| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_009236 |
Definition |
Burkholderia phage phiE12-2 chromosome, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae; Peduovirinae; Tigrvirus. |
DB of origin |
REFSEQ |
Length |
36690 |
Host Name |
Burkholderia pseudomallei |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
50 |
%GC |
64.61 |
Number of singletons |
1 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_001111173.1 | NC_009236_p23 | gp23, hypothetical protein | phrog_11952 | unknown function | unknown function | -1 | 15672 | 16613 |
| YP_001111180.1 | NC_009236_p30 | gp30, phage tail protein, P2 GpE family | phrog_6416 | tail protein | tail | -1 | 23273 | 23386 |
| YP_001111199.1 | NC_009236_p49 | gp49, hypothetical protein | phrog_6732 | unknown function | unknown function | -1 | 35940 | 36191 |
| YP_001111165.1 | NC_009236_p15 | gp15, hypothetical replication protein | phrog_91 | nicking at origin of replication | DNA, RNA and nucleotide metabolism | -1 | 10955 | 12748 |
| YP_001111169.1 | NC_009236_p19 | gp19, hypothetical protein | phrog_35591 | unknown function | unknown function | -1 | 14770 | 14907 |
| YP_001111195.1 | NC_009236_p45 | gp45, bacteriophage-acquired protein | phrog_1224 | endolysin | head and packaging | -1 | 34295 | 35107 |
| YP_001111157.1 | NC_009236_p7 | gp7, addiction module killer protein | phrog_3445 | toxin | moron, auxiliary metabolic gene and host takeover | -1 | 5990 | 6511 |
| YP_001111198.1 | NC_009236_p48 | gp48, phage Tail Protein X | phrog_46 | baseplate hub | tail | -1 | 35737 | 35943 |
| YP_001111191.1 | NC_009236_p41 | gp41, hypothetical protein | phrog_8383 | unknown function | unknown function | -1 | 32216 | 32719 |
| YP_001111192.1 | NC_009236_p42 | gp42, conserved hypothetical protein | singleton | unknown function | unknown function | 1 | 32861 | 33529 |
| YP_001111184.1 | NC_009236_p34 | gp34, bacteriophage-acquired protein | phrog_105 | tail fiber assembly | tail | -1 | 25550 | 26221 |
| YP_001111167.1 | NC_009236_p17 | gp17, hypothetical protein | phrog_20319 | unknown function | unknown function | -1 | 12954 | 14195 |
| YP_001111190.1 | NC_009236_p40 | gp40, DNA methylase | phrog_67 | DNA methyltransferase | other | 1 | 31175 | 32050 |
| YP_001111163.1 | NC_009236_p13 | gp13, phage transcriptional activator, Ogr/Delta | phrog_13080 | unknown function | unknown function | -1 | 10470 | 10676 |
| YP_001111158.1 | NC_009236_p8 | gp8, bacteriophage protein | phrog_6456 | unknown function | unknown function | -1 | 6871 | 7992 |
| YP_001111154.1 | NC_009236_p4 | gp4, phage terminase, ATPase subunit | phrog_2 | terminase large subunit | head and packaging | 1 | 2730 | 4535 |
| YP_001111153.1 | NC_009236_p3 | gp3, phage capsid scaffolding protein (GPO) | phrog_73 | head scaffolding protein | head and packaging | -1 | 1813 | 2622 |
| YP_001111161.1 | NC_009236_p11 | gp11, conserved hypothetical protein | phrog_18157 | transcriptional repressor | transcription regulation | -1 | 9371 | 9652 |
| YP_001111197.1 | NC_009236_p47 | gp47, bacteriophage membrane protein | phrog_198 | holin | lysis | -1 | 35378 | 35722 |
| YP_001111151.1 | NC_009236_p1 | gp1, phage small terminase subunit | phrog_74 | terminase small subunit | head and packaging | -1 | 80 | 769 |
| YP_001111176.1 | NC_009236_p26 | gp26, conserved hypothetical protein | phrog_3518 | unknown function | unknown function | 1 | 18099 | 18662 |
| YP_001111193.1 | NC_009236_p43 | gp43, LysC | phrog_952 | Rz-like spanin | lysis | -1 | 33746 | 34021 |
| YP_001111152.1 | NC_009236_p2 | gp2, phage major capsid protein, P2 family | phrog_70 | major head protein | head and packaging | -1 | 766 | 1779 |
