Genomic map of Synechococcus phage Syn5 (NC_009531)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_009531
Definition
Cyanophage Syn5, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Autographiviridae; Voetvirus.
DB of origin
REFSEQ
Length
46214
Host Name
Synechococcus sp.
Host domain
Bacteria
Is prophage?
undef
Number of proteins
61
%GC
54.97
Number of singletons
23
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_001285427.1 NC_009531_p18 hypothetical protein singleton unknown function unknown function 1 7392 7544
YP_001285464.1 NC_009531_p55 hypothetical protein singleton unknown function unknown function 1 41207 41677
YP_001285470.1 NC_009531_p61 thymidylate synthase phrog_10644 thymidylate synthase DNA, RNA and nucleotide metabolism 1 45229 45720
YP_001285469.1 NC_009531_p60 DNA packaging protein phrog_38 terminase large subunit head and packaging 1 43067 44791
YP_001285435.1 NC_009531_p26 hypothetical protein phrog_485 unknown function unknown function 1 10768 11019
YP_001285434.1 NC_009531_p25 hypothetical protein phrog_22 thioredoxin domain DNA, RNA and nucleotide metabolism 1 10475 10771
YP_001285462.1 NC_009531_p53 structural protein singleton unknown function unknown function 1 37982 39322
YP_001285448.1 NC_009531_p39 major capsid protein phrog_267 major head protein head and packaging 1 20017 21015
YP_001285425.1 NC_009531_p16 hypothetical protein phrog_24878 unknown function unknown function 1 6459 6614
YP_001285430.1 NC_009531_p21 ssDNA binding protein phrog_112 Gp2.5-like ssDNA binding protein and ssDNA annealing protein DNA, RNA and nucleotide metabolism 1 7832 8410
YP_001285449.1 NC_009531_p40 tail tubular protein A phrog_446 tail protein tail 1 21072 21665
YP_001285418.1 NC_009531_p9 hypothetical protein singleton unknown function unknown function 1 2553 2714
YP_001285415.1 NC_009531_p6 hypothetical protein phrog_38550 unknown function unknown function 1 2103 2267
YP_001285452.1 NC_009531_p43 internal virion protein phrog_15746 internal virion protein head and packaging 1 24828 25532
YP_001285433.1 NC_009531_p24 primase/helicase phrog_239 DNA primase/helicase DNA, RNA and nucleotide metabolism 1 8884 10488
YP_001285419.1 NC_009531_p10 hypothetical protein singleton unknown function unknown function 1 2787 3140
YP_001285447.1 NC_009531_p38 scaffolding protein phrog_1052 head assembly head and packaging 1 18924 19754
YP_001285441.1 NC_009531_p32 hypothetical protein phrog_671 nucleotide pyrophosphohydrolase other 1 14184 14570
YP_001285446.1 NC_009531_p37 head to tail connector phrog_449 head-tail adaptor connector 1 17125 18753
YP_001285440.1 NC_009531_p31 hypothetical protein phrog_236 nucleotide kinase other 1 13988 14194
YP_001285454.1 NC_009531_p45 internal virion protein phrog_6651 internal virion protein head and packaging 1 28080 32327
YP_001285460.1 NC_009531_p51 HNH endonuclease phrog_2214 HNH endonuclease DNA, RNA and nucleotide metabolism 1 37369 37638
YP_001285417.1 NC_009531_p8 hypothetical protein singleton unknown function unknown function 1 2452 2556
YP_001285465.1 NC_009531_p56 hypothetical protein singleton unknown function unknown function 1 41677 41889
YP_001285436.1 NC_009531_p27 DNA polymerase phrog_17 DNA polymerase DNA, RNA and nucleotide metabolism 1 11016 12767
YP_001285455.1 NC_009531_p46 tail fiber phrog_3484 tail fiber protein tail 1 32327 36382
YP_001285416.1 NC_009531_p7 hypothetical protein singleton unknown function unknown function 1 2270 2452
YP_001285466.1 NC_009531_p57 hypothetical protein singleton unknown function unknown function 1 41891 42286
