| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_009526 |
Definition |
Staphylococcus phage 80alpha, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Phietavirus. |
DB of origin |
REFSEQ |
Length |
43864 |
Host Name |
Staphylococcus aureus |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
73 |
%GC |
34.1 |
Number of singletons |
2 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_001285326.1 | NC_009526_p12 | hypothetical protein | phrog_3785 | unknown function | unknown function | 1 | 5814 | 5942 |
| YP_001285331.1 | NC_009526_p17 | ssb | phrog_44 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 7295 | 7723 |
| YP_001285335.1 | NC_009526_p21 | DnaC | phrog_50 | DnaC-like helicase loader | DNA, RNA and nucleotide metabolism | 1 | 10219 | 10998 |
| YP_001285344.1 | NC_009526_p30 | 53 ORF 49-like protein | phrog_1034 | unknown function | unknown function | 1 | 13352 | 13660 |
| YP_001285316.1 | NC_009526_p2 | xis | phrog_16497 | excisionase | integration and excision | 1 | 1525 | 1725 |
| YP_001285352.1 | NC_009526_p38 | rinMiddle | phrog_1367 | unknown function | unknown function | 1 | 15628 | 15774 |
| YP_001285320.1 | NC_009526_p6 | CI-like repressor | phrog_4 | transcriptional repressor | transcription regulation | -1 | 3185 | 3901 |
| YP_001285376.1 | NC_009526_p62 | hypothetical protein | phrog_257 | minor tail protein | tail | 1 | 33987 | 35810 |
| YP_001285354.1 | NC_009526_p40 | terminase small subunit | phrog_51 | terminase small subunit | head and packaging | 1 | 16407 | 16847 |
| YP_001285363.1 | NC_009526_p49 | hypothetical protein | phrog_132 | head-tail adaptor | connector | 1 | 22937 | 23269 |
| YP_001285369.1 | NC_009526_p55 | hypothetical protein | phrog_441 | tail assembly chaperone | tail | 1 | 25367 | 25711 |
| YP_001285350.1 | NC_009526_p36 | hypothetical protein | phrog_301 | secreted protein | other | 1 | 15071 | 15457 |
| YP_001285346.1 | NC_009526_p32 | dUTPase | phrog_135 | dUTPase | DNA, RNA and nucleotide metabolism | 1 | 13894 | 14406 |
| YP_001285327.1 | NC_009526_p13 | hypothetical protein | phrog_369 | unknown function | unknown function | 1 | 5935 | 6096 |
| YP_001285380.1 | NC_009526_p66 | hypothetical protein | phrog_276 | unknown function | unknown function | 1 | 36411 | 36710 |
| YP_001285338.1 | NC_009526_p24 | RusA | phrog_140 | RusA-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 11394 | 11801 |
| YP_001285370.1 | NC_009526_p56 | tape measure protein | phrog_58 | tail length tape measure protein | tail | 1 | 25728 | 29192 |
| YP_001285386.1 | NC_009526_p72 | hypothetical protein | singleton | unknown function | unknown function | -1 | 42409 | 42636 |
| YP_001285359.1 | NC_009526_p45 | hypothetical protein | phrog_1431 | unknown function | unknown function | 1 | 20732 | 20902 |
| YP_001285330.1 | NC_009526_p16 | e12 | phrog_659 | Sak-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 6672 | 7295 |
| YP_001285382.1 | NC_009526_p68 | tail fiber protein | phrog_1125 | tail fiber protein | tail | 1 | 38758 | 39930 |
| YP_001285319.1 | NC_009526_p5 | hypothetical protein | phrog_1176 | unknown function | unknown function | -1 | 2948 | 3115 |
| YP_001285341.1 | NC_009526_p27 | hypothetical protein | phrog_258 | virulence associated | other | 1 | 12347 | 12595 |
