| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_009232 |
Definition |
Salmonella phage SETP3, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Guernseyvirinae; Jerseyvirus. |
DB of origin |
REFSEQ |
Length |
42572 |
Host Name |
Salmonella |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
63 |
%GC |
49.85 |
Number of singletons |
0 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_001110847.1 | NC_009232_p20 | regulatory protein | phrog_63 | anti-repressor Ant | transcription regulation | -1 | 12728 | 13399 |
| YP_001110807.1 | NC_009232_p35 | hypothetical protein | phrog_4879 | unknown function | unknown function | -1 | 27199 | 27390 |
| YP_001110820.2 | NC_009232_p52 | hypothetical protein | phrog_4947 | unknown function | unknown function | 1 | 39227 | 39604 |
| YP_001110806.1 | NC_009232_p34 | intein containing helicase | phrog_62 | DNA helicase | DNA, RNA and nucleotide metabolism | -1 | 24737 | 27202 |
| YP_008859655.1 | NC_009232_p47 | hypothetical protein | phrog_12538 | unknown function | unknown function | 1 | 37910 | 38113 |
| YP_001110849.1 | NC_009232_p22 | hypothetical protein | phrog_704 | DNA repair exonuclease | DNA, RNA and nucleotide metabolism | -1 | 13812 | 14966 |
| YP_001110833.1 | NC_009232_p5 | head morphogenesis protein | phrog_241 | head morphogenesis | head and packaging | 1 | 4146 | 5189 |
| YP_001110853.1 | NC_009232_p26 | tail length tape measure protein | phrog_1538 | tail length tape measure protein | tail | 1 | 16134 | 18458 |
| YP_008859652.1 | NC_009232_p40 | hypothetical protein | phrog_13603 | unknown function | unknown function | -1 | 32264 | 32440 |
| YP_001110842.1 | NC_009232_p15 | hypothetical protein | phrog_3614 | unknown function | unknown function | 1 | 9751 | 10356 |
| YP_001110830.1 | NC_009232_p2 | terminase large subunit | phrog_2 | terminase large subunit | head and packaging | 1 | 536 | 1807 |
| YP_008859653.1 | NC_009232_p45 | hypothetical protein | phrog_5169 | unknown function | unknown function | -1 | 37052 | 37285 |
| YP_001110804.1 | NC_009232_p32 | tailspike protein | phrog_1819 | tail spike protein | tail | 1 | 22397 | 24451 |
| YP_001110823.1 | NC_009232_p55 | endolysin | phrog_7 | endolysin | lysis | 1 | 40234 | 40722 |
| YP_001110845.1 | NC_009232_p18 | hypothetical protein | phrog_179 | tail terminator | connector | 1 | 11107 | 11526 |
| YP_001110852.1 | NC_009232_p25 | hypothetical protein | phrog_4557 | unknown function | unknown function | 1 | 15821 | 16156 |
| YP_001110816.2 | NC_009232_p27 | hypothetical protein | phrog_384 | virion structural protein | head and packaging | 1 | 18460 | 18960 |
| YP_008859654.1 | NC_009232_p46 | hypothetical protein | phrog_66 | excisionase and transcriptional regulator | integration and excision | -1 | 37282 | 37452 |
| YP_001110808.1 | NC_009232_p36 | hypothetical protein | phrog_93 | endonuclease | DNA, RNA and nucleotide metabolism | -1 | 27422 | 27709 |
| YP_001110850.1 | NC_009232_p23 | hypothetical protein | phrog_1039 | immunity to superinfection | moron, auxiliary metabolic gene and host takeover | -1 | 15029 | 15208 |
| YP_001110835.1 | NC_009232_p7 | hypothetical protein | phrog_2536 | Rz-like spanin | lysis | 1 | 5969 | 6358 |
| YP_001110837.1 | NC_009232_p10 | major capsid protein | phrog_247 | major head protein | head and packaging | 1 | 7254 | 8303 |
| YP_001110809.2 | NC_009232_p37 | NHN endonuclease | phrog_99 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 27699 | 28196 |
| YP_008859656.1 | NC_009232_p49 | hypothetical protein | phrog_16814 | unknown function | unknown function | 1 | 38492 | 38599 |
| YP_001110827.1 | NC_009232_p60 | hypothetical protein | phrog_10200 | unknown function | unknown function | 1 | 41566 | 41715 |
| YP_001110831.1 | NC_009232_p3 | portal protein | phrog_145 | portal protein | head and packaging | 1 | 1820 | 3289 |
| YP_008859658.1 | NC_009232_p61 | NinH-like protein | phrog_268 | unknown function | unknown function | 1 | 41712 | 41936 |
| YP_008859651.1 | NC_009232_p29 | hypothetical protein | phrog_329 | minor tail protein | tail | 1 | 19469 | 19834 |
| YP_001110817.1 | NC_009232_p48 | hypothetical protein | phrog_4090 | unknown function | unknown function | 1 | 38120 | 38386 |
| YP_008859650.1 | NC_009232_p8 | hypothetical protein | phrog_1267 | Rz-like spanin | lysis | 1 | 6201 | 6464 |
