Genomic map of Salmonella phage SETP3 (NC_009232)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_009232
Definition
Salmonella phage SETP3, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Guernseyvirinae; Jerseyvirus.
DB of origin
REFSEQ
Length
42572
Host Name
Salmonella
Host domain
Bacteria
Is prophage?
undef
Number of proteins
63
%GC
49.85
Number of singletons
0
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_001110847.1 NC_009232_p20 regulatory protein phrog_63 anti-repressor Ant transcription regulation -1 12728 13399
YP_001110807.1 NC_009232_p35 hypothetical protein phrog_4879 unknown function unknown function -1 27199 27390
YP_001110820.2 NC_009232_p52 hypothetical protein phrog_4947 unknown function unknown function 1 39227 39604
YP_001110806.1 NC_009232_p34 intein containing helicase phrog_62 DNA helicase DNA, RNA and nucleotide metabolism -1 24737 27202
YP_008859655.1 NC_009232_p47 hypothetical protein phrog_12538 unknown function unknown function 1 37910 38113
YP_001110849.1 NC_009232_p22 hypothetical protein phrog_704 DNA repair exonuclease DNA, RNA and nucleotide metabolism -1 13812 14966
YP_001110833.1 NC_009232_p5 head morphogenesis protein phrog_241 head morphogenesis head and packaging 1 4146 5189
YP_001110853.1 NC_009232_p26 tail length tape measure protein phrog_1538 tail length tape measure protein tail 1 16134 18458
YP_008859652.1 NC_009232_p40 hypothetical protein phrog_13603 unknown function unknown function -1 32264 32440
YP_001110842.1 NC_009232_p15 hypothetical protein phrog_3614 unknown function unknown function 1 9751 10356
YP_001110830.1 NC_009232_p2 terminase large subunit phrog_2 terminase large subunit head and packaging 1 536 1807
YP_008859653.1 NC_009232_p45 hypothetical protein phrog_5169 unknown function unknown function -1 37052 37285
YP_001110804.1 NC_009232_p32 tailspike protein phrog_1819 tail spike protein tail 1 22397 24451
YP_001110823.1 NC_009232_p55 endolysin phrog_7 endolysin lysis 1 40234 40722
YP_001110845.1 NC_009232_p18 hypothetical protein phrog_179 tail terminator connector 1 11107 11526
YP_001110852.1 NC_009232_p25 hypothetical protein phrog_4557 unknown function unknown function 1 15821 16156
YP_001110816.2 NC_009232_p27 hypothetical protein phrog_384 virion structural protein head and packaging 1 18460 18960
YP_008859654.1 NC_009232_p46 hypothetical protein phrog_66 excisionase and transcriptional regulator integration and excision -1 37282 37452
YP_001110808.1 NC_009232_p36 hypothetical protein phrog_93 endonuclease DNA, RNA and nucleotide metabolism -1 27422 27709
YP_001110850.1 NC_009232_p23 hypothetical protein phrog_1039 immunity to superinfection moron, auxiliary metabolic gene and host takeover -1 15029 15208
YP_001110835.1 NC_009232_p7 hypothetical protein phrog_2536 Rz-like spanin lysis 1 5969 6358
YP_001110837.1 NC_009232_p10 major capsid protein phrog_247 major head protein head and packaging 1 7254 8303
YP_001110809.2 NC_009232_p37 NHN endonuclease phrog_99 HNH endonuclease DNA, RNA and nucleotide metabolism -1 27699 28196
YP_008859656.1 NC_009232_p49 hypothetical protein phrog_16814 unknown function unknown function 1 38492 38599
YP_001110827.1 NC_009232_p60 hypothetical protein phrog_10200 unknown function unknown function 1 41566 41715
YP_001110831.1 NC_009232_p3 portal protein phrog_145 portal protein head and packaging 1 1820 3289
YP_008859658.1 NC_009232_p61 NinH-like protein phrog_268 unknown function unknown function 1 41712 41936
YP_008859651.1 NC_009232_p29 hypothetical protein phrog_329 minor tail protein tail 1 19469 19834
YP_001110817.1 NC_009232_p48 hypothetical protein phrog_4090 unknown function unknown function 1 38120 38386
