231_p1 terminase small subunit phrog_509 terminase small subunit head and packaging 1 101 793
YP_001110758.1 NC_009231_p40 DUF955 phrog_87 metallo-protease other -1 31682 32203
YP_001110791.1 NC_009231_p73 hypothetical protein phrog_32060 unknown function unknown function 1 50097 50267