YP_001285468.1 NC_009531_p59 hypothetical protein phrog_25774 unknown function unknown function 1 42932 43060
YP_001285458.1 NC_009531_p49 hypothetical protein phrog_891 terminase small subunit head and packaging 1 36839 37069
YP_001285432.1 NC_009531_p23 hypothetical protein singleton unknown function unknown function 1 8751 8891
YP_001285463.1 NC_009531_p54 structural protein singleton unknown function unknown function 1 39335 41203
YP_001285410.1 NC_009531_p1 hypothetical protein singleton unknown function unknown function 1 137 502
YP_001285457.1 NC_009531_p48 hypothetical protein phrog_2738 unknown function unknown function 1 36665 36835
YP_001285412.1 NC_009531_p3 hypothetical protein singleton unknown function unknown function 1 961 1206
YP_001285429.1 NC_009531_p20 hypothetical protein singleton unknown function unknown function 1 7747 7839
YP_001285411.1 NC_009531_p2 hypothetical protein singleton unknown function unknown function 1 790 960
YP_001285439.1 NC_009531_p30 hypothetical protein phrog_17835 unknown function unknown function 1 13852 14010
YP_001285413.1 NC_009531_p4 hypothetical protein singleton unknown function unknown function 1 1230 1400
YP_001285426.1 NC_009531_p17 integrase phrog_1 integrase integration and excision 1 6614 7402
YP_001285443.1 NC_009531_p34 hypothetical protein phrog_6799 ribonucleotide reductase class Ia beta subunit DNA, RNA and nucleotide metabolism 1 15964 16683
YP_001285451.1 NC_009531_p42 hypothetical protein phrog_308 internal virion protein head and packaging 1 24385 24909
YP_001285467.1 NC_009531_p58 structural protein singleton unknown function unknown function 1 42286 42795
YP_001285437.1 NC_009531_p28 hypothetical protein phrog_23404 unknown function unknown function 1 12796 13128
YP_001285422.1 NC_009531_p13 hypothetical protein singleton unknown function unknown function 1 3479 3685
YP_001285424.1 NC_009531_p15 T3/T7-like RNA polymerase phrog_414 RNA polymerase DNA, RNA and nucleotide metabolism 1 4120 6459
YP_001285428.1 NC_009531_p19 hypothetical protein singleton unknown function unknown function 1 7619 7747
YP_001285421.1 NC_009531_p12 hypothetical protein singleton unknown function unknown function 1 3282 3482
YP_001285453.1 NC_009531_p44 internal virion protein phrog_19560 virion structural protein head and packaging 1 25532 28042
YP_001285450.1 NC_009531_p41 tail tube B phrog_457 tail protein tail 1 21668 24385
YP_001285461.1 NC_009531_p52 hypothetical protein singleton unknown function unknown function 1 37638 37982
YP_001285459.1 NC_009531_p50 hypothetical protein phrog_6437 unknown function unknown function 1 37069 37347
YP_001285414.1 NC_009531_p5 hypothetical protein singleton unknown function unknown function 1 1745 2089
YP_001285438.1 NC_009531_p29 exonuclease phrog_107 exonuclease DNA, RNA and nucleotide metabolism 1 13118 13855
YP_001285456.1 NC_009531_p47 hypothetical protein phrog_12220 unknown function unknown function 1 36392 36652
YP_001285444.1 NC_009531_p35 hypothetical protein phrog_4970 unknown function unknown function 1 16676 16867
YP_001285445.1 NC_009531_p36 proline-rich protein phrog_13568 unknown function unknown function 1 16860 17123
YP_001285420.1 NC_009531_p11 hypothetical protein singleton unknown function unknown function 1 3140 3241
YP_001285431.1 NC_009531_p22 endonuclease I phrog_945 endonuclease DNA, RNA and nucleotide metabolism 1 8410 8766
YP_001285442.1 NC_009531_p33 ribonucleotide reductase phrog_367 ribonucleotide reductase DNA, RNA and nucleotide metabolism 1 14570 15964
YP_001285423.1 NC_009531_p14 hypothetical protein phrog_16003 unknown function unknown function 1 3667 4116