| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_009540 |
Definition |
Enterobacteria phage TLS, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Drexlerviridae; Tempevirinae; Tlsvirus. |
DB of origin |
REFSEQ |
Length |
49902 |
Host Name |
Shigella flexneri |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
87 |
%GC |
42.67 |
Number of singletons |
4 |
Number of paralogs |
2 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_001285554.1 | NC_009540_p65 | hypothetical protein | phrog_2817 | unknown function | unknown function | 1 | 39844 | 40086 |
| YP_001285512.1 | NC_009540_p23 | hypothetical protein | phrog_1312 | unknown function | unknown function | 1 | 7408 | 7536 |
| YP_001285529.1 | NC_009540_p40 | hypothetical protein | phrog_169 | tail completion or Neck1 protein | connector | 1 | 17208 | 17648 |
| YP_001285500.1 | NC_009540_p11 | hypothetical protein | phrog_9755 | unknown function | unknown function | 1 | 3875 | 4060 |
| YP_001285509.1 | NC_009540_p20 | hypothetical protein | phrog_6031 | unknown function | unknown function | 1 | 6556 | 6765 |
| YP_001285520.1 | NC_009540_p31 | PorT | phrog_146 | portal protein | head and packaging | 1 | 10940 | 12247 |
| YP_001285535.1 | NC_009540_p46 | TtpM | phrog_24 | tail length tape measure protein | tail | 1 | 19527 | 22364 |
| YP_001285517.1 | NC_009540_p28 | hypothetical protein | phrog_5976 | unknown function | unknown function | 1 | 8474 | 8704 |
| YP_001285533.1 | NC_009540_p44 | TfmA | phrog_569 | tail length tape measure protein | tail | 1 | 18779 | 19099 |
| YP_001285524.1 | NC_009540_p35 | HdeC | phrog_1989 | unknown function | unknown function | 1 | 14557 | 14997 |
| YP_001285539.1 | NC_009540_p50 | hypothetical protein | phrog_32 | tail assembly protein | tail | 1 | 24249 | 24848 |
| YP_001285499.1 | NC_009540_p10 | hypothetical protein | phrog_14011 | unknown function | unknown function | 1 | 3676 | 3864 |
| YP_001285544.1 | NC_009540_p55 | Ssb | phrog_44 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 31336 | 31761 |
| YP_001285492.1 | NC_009540_p3 | hypothetical protein | singleton | unknown function | unknown function | 1 | 1321 | 1500 |
| YP_001285557.1 | NC_009540_p68 | HolN | phrog_2877 | holin | lysis | 1 | 41868 | 42092 |
| YP_001285576.1 | NC_009540_p87 | hypothetical protein | phrog_4653 | unknown function | unknown function | -1 | 49549 | 49707 |
| YP_001285553.1 | NC_009540_p64 | hypothetical protein | phrog_2180 | unknown function | unknown function | 1 | 39666 | 39863 |
| YP_001285496.1 | NC_009540_p7 | hypothetical protein | phrog_8382 | unknown function | unknown function | 1 | 2634 | 2948 |
| YP_001285568.1 | NC_009540_p79 | hypothetical protein | phrog_5016 | unknown function | unknown function | -1 | 47391 | 47636 |
| YP_001285572.1 | NC_009540_p83 | hypothetical protein | phrog_7421 | unknown function | unknown function | -1 | 48624 | 48845 |
| YP_001285556.1 | NC_009540_p67 | hypothetical protein | phrog_704 | DNA repair exonuclease | DNA, RNA and nucleotide metabolism | 1 | 40640 | 41755 |
| YP_001285561.1 | NC_009540_p72 | YfiJ | phrog_2373 | DNA helicase | DNA, RNA and nucleotide metabolism | -1 | 43502 | 45082 |
| YP_001285560.1 | NC_009540_p71 | hypothetical protein | phrog_2794 | unknown function | unknown function | -1 | 43107 | 43499 |
| YP_001285494.1 | NC_009540_p5 | Stp | phrog_6763 | activator of host PrrC lysyl-tRNA endonuclease | moron, auxiliary metabolic gene and host takeover | 1 | 1865 | 1945 |
| YP_001285534.1 | NC_009540_p45 | TfmB | phrog_680 | tail length tape measure protein | tail | 1 | 19219 | 19416 |
| YP_001285551.1 | NC_009540_p62 | Dam | phrog_111 | DNA methyltransferase | other | 1 | 38655 | 39395 |
| YP_001285541.1 | NC_009540_p52 | RecE | phrog_412 | exonuclease VIII | DNA, RNA and nucleotide metabolism | 1 | 29118 | 30221 |
| YP_001285504.1 | NC_009540_p15 | hypothetical protein | phrog_9122 | unknown function | unknown function | 1 | 5220 | 5417 |
| YP_001285516.1 | NC_009540_p27 | hypothetical protein | phrog_2919 | unknown function | unknown function | 1 | 8325 | 8474 |
| YP_001285490.1 | NC_009540_p1 | hypothetical protein | phrog_4841 | unknown function | unknown function | 1 | 589 | 1038 |
| YP_001285563.1 | NC_009540_p74 | hypothetical protein | phrog_2684 | unknown function | unknown function | -1 | 45392 | 45754 |
| YP_001285521.1 | NC_009540_p32 | HmpH | phrog_324 | head morphogenesis | head and packaging | 1 | 12247 | 12915 |
| YP_001285552.1 | NC_009540_p63 | hypothetical protein | phrog_2676 | unknown function | unknown function | 1 | 39397 | 39627 |
