Genomic map of Staphylococcus virus 80alpha (NC_009526)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_009526
Definition
Staphylococcus phage 80alpha, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Phietavirus.
DB of origin
REFSEQ
Length
43864
Host Name
Staphylococcus aureus
Host domain
Bacteria
Is prophage?
undef
Number of proteins
73
%GC
34.1
Number of singletons
2
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_001285326.1 NC_009526_p12 hypothetical protein phrog_3785 unknown function unknown function 1 5814 5942
YP_001285331.1 NC_009526_p17 ssb phrog_44 single strand DNA binding protein DNA, RNA and nucleotide metabolism 1 7295 7723
YP_001285335.1 NC_009526_p21 DnaC phrog_50 DnaC-like helicase loader DNA, RNA and nucleotide metabolism 1 10219 10998
YP_001285344.1 NC_009526_p30 53 ORF 49-like protein phrog_1034 unknown function unknown function 1 13352 13660
YP_001285316.1 NC_009526_p2 xis phrog_16497 excisionase integration and excision 1 1525 1725
YP_001285352.1 NC_009526_p38 rinMiddle phrog_1367 unknown function unknown function 1 15628 15774
YP_001285320.1 NC_009526_p6 CI-like repressor phrog_4 transcriptional repressor transcription regulation -1 3185 3901
YP_001285376.1 NC_009526_p62 hypothetical protein phrog_257 minor tail protein tail 1 33987 35810
YP_001285354.1 NC_009526_p40 terminase small subunit phrog_51 terminase small subunit head and packaging 1 16407 16847
YP_001285363.1 NC_009526_p49 hypothetical protein phrog_132 head-tail adaptor connector 1 22937 23269
YP_001285369.1 NC_009526_p55 hypothetical protein phrog_441 tail assembly chaperone tail 1 25367 25711
YP_001285350.1 NC_009526_p36 hypothetical protein phrog_301 secreted protein other 1 15071 15457
YP_001285346.1 NC_009526_p32 dUTPase phrog_135 dUTPase DNA, RNA and nucleotide metabolism 1 13894 14406
YP_001285327.1 NC_009526_p13 hypothetical protein phrog_369 unknown function unknown function 1 5935 6096
YP_001285380.1 NC_009526_p66 hypothetical protein phrog_276 unknown function unknown function 1 36411 36710
YP_001285338.1 NC_009526_p24 RusA phrog_140 RusA-like Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 11394 11801
YP_001285370.1 NC_009526_p56 tape measure protein phrog_58 tail length tape measure protein tail 1 25728 29192
YP_001285386.1 NC_009526_p72 hypothetical protein singleton unknown function unknown function -1 42409 42636
YP_001285359.1 NC_009526_p45 hypothetical protein phrog_1431 unknown function unknown function 1 20732 20902
YP_001285330.1 NC_009526_p16 e12 phrog_659 Sak-like ssDNA annealing protein DNA, RNA and nucleotide metabolism 1 6672 7295
YP_001285382.1 NC_009526_p68 tail fiber protein phrog_1125 tail fiber protein tail 1 38758 39930
YP_001285319.1 NC_009526_p5 hypothetical protein phrog_1176 unknown function unknown function -1 2948 3115
YP_001285341.1 NC_009526_p27 hypothetical protein phrog_258 virulence associated other 1 12347 12595
YP_001285384.1 NC_009526_p70 holin phrog_263 holin lysis 1 40387 40689
YP_001285340.1 NC_009526_p26 hypothetical protein phrog_201 Panton-Valentine leukocicin DNA, RNA and nucleotide metabolism 1 11987 12346
YP_001285377.1 NC_009526_p63 hypothetical protein phrog_23714 unknown function unknown function 1 35284 35505
YP_001285318.1 NC_009526_p4 hypothetical protein phrog_5192 unknown function unknown function -1 2603 2788
YP_001285349.1 NC_009526_p35 hypothetical protein phrog_555 unknown function unknown function 1 14842 15078
YP_001285325.1 NC_009526_p11 hypothetical protein phrog_2222 unknown function unknown function -1 5525 5755
YP_001285339.1 NC_009526_p25 hypothetical protein phrog_299 unknown function unknown function 1 11801 11986
YP_001285315.1 NC_009526_p1 int phrog_95 integrase integration and excision -1 32 1417
YP_001285366.1 NC_009526_p52 hypothetical protein phrog_176 tail terminator connector 1 23927 24310
YP_001285333.1 NC_009526_p19 hypothetical protein phrog_2232 unknown function unknown function -1 8517 9374
YP_001285332.1 NC_009526_p18 hypothetical protein phrog_398 unknown function unknown function 1 7737 8411
YP_001285343.1 NC_009526_p29 hypothetical protein phrog_98 unknown function unknown function 1 13008 13355
