| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_009447 |
Definition |
Burkholderia phage BcepGomr, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae. |
DB of origin |
REFSEQ |
Length |
52414 |
Host Name |
Burkholderia cepacia |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
75 |
%GC |
56.29 |
Number of singletons |
35 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_001210274.1 | NC_009447_p54 | hypothetical protein | singleton | unknown function | unknown function | -1 | 41743 | 41955 |
| YP_001210257.1 | NC_009447_p37 | COG0602 | phrog_2076 | QueE-like radical SAM domain | moron, auxiliary metabolic gene and host takeover | -1 | 31478 | 32260 |
| YP_001210282.1 | NC_009447_p62 | COG4983 | phrog_6012 | DNA helicase | DNA, RNA and nucleotide metabolism | 1 | 44883 | 47261 |
| YP_001210295.1 | NC_009447_p75 | Rz1 | phrog_1275 | Rz-like spanin | lysis | 1 | 52125 | 52397 |
| YP_001210287.1 | NC_009447_p67 | hypothetical protein | singleton | unknown function | unknown function | 1 | 49395 | 49556 |
| YP_001210231.1 | NC_009447_p11 | phi JL001 hypothetical protein gp77 | phrog_179 | tail terminator | connector | 1 | 7836 | 8288 |
| YP_001210290.1 | NC_009447_p70 | hypothetical protein | singleton | unknown function | unknown function | -1 | 50219 | 50611 |
| YP_001210293.1 | NC_009447_p73 | Holin | phrog_1356 | holin | lysis | 1 | 51619 | 51969 |
| YP_001210271.1 | NC_009447_p51 | hypothetical protein | singleton | unknown function | unknown function | -1 | 40655 | 40915 |
| YP_001210222.1 | NC_009447_p2 | hypothetical protein | singleton | unknown function | unknown function | 1 | 790 | 957 |
| YP_001210232.1 | NC_009447_p12 | phi JL001 hypothetical protein gp78 | phrog_290 | minor tail protein | tail | 1 | 8292 | 9587 |
| YP_001210291.1 | NC_009447_p71 | protein p5 | phrog_873 | endolysin | head and packaging | 1 | 50837 | 51328 |
| YP_001210284.1 | NC_009447_p64 | similar to Enterobacteria phage P1 pmgM | phrog_824 | unknown function | unknown function | 1 | 47916 | 48383 |
| YP_001210281.1 | NC_009447_p61 | hypothetical protein | singleton | unknown function | unknown function | 1 | 44707 | 44883 |
| YP_001210234.1 | NC_009447_p14 | hypothetical protein | phrog_3817 | tail chaperonin | tail | 1 | 10119 | 10436 |
| YP_001210228.1 | NC_009447_p8 | hypothetical protein | singleton | unknown function | unknown function | 1 | 6399 | 6929 |
| YP_001210292.1 | NC_009447_p72 | Holin | singleton | unknown function | unknown function | 1 | 51341 | 51622 |
| YP_001210230.1 | NC_009447_p10 | hypothetical protein | phrog_161 | head closure Hc1 | connector | 1 | 7471 | 7839 |
| YP_001210265.1 | NC_009447_p45 | hypothetical protein | phrog_124 | Sak4-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | -1 | 38331 | 38993 |
| YP_001210240.1 | NC_009447_p20 | similar to phage D3 orf 22 | phrog_396 | minor tail protein | tail | 1 | 17434 | 17967 |
| YP_001210270.1 | NC_009447_p50 | hypothetical protein | singleton | unknown function | unknown function | -1 | 40391 | 40633 |
| YP_001210268.1 | NC_009447_p48 | hypothetical protein | phrog_2480 | unknown function | unknown function | -1 | 39573 | 40109 |
| YP_001210279.1 | NC_009447_p59 | hypothetical protein | singleton | unknown function | unknown function | -1 | 43945 | 44151 |
| YP_001210277.1 | NC_009447_p57 | hypothetical protein | singleton | unknown function | unknown function | -1 | 42784 | 43080 |
