Genomic map of Escherichia virus TLS (NC_009540)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_009540
Definition
Enterobacteria phage TLS, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Drexlerviridae; Tempevirinae; Tlsvirus.
DB of origin
REFSEQ
Length
49902
Host Name
Shigella flexneri
Host domain
Bacteria
Is prophage?
undef
Number of proteins
87
%GC
42.67
Number of singletons
4
Number of paralogs
2

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_001285554.1 NC_009540_p65 hypothetical protein phrog_2817 unknown function unknown function 1 39844 40086
YP_001285512.1 NC_009540_p23 hypothetical protein phrog_1312 unknown function unknown function 1 7408 7536
YP_001285529.1 NC_009540_p40 hypothetical protein phrog_169 tail completion or Neck1 protein connector 1 17208 17648
YP_001285500.1 NC_009540_p11 hypothetical protein phrog_9755 unknown function unknown function 1 3875 4060
YP_001285509.1 NC_009540_p20 hypothetical protein phrog_6031 unknown function unknown function 1 6556 6765
YP_001285520.1 NC_009540_p31 PorT phrog_146 portal protein head and packaging 1 10940 12247
YP_001285535.1 NC_009540_p46 TtpM phrog_24 tail length tape measure protein tail 1 19527 22364
YP_001285517.1 NC_009540_p28 hypothetical protein phrog_5976 unknown function unknown function 1 8474 8704
YP_001285533.1 NC_009540_p44 TfmA phrog_569 tail length tape measure protein tail 1 18779 19099
YP_001285524.1 NC_009540_p35 HdeC phrog_1989 unknown function unknown function 1 14557 14997
YP_001285539.1 NC_009540_p50 hypothetical protein phrog_32 tail assembly protein tail 1 24249 24848
YP_001285499.1 NC_009540_p10 hypothetical protein phrog_14011 unknown function unknown function 1 3676 3864
YP_001285544.1 NC_009540_p55 Ssb phrog_44 single strand DNA binding protein DNA, RNA and nucleotide metabolism 1 31336 31761
YP_001285492.1 NC_009540_p3 hypothetical protein singleton unknown function unknown function 1 1321 1500
YP_001285557.1 NC_009540_p68 HolN phrog_2877 holin lysis 1 41868 42092
YP_001285576.1 NC_009540_p87 hypothetical protein phrog_4653 unknown function unknown function -1 49549 49707
YP_001285553.1 NC_009540_p64 hypothetical protein phrog_2180 unknown function unknown function 1 39666 39863
YP_001285496.1 NC_009540_p7 hypothetical protein phrog_8382 unknown function unknown function 1 2634 2948
YP_001285568.1 NC_009540_p79 hypothetical protein phrog_5016 unknown function unknown function -1 47391 47636
YP_001285572.1 NC_009540_p83 hypothetical protein phrog_7421 unknown function unknown function -1 48624 48845
YP_001285556.1 NC_009540_p67 hypothetical protein phrog_704 DNA repair exonuclease DNA, RNA and nucleotide metabolism 1 40640 41755
YP_001285561.1 NC_009540_p72 YfiJ phrog_2373 DNA helicase DNA, RNA and nucleotide metabolism -1 43502 45082
YP_001285560.1 NC_009540_p71 hypothetical protein phrog_2794 unknown function unknown function -1 43107 43499
YP_001285494.1 NC_009540_p5 Stp phrog_6763 activator of host PrrC lysyl-tRNA endonuclease moron, auxiliary metabolic gene and host takeover 1 1865 1945
YP_001285534.1 NC_009540_p45 TfmB phrog_680 tail length tape measure protein tail 1 19219 19416
YP_001285551.1 NC_009540_p62 Dam phrog_111 DNA methyltransferase other 1 38655 39395
YP_001285541.1 NC_009540_p52 RecE phrog_412 exonuclease VIII DNA, RNA and nucleotide metabolism 1 29118 30221
YP_001285504.1 NC_009540_p15 hypothetical protein phrog_9122 unknown function unknown function 1 5220 5417
YP_001285516.1 NC_009540_p27 hypothetical protein phrog_2919 unknown function unknown function 1 8325 8474
YP_001285490.1 NC_009540_p1 hypothetical protein phrog_4841 unknown function unknown function 1 589 1038
YP_001285563.1 NC_009540_p74 hypothetical protein phrog_2684 unknown function unknown function -1 45392 45754
YP_001285521.1 NC_009540_p32 HmpH phrog_324 head morphogenesis head and packaging 1 12247 12915
YP_001285552.1 NC_009540_p63 hypothetical protein phrog_2676 unknown function unknown function 1 39397 39627
YP_001285540.1 NC_009540_p51 TspJ phrog_31 central tail fiber J tail 1 24930 28706
YP_001285507.1 NC_009540_p18 hypothetical protein phrog_8758 unknown function unknown function 1 5712 5957
YP_001285537.1 NC_009540_p48 thmL phrog_18 minor tail protein tail 1 22779 23537
YP_001285562.1 NC_009540_p73 hypothetical protein phrog_12725 unknown function unknown function -1 45150 45395
YP_001285515.1 NC_009540_p26 hypothetical protein phrog_6666 unknown function unknown function 1 8147 8308
YP_001285518.1 NC_009540_p29 TerS phrog_606 terminase small subunit head and packaging 1 8792 9316
YP_001285538.1 NC_009540_p49 hypothetical protein phrog_30 minor tail protein tail 1 23534 24256
YP_001285536.1 NC_009540_p47 hypothetical protein phrog_14 minor tail protein tail 1 22364 22711