YP_001285368.1 NC_009526_p54 hypothetical protein phrog_183 tail chaperone protein tail 1 24972 25337
YP_001285364.1 NC_009526_p50 hypothetical protein phrog_348 minor head protein head and packaging 1 23266 23568
YP_001285355.1 NC_009526_p41 terminase large subunit phrog_2 terminase large subunit head and packaging 1 16768 18111
YP_001285328.1 NC_009526_p14 hypothetical protein phrog_401 unknown function unknown function 1 6188 6448
YP_001285357.1 NC_009526_p43 hypothetical protein phrog_37440 unknown function unknown function 1 19545 19730
YP_001285323.1 NC_009526_p9 hypothetical protein phrog_845 unknown function unknown function 1 5127 5321
YP_001285375.1 NC_009526_p61 minor structure protein phrog_287 minor tail protein tail 1 32077 33987
YP_001285385.1 NC_009526_p71 lyt2 phrog_489 endolysin lysis 1 40701 42155
YP_001285361.1 NC_009526_p47 major head protein phrog_10 major head protein head and packaging 1 21645 22619
YP_001285351.1 NC_009526_p37 rinB phrog_152 RinB-like transcriptional activator transcription regulation 1 15454 15627
YP_001285317.1 NC_009526_p3 hypothetical protein phrog_13276 unknown function unknown function -1 1662 2567
YP_001285372.1 NC_009526_p58 hypothetical protein phrog_33 distal tail protein Dit tail 1 29205 30152
YP_001285353.1 NC_009526_p39 rinA phrog_36 transcriptional regulator transcription regulation 1 15798 16220
YP_001285322.1 NC_009526_p8 antirepressor phrog_130 anti-repressor Ant transcription regulation 1 4323 5111
YP_001285362.1 NC_009526_p48 hypothetical protein phrog_390 Arc-like repressor transcription regulation 1 22641 22928
YP_001285379.1 NC_009526_p65 hypothetical protein phrog_134 unknown function unknown function 1 36188 36370
YP_001285348.1 NC_009526_p34 hypothetical protein phrog_1122 unknown function unknown function 1 14646 14849
YP_001285342.1 NC_009526_p28 hypothetical protein phrog_467 unknown function unknown function 1 12610 13011
YP_001285336.1 NC_009526_p22 hypothetical protein phrog_809 transcriptional regulator transcription regulation 1 10992 11150
YP_001285345.1 NC_009526_p31 hypothetical protein phrog_266 unknown function unknown function 1 13653 13889
YP_001285365.1 NC_009526_p51 hypothetical protein phrog_5 tail completion or Neck1 protein connector 1 23568 23915
YP_001285347.1 NC_009526_p33 hypothetical protein phrog_278 transcriptional regulator transcription regulation 1 14443 14649
YP_001285367.1 NC_009526_p53 major tail protein phrog_238 major tail protein tail 1 24329 24910
YP_001285374.1 NC_009526_p60 hypothetical protein phrog_19277 unknown function unknown function 1 31875 32084
YP_001285371.1 NC_009526_p57 inside tape protein singleton unknown function unknown function 1 27980 28372
YP_001285387.1 NC_009526_p73 hypothetical protein phrog_9659 unknown function unknown function 1 42770 43606
YP_001285378.1 NC_009526_p64 hypothetical protein phrog_300 tail fiber protein tail 1 35810 36187
YP_001285383.1 NC_009526_p69 hypothetical protein phrog_1262 unknown function unknown function 1 39936 40331
YP_001285381.1 NC_009526_p67 lyz phrog_759 tail associated cell-wall hydrolase other 1 36847 38745
YP_001285356.1 NC_009526_p42 portal protein phrog_64 portal protein head and packaging 1 18122 19657
YP_001285373.1 NC_009526_p59 hypothetical protein phrog_663 minor head protein head and packaging 1 30161 32062
YP_001285329.1 NC_009526_p15 hypothetical protein phrog_946 unknown function unknown function 1 6458 6679
YP_001285321.1 NC_009526_p7 cro-like repressor phrog_3 transcriptional repressor transcription regulation 1 4065 4307
YP_001285337.1 NC_009526_p23 hypothetical protein phrog_433 unknown function unknown function 1 11163 11384
YP_001285360.1 NC_009526_p46 scaffold protein phrog_172 head scaffolding protein head and packaging 1 21011 21631
YP_001285324.1 NC_009526_p10 hypothetical protein phrog_2312 unknown function unknown function 1 5374 5550
YP_001285334.1 NC_009526_p20 hypothetical protein phrog_428 replication initiation protein DNA, RNA and nucleotide metabolism 1 9439 10209
YP_001285358.1 NC_009526_p44 minor head protein phrog_115 minor head protein head and packaging 1 19664 20659