| YP_001210226.1 | NC_009447_p6 | similar to minor capsid protein | phrog_206 | head scaffolding protein | head and packaging | 1 | 4479 | 5192 |
| YP_001210225.1 | NC_009447_p5 | similar to 62 kD structural protein of Bacteriophage MB78 | phrog_145 | portal protein | head and packaging | 1 | 2695 | 4302 |
| YP_001210223.1 | NC_009447_p3 | hypothetical protein | phrog_2864 | unknown function | unknown function | 1 | 957 | 1160 |
| YP_001210249.1 | NC_009447_p29 | hypothetical protein | singleton | unknown function | unknown function | -1 | 27249 | 27401 |
| YP_001210224.1 | NC_009447_p4 | TerL | phrog_2 | terminase large subunit | head and packaging | 1 | 1160 | 2692 |
| YP_001210269.1 | NC_009447_p49 | hypothetical protein | singleton | unknown function | unknown function | -1 | 40201 | 40389 |
| YP_001210233.1 | NC_009447_p13 | hypothetical protein | phrog_313 | Tail assembly chaperone | tail | 1 | 9664 | 10101 |
| YP_001210237.1 | NC_009447_p17 | hypothetical protein | phrog_384 | virion structural protein | head and packaging | 1 | 13816 | 14934 |
| YP_001210267.1 | NC_009447_p47 | hypothetical protein | singleton | unknown function | unknown function | -1 | 39343 | 39573 |
| YP_001210260.1 | NC_009447_p40 | hypothetical protein | phrog_7864 | unknown function | unknown function | -1 | 33664 | 34359 |
| YP_001210285.1 | NC_009447_p65 | hypothetical protein | singleton | unknown function | unknown function | -1 | 48429 | 49043 |
| YP_001210244.1 | NC_009447_p24 | hypothetical protein | singleton | unknown function | unknown function | 1 | 22349 | 23011 |
| YP_001210280.1 | NC_009447_p60 | hypothetical protein | singleton | unknown function | unknown function | -1 | 44224 | 44532 |
| YP_001210235.1 | NC_009447_p15 | phi JL001 hypothetical protein gp81 | phrog_169 | tail completion or Neck1 protein | connector | 1 | 10433 | 10837 |
| YP_001210248.1 | NC_009447_p28 | hypothetical protein | phrog_947 | DNA polymerase processivity factor | DNA, RNA and nucleotide metabolism | -1 | 26273 | 27256 |
| YP_001210275.1 | NC_009447_p55 | hypothetical protein | singleton | unknown function | unknown function | -1 | 41952 | 42326 |
| YP_001210288.1 | NC_009447_p68 | hypothetical protein | singleton | unknown function | unknown function | 1 | 49553 | 49675 |
| YP_001210245.1 | NC_009447_p25 | hypothetical protein | phrog_229 | MazG-like pyrophosphatase | other | -1 | 23056 | 23631 |
| YP_001210252.1 | NC_009447_p32 | hypothetical protein | singleton | unknown function | unknown function | -1 | 28929 | 29204 |
| YP_001210283.1 | NC_009447_p63 | hypothetical protein | singleton | unknown function | unknown function | 1 | 47448 | 47714 |
| YP_001210247.1 | NC_009447_p27 | hypothetical protein | singleton | unknown function | unknown function | -1 | 25773 | 26147 |
| YP_001210255.1 | NC_009447_p35 | ExsB | phrog_1550 | QueC-like queuosine biosynthesis | moron, auxiliary metabolic gene and host takeover | -1 | 30398 | 31303 |
| YP_001210236.1 | NC_009447_p16 | tape measure protein | singleton | unknown function | unknown function | 1 | 10834 | 13812 |
| YP_001210276.1 | NC_009447_p56 | hypothetical protein | singleton | unknown function | unknown function | -1 | 42323 | 42787 |
| YP_001210242.1 | NC_009447_p22 | similar to phiE125 gp21 | phrog_31 | central tail fiber J | tail | 1 | 18355 | 22065 |
| YP_001210266.1 | NC_009447_p46 | hypothetical protein | singleton | unknown function | unknown function | -1 | 39011 | 39346 |
