| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_009231 |
Definition |
Clostridium phage phiC2, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae; Lubbockvirus. |
DB of origin |
REFSEQ |
Length |
56538 |
Host Name |
Clostridium difficile |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
82 |
%GC |
28.72 |
Number of singletons |
1 |
Number of paralogs |
6 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_001110767.1 | NC_009231_p49 | antirepressor | phrog_63 | anti-repressor Ant | transcription regulation | 1 | 38239 | 39027 |
| YP_001110773.1 | NC_009231_p55 | repressor | phrog_3 | transcriptional repressor | transcription regulation | 1 | 40970 | 41167 |
| YP_001110771.1 | NC_009231_p53 | hypothetical protein | phrog_9735 | unknown function | unknown function | 1 | 40389 | 40769 |
| YP_001110723.1 | NC_009231_p5 | hypothetical protein | phrog_1865 | unknown function | unknown function | 1 | 4871 | 5071 |
| YP_001110784.1 | NC_009231_p66 | hypothetical protein | phrog_7118 | unknown function | unknown function | 1 | 46055 | 46537 |
| YP_001110741.1 | NC_009231_p23 | hypothetical protein | phrog_579 | unknown function | unknown function | 1 | 18314 | 18574 |
| YP_001110721.1 | NC_009231_p3 | portal protein | phrog_64 | portal protein | head and packaging | 1 | 2030 | 3469 |
| YP_001110774.1 | NC_009231_p56 | hypothetical protein | phrog_1877 | DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 41197 | 41640 |
| YP_001110783.1 | NC_009231_p65 | single strand DNA binding protein | phrog_44 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 45553 | 45960 |
| YP_001110743.1 | NC_009231_p25 | hypothetical protein | phrog_521 | tail protein | tail | 1 | 20041 | 20658 |
| YP_001110785.1 | NC_009231_p67 | hypothetical protein | phrog_1310 | unknown function | unknown function | 1 | 46551 | 46916 |
| YP_001110732.1 | NC_009231_p14 | core tail | phrog_365 | tail protein | tail | 1 | 9953 | 10423 |
| YP_001110754.1 | NC_009231_p36 | amidase/endolysin | phrog_435 | endolysin | lysis | 1 | 28117 | 28929 |
| YP_001110749.1 | NC_009231_p31 | hypothetical protein | phrog_1626 | rhodanese-related sulfurtransferase | other | 1 | 25882 | 26187 |
| YP_001110782.1 | NC_009231_p64 | hypothetical protein | phrog_3253 | unknown function | unknown function | 1 | 45364 | 45537 |
| YP_001110744.1 | NC_009231_p26 | tail fiber protein | phrog_1162 | tail fiber protein | tail | 1 | 20670 | 21695 |
| YP_001110745.1 | NC_009231_p27 | hypothetical protein | phrog_3321 | rhodanese-related sulfurtransferase | other | 1 | 23445 | 23792 |
| YP_001110761.1 | NC_009231_p43 | transcriptional regulator | phrog_1077 | transcriptional regulator | transcription regulation | 1 | 34490 | 34873 |
| YP_001110746.1 | NC_009231_p28 | hypothetical protein | phrog_7154 | unknown function | unknown function | 1 | 24008 | 24199 |
| YP_001110794.1 | NC_009231_p76 | hypothetical protein | phrog_463 | anti-repressor | transcription regulation | 1 | 51916 | 52764 |
| YP_001110789.1 | NC_009231_p71 | hypothetical protein | phrog_2462 | unknown function | unknown function | 1 | 48631 | 48840 |
| YP_001110727.1 | NC_009231_p9 | hypothetical protein | phrog_132 | head-tail adaptor | connector | 1 | 6854 | 7255 |
| YP_001110780.1 | NC_009231_p62 | essential recombination function protein | phrog_155 | Erf-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 43804 | 44412 |
| YP_001110764.1 | NC_009231_p46 | cI repressor | phrog_3 | transcriptional repressor | transcription regulation | -1 | 36753 | 36974 |
| YP_001110768.1 | NC_009231_p50 | hypothetical protein | phrog_228 | Arc-like repressor | transcription regulation | -1 | 39233 | 39436 |