| YP_001285384.1 | NC_009526_p70 | holin | phrog_263 | holin | lysis | 1 | 40387 | 40689 |
| YP_001285340.1 | NC_009526_p26 | hypothetical protein | phrog_201 | Panton-Valentine leukocicin | DNA, RNA and nucleotide metabolism | 1 | 11987 | 12346 |
| YP_001285377.1 | NC_009526_p63 | hypothetical protein | phrog_23714 | unknown function | unknown function | 1 | 35284 | 35505 |
| YP_001285318.1 | NC_009526_p4 | hypothetical protein | phrog_5192 | unknown function | unknown function | -1 | 2603 | 2788 |
| YP_001285349.1 | NC_009526_p35 | hypothetical protein | phrog_555 | unknown function | unknown function | 1 | 14842 | 15078 |
| YP_001285325.1 | NC_009526_p11 | hypothetical protein | phrog_2222 | unknown function | unknown function | -1 | 5525 | 5755 |
| YP_001285339.1 | NC_009526_p25 | hypothetical protein | phrog_299 | unknown function | unknown function | 1 | 11801 | 11986 |
| YP_001285315.1 | NC_009526_p1 | int | phrog_95 | integrase | integration and excision | -1 | 32 | 1417 |
| YP_001285366.1 | NC_009526_p52 | hypothetical protein | phrog_176 | tail terminator | connector | 1 | 23927 | 24310 |
| YP_001285333.1 | NC_009526_p19 | hypothetical protein | phrog_2232 | unknown function | unknown function | -1 | 8517 | 9374 |
| YP_001285332.1 | NC_009526_p18 | hypothetical protein | phrog_398 | unknown function | unknown function | 1 | 7737 | 8411 |
| YP_001285343.1 | NC_009526_p29 | hypothetical protein | phrog_98 | unknown function | unknown function | 1 | 13008 | 13355 |
| YP_001285368.1 | NC_009526_p54 | hypothetical protein | phrog_183 | tail chaperone protein | tail | 1 | 24972 | 25337 |
| YP_001285364.1 | NC_009526_p50 | hypothetical protein | phrog_348 | minor head protein | head and packaging | 1 | 23266 | 23568 |
| YP_001285355.1 | NC_009526_p41 | terminase large subunit | phrog_2 | terminase large subunit | head and packaging | 1 | 16768 | 18111 |
| YP_001285328.1 | NC_009526_p14 | hypothetical protein | phrog_401 | unknown function | unknown function | 1 | 6188 | 6448 |
| YP_001285357.1 | NC_009526_p43 | hypothetical protein | phrog_37440 | unknown function | unknown function | 1 | 19545 | 19730 |
| YP_001285323.1 | NC_009526_p9 | hypothetical protein | phrog_845 | unknown function | unknown function | 1 | 5127 | 5321 |
| YP_001285375.1 | NC_009526_p61 | minor structure protein | phrog_287 | minor tail protein | tail | 1 | 32077 | 33987 |
| YP_001285385.1 | NC_009526_p71 | lyt2 | phrog_489 | endolysin | lysis | 1 | 40701 | 42155 |
| YP_001285361.1 | NC_009526_p47 | major head protein | phrog_10 | major head protein | head and packaging | 1 | 21645 | 22619 |
| YP_001285351.1 | NC_009526_p37 | rinB | phrog_152 | RinB-like transcriptional activator | transcription regulation | 1 | 15454 | 15627 |
| YP_001285317.1 | NC_009526_p3 | hypothetical protein | phrog_13276 | unknown function | unknown function | -1 | 1662 | 2567 |
| YP_001285372.1 | NC_009526_p58 | hypothetical protein | phrog_33 | distal tail protein Dit | tail | 1 | 29205 | 30152 |
| YP_001285353.1 | NC_009526_p39 | rinA | phrog_36 | transcriptional regulator | transcription regulation | 1 | 15798 | 16220 |