YP_001285525.1 NC_009540_p36 HsbB phrog_264 major head protein head and packaging 1 15072 16061
YP_001285495.1 NC_009540_p6 hypothetical protein phrog_7116 unknown function unknown function 1 2007 2573
YP_001285569.1 NC_009540_p80 EndZ phrog_99 HNH endonuclease DNA, RNA and nucleotide metabolism -1 47608 48120
YP_001285549.1 NC_009540_p60 hypothetical protein phrog_824 unknown function unknown function 1 37896 38303
YP_001285511.1 NC_009540_p22 hypothetical protein phrog_11192 unknown function unknown function 1 7010 7348
YP_001285559.1 NC_009540_p70 RzlA phrog_1804 Rz-like spanin lysis 1 42583 42972
YP_001285498.1 NC_009540_p9 PnkP, Polynucleotide Kinase, Partial phrog_415 polynucleotide kinase other 1 3132 3695
YP_001285519.1 NC_009540_p30 TerL phrog_38 terminase large subunit head and packaging 1 9328 10899
YP_001285558.1 NC_009540_p69 LysN phrog_7 endolysin lysis 1 42092 42586
YP_001285555.1 NC_009540_p66 EndY phrog_99 HNH endonuclease DNA, RNA and nucleotide metabolism 1 39965 40636
YP_001285527.1 NC_009540_p38 hypothetical protein phrog_302 virion structural protein head and packaging 1 16443 16847
YP_001285491.1 NC_009540_p2 hypothetical protein singleton unknown function unknown function 1 1042 1290
YP_001285528.1 NC_009540_p39 hypothetical protein phrog_161 head closure Hc1 connector 1 16844 17215
YP_001285531.1 NC_009540_p42 TsbA phrog_584 major tail protein tail 1 18045 18707
YP_001285573.1 NC_009540_p84 hypothetical protein phrog_5579 unknown function unknown function -1 48921 49064
YP_001285565.1 NC_009540_p76 hypothetical protein phrog_9323 unknown function unknown function -1 46721 46945
YP_001285564.1 NC_009540_p75 Dcm phrog_757 DNA methyltransferase other -1 45827 46606
YP_001285542.1 NC_009540_p53 hypothetical protein phrog_11265 tail length tape measure protein tail 1 30251 30589
YP_001285508.1 NC_009540_p19 hypothetical protein phrog_13504 unknown function unknown function 1 5969 6481
YP_001285497.1 NC_009540_p8 hypothetical protein phrog_17726 unknown function unknown function 1 3021 3128
YP_001285550.1 NC_009540_p61 hypothetical protein phrog_7420 unknown function unknown function 1 38231 38653
YP_001285522.1 NC_009540_p33 HspA phrog_530 head maturation protease head and packaging 1 12912 14021
YP_001285503.1 NC_009540_p14 hypothetical protein phrog_139 deoxynucleoside monophosphate kinase other 1 4681 5139
YP_001285506.1 NC_009540_p17 hypothetical protein singleton unknown function unknown function 1 5576 5719
YP_001285514.1 NC_009540_p25 hypothetical protein phrog_30084 unknown function unknown function 1 7948 8157
YP_001285548.1 NC_009540_p59 HelA phrog_16 DNA helicase DNA, RNA and nucleotide metabolism 1 35921 37894
YP_001285513.1 NC_009540_p24 hypothetical protein phrog_303 unknown function unknown function 1 7538 7765
YP_001285530.1 NC_009540_p41 hypothetical protein phrog_179 tail terminator connector 1 17638 18030
YP_001285502.1 NC_009540_p13 hypothetical protein phrog_16293 unknown function unknown function 1 4389 4571
YP_001285571.1 NC_009540_p82 hypothetical protein phrog_14152 unknown function unknown function -1 48387 48623
YP_001285574.1 NC_009540_p85 hypothetical protein singleton unknown function unknown function -1 49061 49279
YP_001285575.1 NC_009540_p86 hypothetical protein phrog_1972 unknown function unknown function -1 49281 49565
YP_001285546.1 NC_009540_p57 PriA phrog_510 DNA primase DNA, RNA and nucleotide metabolism -1 34239 35165
YP_001285501.1 NC_009540_p12 hypothetical protein phrog_30280 unknown function unknown function 1 4138 4392
YP_001285566.1 NC_009540_p77 hypothetical protein phrog_4344 unknown function unknown function -1 46947 47168
YP_001285567.1 NC_009540_p78 hypothetical protein phrog_16768 unknown function unknown function -1 47227 47394
YP_001285545.1 NC_009540_p56 Stf phrog_5481 tail fiber protein tail -1 32060 34084
YP_001285523.1 NC_009540_p34 HtjA phrog_1989 unknown function unknown function 1 14034 14513
YP_001285526.1 NC_009540_p37 hypothetical protein phrog_2716 unknown function unknown function 1 16122 16394
YP_001285570.1 NC_009540_p81 hypothetical protein phrog_6503 unknown function unknown function -1 48196 48390
YP_001285543.1 NC_009540_p54 RecT phrog_155 Erf-like ssDNA annealing protein DNA, RNA and nucleotide metabolism 1 30636 31298
YP_001285505.1 NC_009540_p16 hypothetical protein phrog_20227 unknown function unknown function 1 5419 5583
YP_001285547.1 NC_009540_p58 hypothetical protein phrog_2856 transcriptional regulator transcription regulation -1 35224 35832
YP_001285493.1 NC_009540_p4 gp04, Hypothetical Protein phrog_13854 unknown function unknown function 1 1598 1855
YP_001285532.1 NC_009540_p43 TfmS phrog_17368 tail length tape measure protein tail 1 18779 19416
YP_001285510.1 NC_009540_p21 hypothetical protein phrog_11097 unknown function unknown function 1 6762 7013