| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_009531 |
Definition |
Cyanophage Syn5, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Autographiviridae; Voetvirus. |
DB of origin |
REFSEQ |
Length |
46214 |
Host Name |
Synechococcus sp. |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
61 |
%GC |
54.97 |
Number of singletons |
23 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_001285427.1 | NC_009531_p18 | hypothetical protein | singleton | unknown function | unknown function | 1 | 7392 | 7544 |
| YP_001285464.1 | NC_009531_p55 | hypothetical protein | singleton | unknown function | unknown function | 1 | 41207 | 41677 |
| YP_001285470.1 | NC_009531_p61 | thymidylate synthase | phrog_10644 | thymidylate synthase | DNA, RNA and nucleotide metabolism | 1 | 45229 | 45720 |
| YP_001285469.1 | NC_009531_p60 | DNA packaging protein | phrog_38 | terminase large subunit | head and packaging | 1 | 43067 | 44791 |
| YP_001285435.1 | NC_009531_p26 | hypothetical protein | phrog_485 | unknown function | unknown function | 1 | 10768 | 11019 |
| YP_001285434.1 | NC_009531_p25 | hypothetical protein | phrog_22 | thioredoxin domain | DNA, RNA and nucleotide metabolism | 1 | 10475 | 10771 |
| YP_001285462.1 | NC_009531_p53 | structural protein | singleton | unknown function | unknown function | 1 | 37982 | 39322 |
| YP_001285448.1 | NC_009531_p39 | major capsid protein | phrog_267 | major head protein | head and packaging | 1 | 20017 | 21015 |
| YP_001285425.1 | NC_009531_p16 | hypothetical protein | phrog_24878 | unknown function | unknown function | 1 | 6459 | 6614 |
| YP_001285430.1 | NC_009531_p21 | ssDNA binding protein | phrog_112 | Gp2.5-like ssDNA binding protein and ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 7832 | 8410 |
| YP_001285449.1 | NC_009531_p40 | tail tubular protein A | phrog_446 | tail protein | tail | 1 | 21072 | 21665 |
| YP_001285418.1 | NC_009531_p9 | hypothetical protein | singleton | unknown function | unknown function | 1 | 2553 | 2714 |
| YP_001285415.1 | NC_009531_p6 | hypothetical protein | phrog_38550 | unknown function | unknown function | 1 | 2103 | 2267 |
| YP_001285452.1 | NC_009531_p43 | internal virion protein | phrog_15746 | internal virion protein | head and packaging | 1 | 24828 | 25532 |
| YP_001285433.1 | NC_009531_p24 | primase/helicase | phrog_239 | DNA primase/helicase | DNA, RNA and nucleotide metabolism | 1 | 8884 | 10488 |
| YP_001285419.1 | NC_009531_p10 | hypothetical protein | singleton | unknown function | unknown function | 1 | 2787 | 3140 |
| YP_001285447.1 | NC_009531_p38 | scaffolding protein | phrog_1052 | head assembly | head and packaging | 1 | 18924 | 19754 |
| YP_001285441.1 | NC_009531_p32 | hypothetical protein | phrog_671 | nucleotide pyrophosphohydrolase | other | 1 | 14184 | 14570 |
| YP_001285446.1 | NC_009531_p37 | head to tail connector | phrog_449 | head-tail adaptor | connector | 1 | 17125 | 18753 |
| YP_001285440.1 | NC_009531_p31 | hypothetical protein | phrog_236 | nucleotide kinase | other | 1 | 13988 | 14194 |
| YP_001285454.1 | NC_009531_p45 | internal virion protein | phrog_6651 | internal virion protein | head and packaging | 1 | 28080 | 32327 |
| YP_001285460.1 | NC_009531_p51 | HNH endonuclease | phrog_2214 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 37369 | 37638 |
| YP_001285417.1 | NC_009531_p8 | hypothetical protein | singleton | unknown function | unknown function | 1 | 2452 | 2556 |
| YP_001285465.1 | NC_009531_p56 | hypothetical protein | singleton | unknown function | unknown function | 1 | 41677 | 41889 |
| YP_001285436.1 | NC_009531_p27 | DNA polymerase | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 11016 | 12767 |
| YP_001285455.1 | NC_009531_p46 | tail fiber | phrog_3484 | tail fiber protein | tail | 1 | 32327 | 36382 |
| YP_001285416.1 | NC_009531_p7 | hypothetical protein | singleton | unknown function | unknown function | 1 | 2270 | 2452 |
| YP_001285466.1 | NC_009531_p57 | hypothetical protein | singleton | unknown function | unknown function | 1 | 41891 | 42286 |
| YP_001285468.1 | NC_009531_p59 | hypothetical protein | phrog_25774 | unknown function | unknown function | 1 | 42932 | 43060 |