| YP_001285322.1 | NC_009526_p8 | antirepressor | phrog_130 | anti-repressor Ant | transcription regulation | 1 | 4323 | 5111 |
| YP_001285362.1 | NC_009526_p48 | hypothetical protein | phrog_390 | Arc-like repressor | transcription regulation | 1 | 22641 | 22928 |
| YP_001285379.1 | NC_009526_p65 | hypothetical protein | phrog_134 | unknown function | unknown function | 1 | 36188 | 36370 |
| YP_001285348.1 | NC_009526_p34 | hypothetical protein | phrog_1122 | unknown function | unknown function | 1 | 14646 | 14849 |
| YP_001285342.1 | NC_009526_p28 | hypothetical protein | phrog_467 | unknown function | unknown function | 1 | 12610 | 13011 |
| YP_001285336.1 | NC_009526_p22 | hypothetical protein | phrog_809 | transcriptional regulator | transcription regulation | 1 | 10992 | 11150 |
| YP_001285345.1 | NC_009526_p31 | hypothetical protein | phrog_266 | unknown function | unknown function | 1 | 13653 | 13889 |
| YP_001285365.1 | NC_009526_p51 | hypothetical protein | phrog_5 | tail completion or Neck1 protein | connector | 1 | 23568 | 23915 |
| YP_001285347.1 | NC_009526_p33 | hypothetical protein | phrog_278 | transcriptional regulator | transcription regulation | 1 | 14443 | 14649 |
| YP_001285367.1 | NC_009526_p53 | major tail protein | phrog_238 | major tail protein | tail | 1 | 24329 | 24910 |
| YP_001285374.1 | NC_009526_p60 | hypothetical protein | phrog_19277 | unknown function | unknown function | 1 | 31875 | 32084 |
| YP_001285371.1 | NC_009526_p57 | inside tape protein | singleton | unknown function | unknown function | 1 | 27980 | 28372 |
| YP_001285387.1 | NC_009526_p73 | hypothetical protein | phrog_9659 | unknown function | unknown function | 1 | 42770 | 43606 |
| YP_001285378.1 | NC_009526_p64 | hypothetical protein | phrog_300 | tail fiber protein | tail | 1 | 35810 | 36187 |
| YP_001285383.1 | NC_009526_p69 | hypothetical protein | phrog_1262 | unknown function | unknown function | 1 | 39936 | 40331 |
| YP_001285381.1 | NC_009526_p67 | lyz | phrog_759 | tail associated cell-wall hydrolase | other | 1 | 36847 | 38745 |
| YP_001285356.1 | NC_009526_p42 | portal protein | phrog_64 | portal protein | head and packaging | 1 | 18122 | 19657 |
| YP_001285373.1 | NC_009526_p59 | hypothetical protein | phrog_663 | minor head protein | head and packaging | 1 | 30161 | 32062 |
| YP_001285329.1 | NC_009526_p15 | hypothetical protein | phrog_946 | unknown function | unknown function | 1 | 6458 | 6679 |
| YP_001285321.1 | NC_009526_p7 | cro-like repressor | phrog_3 | transcriptional repressor | transcription regulation | 1 | 4065 | 4307 |
| YP_001285337.1 | NC_009526_p23 | hypothetical protein | phrog_433 | unknown function | unknown function | 1 | 11163 | 11384 |
| YP_001285360.1 | NC_009526_p46 | scaffold protein | phrog_172 | head scaffolding protein | head and packaging | 1 | 21011 | 21631 |
| YP_001285324.1 | NC_009526_p10 | hypothetical protein | phrog_2312 | unknown function | unknown function | 1 | 5374 | 5550 |
| YP_001285334.1 | NC_009526_p20 | hypothetical protein | phrog_428 | replication initiation protein | DNA, RNA and nucleotide metabolism | 1 | 9439 | 10209 |
| YP_001285358.1 | NC_009526_p44 | minor head protein | phrog_115 | minor head protein | head and packaging | 1 | 19664 | 20659 |