| YP_001110829.1 | NC_009232_p1 | terminase small subunit | phrog_3064 | terminase | head and packaging | 1 | 1 | 546 |
| YP_001110832.1 | NC_009232_p4 | hypothetical protein | phrog_6095 | amidase | lysis | -1 | 3319 | 3969 |
| YP_001110848.1 | NC_009232_p21 | hypothetical protein | phrog_2452 | unknown function | unknown function | -1 | 13512 | 13742 |
| YP_001110843.1 | NC_009232_p16 | hypothetical protein | phrog_161 | head closure Hc1 | connector | 1 | 10356 | 10715 |
| YP_001110840.1 | NC_009232_p13 | hypothetical protein | phrog_4451 | unknown function | unknown function | 1 | 9047 | 9235 |
| YP_001110801.1 | NC_009232_p28 | hypothetical protein | phrog_396 | minor tail protein | tail | 1 | 18957 | 19472 |
| YP_001110851.1 | NC_009232_p24 | hypothetical protein | phrog_313 | Tail assembly chaperone | tail | 1 | 15378 | 15794 |
| YP_001110838.1 | NC_009232_p11 | hypothetical protein | phrog_4366 | head fiber protein | head and packaging | 1 | 8319 | 8648 |
| YP_001110814.1 | NC_009232_p43 | hypothetical protein | phrog_3 | transcriptional repressor | transcription regulation | 1 | 34576 | 34794 |
| YP_001110834.1 | NC_009232_p6 | tail protein | phrog_3945 | Hoc-like head decoration | head and packaging | 1 | 5192 | 5650 |
| YP_001110803.2 | NC_009232_p31 | hypothetical protein | phrog_469 | tail protein | tail | 1 | 20639 | 22384 |
| YP_001110813.1 | NC_009232_p42 | hypothetical protein | phrog_3127 | unknown function | unknown function | -1 | 33906 | 34442 |
| YP_001110818.1 | NC_009232_p50 | hypothetical protein | phrog_9384 | unknown function | unknown function | 1 | 38794 | 38958 |
| YP_001110821.1 | NC_009232_p53 | hypothetical protein | phrog_2359 | holin | lysis | 1 | 39683 | 39964 |
| YP_001110815.1 | NC_009232_p44 | primase/helicase protein | phrog_3228 | replicative helicase-primase | DNA, RNA and nucleotide metabolism | -1 | 34809 | 36995 |
| YP_001110825.1 | NC_009232_p57 | hypothetical protein | phrog_3002 | unknown function | unknown function | 1 | 41080 | 41238 |
| YP_001110839.1 | NC_009232_p12 | major tail subunit | phrog_4069 | Hoc-like head decoration | head and packaging | 1 | 8660 | 9010 |
| YP_001110846.1 | NC_009232_p19 | tail protein | phrog_290 | minor tail protein | tail | 1 | 11526 | 12695 |
| YP_001110822.1 | NC_009232_p54 | class I holin | phrog_2508 | holin | lysis | 1 | 39966 | 40253 |
| YP_008859659.1 | NC_009232_p62 | hypothetical protein | phrog_2531 | unknown function | unknown function | 1 | 41936 | 42235 |
| YP_001110805.1 | NC_009232_p33 | hypothetical protein | phrog_5915 | unknown function | unknown function | -1 | 24570 | 24740 |
| YP_001110810.1 | NC_009232_p38 | DNA polymerase family A | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | -1 | 28400 | 31498 |
| YP_001110802.1 | NC_009232_p30 | tail fiber protein | phrog_31307 | tail protein | tail | 1 | 19825 | 20646 |
| YP_001110824.1 | NC_009232_p56 | hypothetical protein | phrog_2180 | unknown function | unknown function | 1 | 40907 | 41083 |
| YP_001110836.1 | NC_009232_p9 | scaffold protein | phrog_206 | head scaffolding protein | head and packaging | 1 | 6543 | 7250 |
| YP_001110811.1 | NC_009232_p39 | hypothetical protein | phrog_112 | Gp2.5-like ssDNA binding protein and ssDNA annealing protein | DNA, RNA and nucleotide metabolism | -1 | 31556 | 32182 |
| YP_008859657.1 | NC_009232_p58 | hypothetical protein | phrog_4684 | unknown function | unknown function | 1 | 41235 | 41390 |
| YP_001110828.1 | NC_009232_p63 | hypothetical protein | phrog_10134 | unknown function | unknown function | 1 | 42249 | 42479 |
| YP_001110844.1 | NC_009232_p17 | hypothetical protein | phrog_169 | tail completion or Neck1 protein | connector | 1 | 10712 | 11107 |
| YP_001110826.1 | NC_009232_p59 | NinZ-like protein | phrog_1402 | unknown function | unknown function | 1 | 41387 | 41569 |
| YP_001110841.1 | NC_009232_p14 | hypothetical protein | phrog_477 | head-tail adaptor Ad1 | connector | 1 | 9239 | 9748 |
| YP_001110812.1 | NC_009232_p41 | hypothetical protein | phrog_69 | exonuclease | DNA, RNA and nucleotide metabolism | -1 | 32437 | 33864 |
| YP_001110819.1 | NC_009232_p51 | hypothetical protein | phrog_3766 | unknown function | unknown function | 1 | 39021 | 39224 |