| YP_001285458.1 | NC_009531_p49 | hypothetical protein | phrog_891 | terminase small subunit | head and packaging | 1 | 36839 | 37069 |
| YP_001285432.1 | NC_009531_p23 | hypothetical protein | singleton | unknown function | unknown function | 1 | 8751 | 8891 |
| YP_001285463.1 | NC_009531_p54 | structural protein | singleton | unknown function | unknown function | 1 | 39335 | 41203 |
| YP_001285410.1 | NC_009531_p1 | hypothetical protein | singleton | unknown function | unknown function | 1 | 137 | 502 |
| YP_001285457.1 | NC_009531_p48 | hypothetical protein | phrog_2738 | unknown function | unknown function | 1 | 36665 | 36835 |
| YP_001285412.1 | NC_009531_p3 | hypothetical protein | singleton | unknown function | unknown function | 1 | 961 | 1206 |
| YP_001285429.1 | NC_009531_p20 | hypothetical protein | singleton | unknown function | unknown function | 1 | 7747 | 7839 |
| YP_001285411.1 | NC_009531_p2 | hypothetical protein | singleton | unknown function | unknown function | 1 | 790 | 960 |
| YP_001285439.1 | NC_009531_p30 | hypothetical protein | phrog_17835 | unknown function | unknown function | 1 | 13852 | 14010 |
| YP_001285413.1 | NC_009531_p4 | hypothetical protein | singleton | unknown function | unknown function | 1 | 1230 | 1400 |
| YP_001285426.1 | NC_009531_p17 | integrase | phrog_1 | integrase | integration and excision | 1 | 6614 | 7402 |
| YP_001285443.1 | NC_009531_p34 | hypothetical protein | phrog_6799 | ribonucleotide reductase class Ia beta subunit | DNA, RNA and nucleotide metabolism | 1 | 15964 | 16683 |
| YP_001285451.1 | NC_009531_p42 | hypothetical protein | phrog_308 | internal virion protein | head and packaging | 1 | 24385 | 24909 |
| YP_001285467.1 | NC_009531_p58 | structural protein | singleton | unknown function | unknown function | 1 | 42286 | 42795 |
| YP_001285437.1 | NC_009531_p28 | hypothetical protein | phrog_23404 | unknown function | unknown function | 1 | 12796 | 13128 |
| YP_001285422.1 | NC_009531_p13 | hypothetical protein | singleton | unknown function | unknown function | 1 | 3479 | 3685 |
| YP_001285424.1 | NC_009531_p15 | T3/T7-like RNA polymerase | phrog_414 | RNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 4120 | 6459 |
| YP_001285428.1 | NC_009531_p19 | hypothetical protein | singleton | unknown function | unknown function | 1 | 7619 | 7747 |
| YP_001285421.1 | NC_009531_p12 | hypothetical protein | singleton | unknown function | unknown function | 1 | 3282 | 3482 |
| YP_001285453.1 | NC_009531_p44 | internal virion protein | phrog_19560 | virion structural protein | head and packaging | 1 | 25532 | 28042 |
| YP_001285450.1 | NC_009531_p41 | tail tube B | phrog_457 | tail protein | tail | 1 | 21668 | 24385 |
| YP_001285461.1 | NC_009531_p52 | hypothetical protein | singleton | unknown function | unknown function | 1 | 37638 | 37982 |
| YP_001285459.1 | NC_009531_p50 | hypothetical protein | phrog_6437 | unknown function | unknown function | 1 | 37069 | 37347 |
| YP_001285414.1 | NC_009531_p5 | hypothetical protein | singleton | unknown function | unknown function | 1 | 1745 | 2089 |
| YP_001285438.1 | NC_009531_p29 | exonuclease | phrog_107 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 13118 | 13855 |
| YP_001285456.1 | NC_009531_p47 | hypothetical protein | phrog_12220 | unknown function | unknown function | 1 | 36392 | 36652 |
| YP_001285444.1 | NC_009531_p35 | hypothetical protein | phrog_4970 | unknown function | unknown function | 1 | 16676 | 16867 |
| YP_001285445.1 | NC_009531_p36 | proline-rich protein | phrog_13568 | unknown function | unknown function | 1 | 16860 | 17123 |
| YP_001285420.1 | NC_009531_p11 | hypothetical protein | singleton | unknown function | unknown function | 1 | 3140 | 3241 |
| YP_001285431.1 | NC_009531_p22 | endonuclease I | phrog_945 | endonuclease | DNA, RNA and nucleotide metabolism | 1 | 8410 | 8766 |
| YP_001285442.1 | NC_009531_p33 | ribonucleotide reductase | phrog_367 | ribonucleotide reductase | DNA, RNA and nucleotide metabolism | 1 | 14570 | 15964 |
| YP_001285423.1 | NC_009531_p14 | hypothetical protein | phrog_16003 | unknown function | unknown function | 1 | 3667 | 4116 |