| YP_001210262.1 | NC_009447_p42 | COG1061 | phrog_16 | DNA helicase | DNA, RNA and nucleotide metabolism | -1 | 34609 | 36411 |
| YP_001210258.1 | NC_009447_p38 | hypothetical protein | phrog_18634 | unknown function | unknown function | -1 | 32682 | 33317 |
| YP_001210238.1 | NC_009447_p18 | hypothetical protein | phrog_5417 | unknown function | unknown function | 1 | 14943 | 15374 |
| YP_001210239.1 | NC_009447_p19 | hypothetical protein | singleton | unknown function | unknown function | 1 | 15378 | 17387 |
| YP_001210264.1 | NC_009447_p44 | hypothetical protein | singleton | unknown function | unknown function | -1 | 37422 | 38270 |
| YP_001210221.1 | NC_009447_p1 | hypothetical protein | phrog_5334 | terminase small subunit | head and packaging | 1 | 74 | 793 |
| YP_001210229.1 | NC_009447_p9 | hypothetical protein | phrog_477 | head-tail adaptor Ad1 | connector | 1 | 6956 | 7474 |
| YP_001210294.1 | NC_009447_p74 | Rz inner membrane protein | singleton | unknown function | unknown function | 1 | 51875 | 52264 |
| YP_001210261.1 | NC_009447_p41 | hypothetical protein | singleton | unknown function | unknown function | -1 | 34374 | 34631 |
| YP_001210243.1 | NC_009447_p23 | hypothetical protein | phrog_2427 | unknown function | unknown function | 1 | 22065 | 22349 |
| YP_001210241.1 | NC_009447_p21 | tail protein with COG0791: cell wall hydrolase | phrog_329 | minor tail protein | tail | 1 | 17964 | 18404 |
| YP_001210250.1 | NC_009447_p30 | hypothetical protein | singleton | unknown function | unknown function | -1 | 27401 | 28015 |
| YP_001210256.1 | NC_009447_p36 | hypothetical protein | singleton | unknown function | unknown function | -1 | 31305 | 31475 |
| YP_001210246.1 | NC_009447_p26 | COG0417 | phrog_1252 | DNA polymerase | DNA, RNA and nucleotide metabolism | -1 | 23646 | 25700 |
| YP_001210251.1 | NC_009447_p31 | similar to Mycobacteriophage Rosebush gp2 | phrog_887 | queuine tRNA-ribosyltransferase | moron, auxiliary metabolic gene and host takeover | -1 | 28012 | 28932 |
| YP_001210254.1 | NC_009447_p34 | COG0720 | phrog_2389 | QueD-like 6-pyruvoyl-tetrahydropterin synthase | moron, auxiliary metabolic gene and host takeover | -1 | 29937 | 30398 |
| YP_001210278.1 | NC_009447_p58 | similar to Bacteriophage B3 B3ORF5 | phrog_421 | unknown function | unknown function | -1 | 43142 | 43846 |
| YP_001210253.1 | NC_009447_p33 | COG0302 | phrog_2197 | GTP cyclohydrolase | other | -1 | 29216 | 29935 |
| YP_001210227.1 | NC_009447_p7 | similar to JL001p67 major capsid protein | phrog_247 | major head protein | head and packaging | 1 | 5222 | 6325 |
| YP_001210289.1 | NC_009447_p69 | hypothetical protein | singleton | unknown function | unknown function | 1 | 49808 | 50020 |
| YP_001210273.1 | NC_009447_p53 | hypothetical protein | singleton | unknown function | unknown function | -1 | 41609 | 41746 |
| YP_001210272.1 | NC_009447_p52 | similar to Mycobacteriophage Rosebush gp45 | phrog_636 | unknown function | unknown function | -1 | 40857 | 41489 |
| YP_001210286.1 | NC_009447_p66 | hypothetical protein | singleton | unknown function | unknown function | 1 | 49241 | 49387 |
| YP_001210259.1 | NC_009447_p39 | hypothetical protein | singleton | unknown function | unknown function | -1 | 33467 | 33667 |
| YP_001210263.1 | NC_009447_p43 | hypothetical protein | phrog_1990 | Cas4-domain exonuclease | DNA, RNA and nucleotide metabolism | -1 | 36415 | 37359 |