functional categories (each PHROG annotation is associated to a category) | Notes | ||
head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
tail | lysis | other | - Scroll to zoom |
unknown function | - Click on a protein to see its PHROG |
Locus |
NC_009382 |
Definition |
Ralstonia phage phiRSA1, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae; Peduovirinae; Aresaunavirus. |
DB of origin |
REFSEQ |
Length |
38760 |
Host Name |
Ralstonia solanacearum |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
51 |
%GC |
65.34 |
Number of singletons |
5 |
Number of paralogs |
0 |
NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
---|---|---|---|---|---|---|---|---|
YP_001165296.1 | NC_009382_p47 | DNA primase domain-containing protein | phrog_5629 | DNA primase | DNA, RNA and nucleotide metabolism | 1 | 31802 | 34606 |
YP_001165255.1 | NC_009382_p6 | terminase ATPase subunit | phrog_2 | terminase large subunit | head and packaging | -1 | 4005 | 5786 |
YP_001165259.1 | NC_009382_p10 | head completion/stabilization protein L | phrog_71 | head-tail adaptor Ad1 | connector | 1 | 8656 | 9135 |
YP_001165265.1 | NC_009382_p16 | tail completion protein-like protein | phrog_65 | tail terminator | connector | 1 | 11366 | 11800 |
YP_001165295.1 | NC_009382_p46 | pseudomonas resinovorans ORF80-like | phrog_625 | unknown function | unknown function | 1 | 31512 | 31802 |
YP_001165281.1 | NC_009382_p32 | tail protein | phrog_52 | tail protein | tail | 1 | 24168 | 25373 |
YP_001165262.1 | NC_009382_p13 | phage-related transmembrane protein | phrog_217 | holin | lysis | 1 | 9758 | 10072 |
YP_001165285.1 | NC_009382_p36 | hypothetical protein | singleton | unknown function | unknown function | 1 | 28062 | 28493 |
YP_001165258.1 | NC_009382_p9 | terminase endonuclease subunit | phrog_74 | terminase small subunit | head and packaging | 1 | 7837 | 8559 |
YP_001165276.1 | NC_009382_p27 | major tail sheath protein | phrog_23 | tail sheath | tail | 1 | 18868 | 20043 |
YP_001165283.1 | NC_009382_p34 | transposase IRSO15-like | phrog_5749 | transposase | integration and excision | -1 | 26214 | 27434 |
YP_001165275.1 | NC_009382_p26 | hypothetical protein | phrog_1128 | enoyl-CoA hydratase/carnithine racemase-like | moron, auxiliary metabolic gene and host takeover | 1 | 18310 | 18774 |
YP_001165266.1 | NC_009382_p17 | tail completion protein gpS | phrog_26 | tail completion or Neck1 protein | connector | 1 | 11797 | 12243 |
YP_001165294.1 | NC_009382_p45 | hypothetical protein | singleton | unknown function | unknown function | 1 | 30770 | 31246 |
YP_001165293.1 | NC_009382_p44 | hypothetical protein RSc1899-like | phrog_6236 | unknown function | unknown function | 1 | 30483 | 30695 |
YP_001165272.1 | NC_009382_p23 | tail fiber protein gpH | phrog_327 | tail protein | tail | 1 | 15884 | 17548 |
YP_001165257.1 | NC_009382_p8 | capsid protein | phrog_70 | major head protein | head and packaging | 1 | 6821 | 7840 |
YP_001165300.1 | NC_009382_p51 | hypothetical protein | phrog_3364 | unknown function | unknown function | 1 | 37124 | 38185 |
YP_001165267.1 | NC_009382_p18 | hypothetical protein | singleton | unknown function | unknown function | -1 | 12212 | 13153 |
YP_001165271.1 | NC_009382_p22 | phage tail protein gpI | phrog_48 | tail protein | tail | 1 | 15262 | 15879 |
YP_001165261.1 | NC_009382_p12 | phage-related transmembrane protein | phrog_198 | holin | lysis | 1 | 9357 | 9761 |
YP_001165279.1 | NC_009382_p30 | bacteriophage tail protein gpT | phrog_28 | tail length tape measure protein | tail | 1 | 21081 | 23660 |
YP_001165286.1 | NC_009382_p37 | hypothetical protein | phrog_9850 | unknown function | unknown function | 1 | 28539 | 28733 |