YP_008859650.1 NC_009232_p8 hypothetical protein phrog_1267 Rz-like spanin lysis 1 6201 6464
YP_001110829.1 NC_009232_p1 terminase small subunit phrog_3064 terminase head and packaging 1 1 546
YP_001110832.1 NC_009232_p4 hypothetical protein phrog_6095 amidase lysis -1 3319 3969
YP_001110848.1 NC_009232_p21 hypothetical protein phrog_2452 unknown function unknown function -1 13512 13742
YP_001110843.1 NC_009232_p16 hypothetical protein phrog_161 head closure Hc1 connector 1 10356 10715
YP_001110840.1 NC_009232_p13 hypothetical protein phrog_4451 unknown function unknown function 1 9047 9235
YP_001110801.1 NC_009232_p28 hypothetical protein phrog_396 minor tail protein tail 1 18957 19472
YP_001110851.1 NC_009232_p24 hypothetical protein phrog_313 Tail assembly chaperone tail 1 15378 15794
YP_001110838.1 NC_009232_p11 hypothetical protein phrog_4366 head fiber protein head and packaging 1 8319 8648
YP_001110814.1 NC_009232_p43 hypothetical protein phrog_3 transcriptional repressor transcription regulation 1 34576 34794
YP_001110834.1 NC_009232_p6 tail protein phrog_3945 Hoc-like head decoration head and packaging 1 5192 5650
YP_001110803.2 NC_009232_p31 hypothetical protein phrog_469 tail protein tail 1 20639 22384
YP_001110813.1 NC_009232_p42 hypothetical protein phrog_3127 unknown function unknown function -1 33906 34442
YP_001110818.1 NC_009232_p50 hypothetical protein phrog_9384 unknown function unknown function 1 38794 38958
YP_001110821.1 NC_009232_p53 hypothetical protein phrog_2359 holin lysis 1 39683 39964
YP_001110815.1 NC_009232_p44 primase/helicase protein phrog_3228 replicative helicase-primase DNA, RNA and nucleotide metabolism -1 34809 36995
YP_001110825.1 NC_009232_p57 hypothetical protein phrog_3002 unknown function unknown function 1 41080 41238
YP_001110839.1 NC_009232_p12 major tail subunit phrog_4069 Hoc-like head decoration head and packaging 1 8660 9010
YP_001110846.1 NC_009232_p19 tail protein phrog_290 minor tail protein tail 1 11526 12695
YP_001110822.1 NC_009232_p54 class I holin phrog_2508 holin lysis 1 39966 40253
YP_008859659.1 NC_009232_p62 hypothetical protein phrog_2531 unknown function unknown function 1 41936 42235
YP_001110805.1 NC_009232_p33 hypothetical protein phrog_5915 unknown function unknown function -1 24570 24740
YP_001110810.1 NC_009232_p38 DNA polymerase family A phrog_17 DNA polymerase DNA, RNA and nucleotide metabolism -1 28400 31498
YP_001110802.1 NC_009232_p30 tail fiber protein phrog_31307 tail protein tail 1 19825 20646
YP_001110824.1 NC_009232_p56 hypothetical protein phrog_2180 unknown function unknown function 1 40907 41083
YP_001110836.1 NC_009232_p9 scaffold protein phrog_206 head scaffolding protein head and packaging 1 6543 7250
YP_001110811.1 NC_009232_p39 hypothetical protein phrog_112 Gp2.5-like ssDNA binding protein and ssDNA annealing protein DNA, RNA and nucleotide metabolism -1 31556 32182
YP_008859657.1 NC_009232_p58 hypothetical protein phrog_4684 unknown function unknown function 1 41235 41390
YP_001110828.1 NC_009232_p63 hypothetical protein phrog_10134 unknown function unknown function 1 42249 42479
YP_001110844.1 NC_009232_p17 hypothetical protein phrog_169 tail completion or Neck1 protein connector 1 10712 11107
YP_001110826.1 NC_009232_p59 NinZ-like protein phrog_1402 unknown function unknown function 1 41387 41569
YP_001110841.1 NC_009232_p14 hypothetical protein phrog_477 head-tail adaptor Ad1 connector 1 9239 9748
YP_001110812.1 NC_009232_p41 hypothetical protein phrog_69 exonuclease DNA, RNA and nucleotide metabolism -1 32437 33864
YP_001110819.1 NC_009232_p51 hypothetical protein phrog_3766 unknown function unknown function 1 39021 39224