| YP_001111162.1 | NC_009236_p12 | gp12, partition protein | phrog_164 | ParA-like partition protein | DNA, RNA and nucleotide metabolism | -1 | 9727 | 10383 |
| YP_001111170.1 | NC_009236_p20 | gp20, hypothetical protein | phrog_11001 | unknown function | unknown function | -1 | 14916 | 15131 |
| YP_001111164.1 | NC_009236_p14 | gp14, hypothetical-acquired protein | phrog_603 | transcriptional regulator | transcription regulation | -1 | 10673 | 10930 |
| YP_001111194.1 | NC_009236_p44 | gp44, bacteriophage protein | phrog_89 | Rz-like spanin | lysis | -1 | 33858 | 34298 |
| YP_001111178.1 | NC_009236_p28 | gp28, fels-2 prophage protein | phrog_76 | tail protein | tail | -1 | 19867 | 20292 |
| YP_001111155.1 | NC_009236_p5 | gp5, phage portal protein, pbsx family | phrog_68 | portal protein | head and packaging | 1 | 4532 | 5587 |
| YP_001111181.1 | NC_009236_p31 | gp31, phage tail protein E | phrog_103 | tail protein | tail | -1 | 23395 | 23739 |
| YP_001111177.1 | NC_009236_p27 | gp27, bacteriophage late control gene D protein | phrog_52 | tail protein | tail | -1 | 18767 | 19867 |
| YP_001111174.1 | NC_009236_p24 | gp24, hypothetical protein | phrog_4441 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 16835 | 17173 |
| YP_001111166.1 | NC_009236_p16 | gp16, DNA methyltransferase | phrog_23296 | DNA methyltransferase | other | -1 | 12748 | 12954 |
| YP_001111172.1 | NC_009236_p22 | gp22, hypothetical protein | phrog_19335 | unknown function | unknown function | -1 | 15353 | 15538 |
| YP_001111171.1 | NC_009236_p21 | gp21, hypothetical protein | phrog_10656 | unknown function | unknown function | -1 | 15135 | 15356 |
| YP_001111196.1 | NC_009236_p46 | gp46, bacteriophage membrane protein | phrog_217 | holin | lysis | -1 | 35104 | 35376 |
| YP_001111185.1 | NC_009236_p35 | gp35, bacteriophage protein | phrog_4849 | tail protein | tail | -1 | 26238 | 28601 |
| YP_001111179.1 | NC_009236_p29 | gp29, bacteriophage membrane protein | phrog_28 | tail length tape measure protein | tail | -1 | 20310 | 23276 |
| YP_001111160.1 | NC_009236_p10 | hypothetical protein | phrog_5348 | unknown function | unknown function | -1 | 8735 | 9268 |
| YP_001111168.1 | NC_009236_p18 | gp18, hypothetical protein | phrog_21559 | unknown function | unknown function | -1 | 14397 | 14609 |
| YP_001111189.1 | NC_009236_p39 | gp39, phage baseplate assembly protein | phrog_11 | baseplate spike | tail | -1 | 30420 | 31172 |
| YP_001111200.1 | NC_009236_p50 | gp50, phage head completion protein (GPL) | phrog_71 | head-tail adaptor Ad1 | connector | -1 | 36191 | 36670 |
| YP_001111182.1 | NC_009236_p32 | gp32, phage major tail tube protein | phrog_55 | head closure | connector | -1 | 23797 | 24306 |
| YP_001111156.1 | NC_009236_p6 | gp6, addiction module antidote protein | phrog_4268 | transcriptional repressor | transcription regulation | -1 | 5631 | 5987 |
| YP_001111186.1 | NC_009236_p36 | gp36, phage tail protein I | phrog_48 | tail protein | tail | -1 | 28612 | 29166 |
| YP_001111175.1 | NC_009236_p25 | gp25, conserved hypothetical protein | phrog_10187 | unknown function | unknown function | 1 | 17311 | 17847 |
| YP_001111187.1 | NC_009236_p37 | gp37, bacteriophage baseplate assembly protein J | phrog_6 | baseplate wedge subunit | tail | -1 | 29159 | 30064 |
| YP_001111159.1 | NC_009236_p9 | gp9, bacteriophage protein | phrog_7616 | unknown function | unknown function | -1 | 8001 | 8738 |
| YP_001111188.1 | NC_009236_p38 | gp38, phage baseplate assembly protein | phrog_43 | baseplate wedge subunit | tail | -1 | 30061 | 30423 |
| YP_001111183.1 | NC_009236_p33 | gp33, phage tail sheath protein | phrog_23 | tail sheath | tail | -1 | 24322 | 25494 |