YP_001165274.1 | NC_009382_p25 | tail fiber assembly-like protein | phrog_1807 | tail fiber protein | tail | 1 | 17561 | 18313 |
YP_001165291.1 | NC_009382_p42 | transmembrane protein | phrog_24813 | unknown function | unknown function | 1 | 30048 | 30254 |
YP_001165252.1 | NC_009382_p3 | hypothetical protein | phrog_17530 | unknown function | unknown function | 1 | 1260 | 2192 |
YP_001165256.1 | NC_009382_p7 | capsid-scaffolding protein | phrog_73 | head scaffolding protein | head and packaging | 1 | 5922 | 6767 |
YP_001165280.1 | NC_009382_p31 | bacteriophage gpU | phrog_76 | tail protein | tail | 1 | 23749 | 24171 |
YP_001165297.1 | NC_009382_p48 | hypothetical protein | singleton | unknown function | unknown function | -1 | 31808 | 33589 |
YP_001165251.1 | NC_009382_p2 | hypothetical protein | phrog_24412 | unknown function | unknown function | 1 | 747 | 1250 |
YP_001165250.1 | NC_009382_p1 | bacteriophageprotein | phrog_281 | PAAR motif of membran proteins | moron, auxiliary metabolic gene and host takeover | 1 | 353 | 745 |
YP_001165290.1 | NC_009382_p41 | hypothetical protein RSc1902-like | phrog_27455 | unknown function | unknown function | 1 | 29887 | 30051 |
YP_001165264.1 | NC_009382_p15 | signal peptide protein | phrog_4952 | signal peptide motif | other | 1 | 10872 | 11369 |
YP_001165289.1 | NC_009382_p40 | hypothetical protein RSc1903-like | phrog_24608 | unknown function | unknown function | 1 | 29657 | 29890 |
YP_001165278.1 | NC_009382_p29 | bacteriophage gpE | phrog_103 | tail protein | tail | 1 | 20630 | 20986 |
YP_001165270.1 | NC_009382_p21 | baseplate assembly protein | phrog_6 | baseplate wedge subunit | tail | 1 | 14361 | 15269 |
YP_001165263.1 | NC_009382_p14 | hypothetical protein | phrog_1224 | endolysin | head and packaging | 1 | 10069 | 10875 |
YP_001165269.1 | NC_009382_p20 | baseplate wedge subunit | phrog_43 | baseplate wedge subunit | tail | 1 | 14011 | 14358 |
YP_001165299.1 | NC_009382_p50 | site-specific recombinase | phrog_1 | integrase | integration and excision | 1 | 35709 | 36791 |
YP_001165273.1 | NC_009382_p24 | phage tail collar protein | phrog_523 | tail collar fiber protein | tail | 1 | 16871 | 17548 |
YP_001165284.1 | NC_009382_p35 | phage DNA-binding protein | phrog_8 | transcriptional regulator | transcription regulation | -1 | 27606 | 28022 |
YP_001165287.1 | NC_009382_p38 | phage transcription activator Org/Delta | phrog_603 | transcriptional regulator | transcription regulation | 1 | 28730 | 28978 |
YP_001165288.1 | NC_009382_p39 | hypothetical protein | phrog_5060 | anti-repressor Ant | transcription regulation | 1 | 29093 | 29647 |
YP_001165268.1 | NC_009382_p19 | baseplate assembly protein V | phrog_11 | baseplate spike | tail | 1 | 13397 | 14014 |
YP_001165253.1 | NC_009382_p4 | hypothetical protein | phrog_14863 | unknown function | unknown function | 1 | 2102 | 2917 |
YP_001165298.1 | NC_009382_p49 | hypothetical protein | singleton | unknown function | unknown function | 1 | 34778 | 35497 |
YP_001165254.1 | NC_009382_p5 | portal vertex protein | phrog_68 | portal protein | head and packaging | -1 | 2902 | 4008 |
YP_001165277.1 | NC_009382_p28 | major tail tube protein | phrog_55 | head closure | connector | 1 | 20075 | 20584 |
YP_001165292.1 | NC_009382_p43 | transmembrane protein | phrog_22312 | membrane protein | moron, auxiliary metabolic gene and host takeover | 1 | 30254 | 30490 |
YP_001165282.1 | NC_009382_p33 | hypothetical protein | phrog_6521 | membrane protein | moron, auxiliary metabolic gene and host takeover | -1 | 25389 | 26135 |
YP_001165260.1 | NC_009382_p11 | phage tail X | phrog_46 | baseplate hub | tail | 1 | 9135 | 9341 |