| YP_001110759.1 | NC_009231_p41 | hypothetical protein | phrog_2569 | unknown function | unknown function | -1 | 32905 | 33093 |
| YP_001110788.1 | NC_009231_p70 | cytosine-C5 specific DNA methylase | phrog_116 | DNA methyltransferase | other | 1 | 47528 | 48478 |
| YP_001110722.1 | NC_009231_p4 | head morphogenesis protein | phrog_115 | minor head protein | head and packaging | 1 | 3459 | 4856 |
| YP_001110738.1 | NC_009231_p20 | tail tape measure protein | phrog_1068 | tail length tape measure protein | tail | 1 | 13409 | 15697 |
| YP_001110736.1 | NC_009231_p18 | hypothetical protein | phrog_806 | unknown function | unknown function | 1 | 12102 | 12629 |
| YP_001110737.1 | NC_009231_p19 | hypothetical protein | phrog_2546 | unknown function | unknown function | 1 | 12771 | 13331 |
| YP_001110762.1 | NC_009231_p44 | integrase | phrog_1 | integrase | integration and excision | -1 | 35184 | 36398 |
| YP_001110752.1 | NC_009231_p34 | holin | phrog_1129 | holin | lysis | 1 | 26657 | 26914 |
| YP_001110755.1 | NC_009231_p37 | hypothetical protein | phrog_5384 | unknown function | unknown function | 1 | 29010 | 29372 |
| YP_001110769.1 | NC_009231_p51 | hypothetical protein | phrog_582 | Arc-like repressor | transcription regulation | 1 | 39553 | 39699 |
| YP_001110800.1 | NC_009231_p82 | hypothetical protein | phrog_4083 | unknown function | unknown function | 1 | 55572 | 55799 |
| YP_001110798.1 | NC_009231_p80 | hypothetical protein | phrog_1758 | acetyltransferase | other | 1 | 54308 | 54886 |
| YP_001110757.1 | NC_009231_p39 | hypothetical protein | phrog_6174 | unknown function | unknown function | -1 | 30120 | 31706 |
| YP_001110779.1 | NC_009231_p61 | Gp157-like protein | phrog_253 | Mu Gam-like end protection | DNA, RNA and nucleotide metabolism | 1 | 43285 | 43794 |
| YP_001110756.1 | NC_009231_p38 | hypothetical protein | phrog_5951 | unknown function | unknown function | 1 | 29538 | 30056 |
| YP_001110735.1 | NC_009231_p17 | hypothetical protein | phrog_1664 | unknown function | unknown function | 1 | 11809 | 12042 |
| YP_001110720.1 | NC_009231_p2 | terminase large subunit | phrog_2 | terminase large subunit | head and packaging | 1 | 771 | 2024 |
| YP_001110777.1 | NC_009231_p59 | hypothetical protein | phrog_1564 | unknown function | unknown function | 1 | 42562 | 42789 |
| YP_001110747.1 | NC_009231_p29 | hypothetical protein | phrog_3361 | unknown function | unknown function | 1 | 24213 | 24845 |
| YP_001110729.1 | NC_009231_p11 | hypothetical protein | phrog_5 | tail completion or Neck1 protein | connector | 1 | 7596 | 8021 |
| YP_001110793.1 | NC_009231_p75 | endodeoxyribonuclease RusA | phrog_140 | RusA-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 51407 | 51814 |
| YP_001110797.1 | NC_009231_p79 | hypothetical protein | phrog_3291 | unknown function | unknown function | 1 | 54081 | 54275 |
| YP_001110728.1 | NC_009231_p10 | hypothetical protein | phrog_615 | head-tail adaptor | connector | 1 | 7249 | 7596 |
| YP_001110760.1 | NC_009231_p42 | transcriptional regulator | phrog_1077 | transcriptional regulator | transcription regulation | 1 | 34054 | 34380 |
| YP_001110781.1 | NC_009231_p63 | DnaD | phrog_186 | DnaD-like helicase loader | DNA, RNA and nucleotide metabolism | 1 | 44413 | 45303 |
| YP_001110742.1 | NC_009231_p24 | hypothetical protein | phrog_6 | baseplate wedge subunit | tail | 1 | 19011 | 20048 |
| YP_001110734.1 | NC_009231_p16 | hypothetical protein | phrog_389 | tail protein XkdN-like | tail | 1 | 10738 | 11178 |
| YP_001110733.1 | NC_009231_p15 | hypothetical protein | phrog_3466 | unknown function | unknown function | 1 | 10476 | 10733 |
