Genomic map of Ralstonia phage RSA1 (NC_009382)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_009382
Definition
Ralstonia phage phiRSA1, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae; Peduovirinae; Aresaunavirus.
DB of origin
REFSEQ
Length
38760
Host Name
Ralstonia solanacearum
Host domain
Bacteria
Is prophage?
undef
Number of proteins
51
%GC
65.34
Number of singletons
5
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_001165296.1 NC_009382_p47 DNA primase domain-containing protein phrog_5629 DNA primase DNA, RNA and nucleotide metabolism 1 31802 34606
YP_001165255.1 NC_009382_p6 terminase ATPase subunit phrog_2 terminase large subunit head and packaging -1 4005 5786
YP_001165259.1 NC_009382_p10 head completion/stabilization protein L phrog_71 head-tail adaptor Ad1 connector 1 8656 9135
YP_001165265.1 NC_009382_p16 tail completion protein-like protein phrog_65 tail terminator connector 1 11366 11800
YP_001165295.1 NC_009382_p46 pseudomonas resinovorans ORF80-like phrog_625 unknown function unknown function 1 31512 31802
YP_001165281.1 NC_009382_p32 tail protein phrog_52 tail protein tail 1 24168 25373
YP_001165262.1 NC_009382_p13 phage-related transmembrane protein phrog_217 holin lysis 1 9758 10072
YP_001165285.1 NC_009382_p36 hypothetical protein singleton unknown function unknown function 1 28062 28493
YP_001165258.1 NC_009382_p9 terminase endonuclease subunit phrog_74 terminase small subunit head and packaging 1 7837 8559
YP_001165276.1 NC_009382_p27 major tail sheath protein phrog_23 tail sheath tail 1 18868 20043
YP_001165283.1 NC_009382_p34 transposase IRSO15-like phrog_5749 transposase integration and excision -1 26214 27434
YP_001165275.1 NC_009382_p26 hypothetical protein phrog_1128 enoyl-CoA hydratase/carnithine racemase-like moron, auxiliary metabolic gene and host takeover 1 18310 18774
YP_001165266.1 NC_009382_p17 tail completion protein gpS phrog_26 tail completion or Neck1 protein connector 1 11797 12243
YP_001165294.1 NC_009382_p45 hypothetical protein singleton unknown function unknown function 1 30770 31246
YP_001165293.1 NC_009382_p44 hypothetical protein RSc1899-like phrog_6236 unknown function unknown function 1 30483 30695
YP_001165272.1 NC_009382_p23 tail fiber protein gpH phrog_327 tail protein tail 1 15884 17548
YP_001165257.1 NC_009382_p8 capsid protein phrog_70 major head protein head and packaging 1 6821 7840
YP_001165300.1 NC_009382_p51 hypothetical protein phrog_3364 unknown function unknown function 1 37124 38185
YP_001165267.1 NC_009382_p18 hypothetical protein singleton unknown function unknown function -1 12212 13153
YP_001165271.1 NC_009382_p22 phage tail protein gpI phrog_48 tail protein tail 1 15262 15879
YP_001165261.1 NC_009382_p12 phage-related transmembrane protein phrog_198 holin lysis 1 9357 9761
YP_001165279.1 NC_009382_p30 bacteriophage tail protein gpT phrog_28 tail length tape measure protein tail 1 21081 23660
YP_001165286.1 NC_009382_p37 hypothetical protein phrog_9850 unknown function unknown function 1 28539 28733
YP_001165274.1 NC_009382_p25 tail fiber assembly-like protein phrog_1807 tail fiber protein tail 1 17561 18313
YP_001165291.1 NC_009382_p42 transmembrane protein phrog_24813 unknown function unknown function 1 30048 30254
YP_001165252.1 NC_009382_p3 hypothetical protein phrog_17530 unknown function unknown function 1 1260 2192
YP_001165256.1 NC_009382_p7 capsid-scaffolding protein phrog_73 head scaffolding protein head and packaging 1 5922 6767
YP_001165280.1 NC_009382_p31 bacteriophage gpU phrog_76 tail protein tail 1 23749 24171
YP_001165297.1 NC_009382_p48 hypothetical protein singleton unknown function unknown function -1 31808 33589
YP_001165251.1 NC_009382_p2 hypothetical protein phrog_24412 unknown function unknown function 1 747 1250
YP_001165250.1 NC_009382_p1 bacteriophageprotein phrog_281 PAAR motif of membran proteins moron, auxiliary metabolic gene and host takeover 1 353 745
YP_001165290.1 NC_009382_p41 hypothetical protein RSc1902-like phrog_27455 unknown function unknown function 1 29887 30051
YP_001165264.1 NC_009382_p15 signal peptide protein phrog_4952 signal peptide motif other 1 10872 11369
YP_001165289.1 NC_009382_p40 hypothetical protein RSc1903-like phrog_24608 unknown function unknown function 1 29657 29890
YP_001165278.1 NC_009382_p29 bacteriophage gpE phrog_103 tail protein tail 1 20630 20986
YP_001165270.1 NC_009382_p21 baseplate assembly protein phrog_6 baseplate wedge subunit tail 1 14361 15269
YP_001165263.1 NC_009382_p14 hypothetical protein phrog_1224 endolysin head and packaging 1 10069 10875
YP_001165269.1 NC_009382_p20 baseplate wedge subunit phrog_43 baseplate wedge subunit tail 1 14011 14358
YP_001165299.1 NC_009382_p50 site-specific recombinase phrog_1 integrase integration and excision 1 35709 36791
YP_001165273.1 NC_009382_p24 phage tail collar protein phrog_523 tail collar fiber protein tail 1 16871 17548
YP_001165284.1 NC_009382_p35 phage DNA-binding protein phrog_8 transcriptional regulator transcription regulation -1 27606 28022
YP_001165287.1 NC_009382_p38 phage transcription activator Org/Delta phrog_603 transcriptional regulator transcription regulation 1 28730 28978
YP_001165288.1 NC_009382_p39 hypothetical protein phrog_5060 anti-repressor Ant transcription regulation 1 29093 29647
YP_001165268.1 NC_009382_p19 baseplate assembly protein V phrog_11 baseplate spike tail 1 13397 14014
YP_001165253.1 NC_009382_p4 hypothetical protein phrog_14863 unknown function unknown function 1 2102 2917
YP_001165298.1 NC_009382_p49 hypothetical protein singleton unknown function unknown function 1 34778 35497
YP_001165254.1 NC_009382_p5 portal vertex protein phrog_68 portal protein head and packaging -1 2902 4008
YP_001165277.1 NC_009382_p28 major tail tube protein phrog_55 head closure connector 1 20075 20584
YP_001165292.1 NC_009382_p43 transmembrane protein phrog_22312 membrane protein moron, auxiliary metabolic gene and host takeover 1 30254 30490
YP_001165282.1 NC_009382_p33 hypothetical protein phrog_6521 membrane protein moron, auxiliary metabolic gene and host takeover -1 25389 26135
YP_001165260.1 NC_009382_p11 phage tail X phrog_46 baseplate hub tail 1 9135 9341