| YP_001110724.1 | NC_009231_p6 | scaffold protein | phrog_194 | head scaffolding protein | head and packaging | 1 | 5137 | 5700 |
| YP_001110731.1 | NC_009231_p13 | sheath tail protein | phrog_279 | tail sheath | tail | 1 | 8621 | 9931 |
| YP_001110792.1 | NC_009231_p74 | hypothetical protein | phrog_4572 | unknown function | unknown function | 1 | 50322 | 50675 |
| YP_001110772.1 | NC_009231_p54 | hypothetical protein | phrog_5079 | unknown function | unknown function | -1 | 40759 | 40911 |
| YP_001110766.1 | NC_009231_p48 | hypothetical protein | phrog_3 | transcriptional repressor | transcription regulation | 1 | 38063 | 38239 |
| YP_001110765.1 | NC_009231_p47 | repressor | phrog_8 | transcriptional regulator | transcription regulation | -1 | 37432 | 37827 |
| YP_001110750.1 | NC_009231_p32 | hypothetical protein | phrog_1243 | unknown function | unknown function | 1 | 26187 | 26369 |
| YP_001110778.1 | NC_009231_p60 | hypothetical protein | phrog_2219 | unknown function | unknown function | 1 | 42887 | 43201 |
| YP_001110751.1 | NC_009231_p33 | hypothetical protein | phrog_1193 | hemolysin | other | 1 | 26407 | 26637 |
| YP_001110739.1 | NC_009231_p21 | LysM | phrog_380 | endolysin | lysis | 1 | 15714 | 16415 |
| YP_001110740.1 | NC_009231_p22 | hydrolase | phrog_400 | tail protein | tail | 1 | 16408 | 18300 |
| YP_001110763.1 | NC_009231_p45 | hypothetical protein | phrog_8194 | unknown function | unknown function | -1 | 36488 | 36703 |
| YP_001110726.1 | NC_009231_p8 | hypothetical protein | phrog_1378 | unknown function | unknown function | 1 | 6611 | 6844 |
| YP_001110796.1 | NC_009231_p78 | hypothetical protein | singleton | unknown function | unknown function | -1 | 53341 | 53388 |
| YP_001110725.1 | NC_009231_p7 | main capsid protein | phrog_422 | major head protein | head and packaging | 1 | 5712 | 6611 |
| YP_001110790.1 | NC_009231_p72 | hypothetical protein | phrog_1974 | unknown function | unknown function | 1 | 48852 | 49856 |
| YP_001110775.1 | NC_009231_p57 | hypothetical protein | phrog_582 | Arc-like repressor | transcription regulation | -1 | 42091 | 42270 |
| YP_001110787.1 | NC_009231_p69 | hypothetical protein | phrog_8001 | unknown function | unknown function | 1 | 47052 | 47369 |
| YP_001110776.1 | NC_009231_p58 | hypothetical protein | phrog_582 | Arc-like repressor | transcription regulation | 1 | 42404 | 42562 |
| YP_001110799.1 | NC_009231_p81 | hypothetical protein | phrog_2211 | unknown function | unknown function | -1 | 55131 | 55448 |
| YP_001110795.1 | NC_009231_p77 | hypothetical protein | phrog_36 | transcriptional regulator | transcription regulation | 1 | 52867 | 53355 |
| YP_001110753.1 | NC_009231_p35 | abortive infection bacteriophage resistance protein ORF 37 | phrog_2158 | abortive infection resistance protein | moron, auxiliary metabolic gene and host takeover | 1 | 27175 | 28038 |
| YP_001110770.1 | NC_009231_p52 | antirepressor | phrog_463 | anti-repressor | transcription regulation | 1 | 39692 | 40330 |
| YP_001110730.1 | NC_009231_p12 | hypothetical protein | phrog_525 | unknown function | unknown function | 1 | 8014 | 8451 |
| YP_001110748.1 | NC_009231_p30 | hypothetical protein | phrog_6715 | unknown function | unknown function | 1 | 25313 | 25858 |
| YP_001110786.1 | NC_009231_p68 | hypothetical protein | phrog_2961 | unknown function | unknown function | 1 | 46916 | 47050 |
| YP_001110719.1 | NC_009231_p1 | terminase small subunit | phrog_509 | terminase small subunit | head and packaging | 1 | 101 | 793 |
| YP_001110758.1 | NC_009231_p40 | DUF955 | phrog_87 | metallo-protease | other | -1 | 31682 | 32203 |
| YP_001110791.1 | NC_009231_p73 | hypothetical protein | phrog_32060 | unknown function | unknown function | 1 | 50097 | 50267 |