| YP_001285540.1 | NC_009540_p51 | TspJ | phrog_31 | central tail fiber J | tail | 1 | 24930 | 28706 |
| YP_001285507.1 | NC_009540_p18 | hypothetical protein | phrog_8758 | unknown function | unknown function | 1 | 5712 | 5957 |
| YP_001285537.1 | NC_009540_p48 | thmL | phrog_18 | minor tail protein | tail | 1 | 22779 | 23537 |
| YP_001285562.1 | NC_009540_p73 | hypothetical protein | phrog_12725 | unknown function | unknown function | -1 | 45150 | 45395 |
| YP_001285515.1 | NC_009540_p26 | hypothetical protein | phrog_6666 | unknown function | unknown function | 1 | 8147 | 8308 |
| YP_001285518.1 | NC_009540_p29 | TerS | phrog_606 | terminase small subunit | head and packaging | 1 | 8792 | 9316 |
| YP_001285538.1 | NC_009540_p49 | hypothetical protein | phrog_30 | minor tail protein | tail | 1 | 23534 | 24256 |
| YP_001285536.1 | NC_009540_p47 | hypothetical protein | phrog_14 | minor tail protein | tail | 1 | 22364 | 22711 |
| YP_001285525.1 | NC_009540_p36 | HsbB | phrog_264 | major head protein | head and packaging | 1 | 15072 | 16061 |
| YP_001285495.1 | NC_009540_p6 | hypothetical protein | phrog_7116 | unknown function | unknown function | 1 | 2007 | 2573 |
| YP_001285569.1 | NC_009540_p80 | EndZ | phrog_99 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 47608 | 48120 |
| YP_001285549.1 | NC_009540_p60 | hypothetical protein | phrog_824 | unknown function | unknown function | 1 | 37896 | 38303 |
| YP_001285511.1 | NC_009540_p22 | hypothetical protein | phrog_11192 | unknown function | unknown function | 1 | 7010 | 7348 |
| YP_001285559.1 | NC_009540_p70 | RzlA | phrog_1804 | Rz-like spanin | lysis | 1 | 42583 | 42972 |
| YP_001285498.1 | NC_009540_p9 | PnkP, Polynucleotide Kinase, Partial | phrog_415 | polynucleotide kinase | other | 1 | 3132 | 3695 |
| YP_001285519.1 | NC_009540_p30 | TerL | phrog_38 | terminase large subunit | head and packaging | 1 | 9328 | 10899 |
| YP_001285558.1 | NC_009540_p69 | LysN | phrog_7 | endolysin | lysis | 1 | 42092 | 42586 |
| YP_001285555.1 | NC_009540_p66 | EndY | phrog_99 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 39965 | 40636 |
| YP_001285527.1 | NC_009540_p38 | hypothetical protein | phrog_302 | virion structural protein | head and packaging | 1 | 16443 | 16847 |
| YP_001285491.1 | NC_009540_p2 | hypothetical protein | singleton | unknown function | unknown function | 1 | 1042 | 1290 |
| YP_001285528.1 | NC_009540_p39 | hypothetical protein | phrog_161 | head closure Hc1 | connector | 1 | 16844 | 17215 |
| YP_001285531.1 | NC_009540_p42 | TsbA | phrog_584 | major tail protein | tail | 1 | 18045 | 18707 |
| YP_001285573.1 | NC_009540_p84 | hypothetical protein | phrog_5579 | unknown function | unknown function | -1 | 48921 | 49064 |
| YP_001285565.1 | NC_009540_p76 | hypothetical protein | phrog_9323 | unknown function | unknown function | -1 | 46721 | 46945 |
| YP_001285564.1 | NC_009540_p75 | Dcm | phrog_757 | DNA methyltransferase | other | -1 | 45827 | 46606 |
| YP_001285542.1 | NC_009540_p53 | hypothetical protein | phrog_11265 | tail length tape measure protein | tail | 1 | 30251 | 30589 |
| YP_001285508.1 | NC_009540_p19 | hypothetical protein | phrog_13504 | unknown function | unknown function | 1 | 5969 | 6481 |
| YP_001285497.1 | NC_009540_p8 | hypothetical protein | phrog_17726 | unknown function | unknown function | 1 | 3021 | 3128 |
| YP_001285550.1 | NC_009540_p61 | hypothetical protein | phrog_7420 | unknown function | unknown function | 1 | 38231 | 38653 |
| YP_001285522.1 | NC_009540_p33 | HspA | phrog_530 | head maturation protease | head and packaging | 1 | 12912 | 14021 |
| YP_001285503.1 | NC_009540_p14 | hypothetical protein | phrog_139 | deoxynucleoside monophosphate kinase | other | 1 | 4681 | 5139 |
| YP_001285506.1 | NC_009540_p17 | hypothetical protein | singleton | unknown function | unknown function | 1 | 5576 | 5719 |
| YP_001285514.1 | NC_009540_p25 | hypothetical protein | phrog_30084 | unknown function | unknown function | 1 | 7948 | 8157 |
| YP_001285548.1 | NC_009540_p59 | HelA | phrog_16 | DNA helicase | DNA, RNA and nucleotide metabolism | 1 | 35921 | 37894 |
| YP_001285513.1 | NC_009540_p24 | hypothetical protein | phrog_303 | unknown function | unknown function | 1 | 7538 | 7765 |
| YP_001285530.1 | NC_009540_p41 | hypothetical protein | phrog_179 | tail terminator | connector | 1 | 17638 | 18030 |
| YP_001285502.1 | NC_009540_p13 | hypothetical protein | phrog_16293 | unknown function | unknown function | 1 | 4389 | 4571 |
| YP_001285571.1 | NC_009540_p82 | hypothetical protein | phrog_14152 | unknown function | unknown function | -1 | 48387 | 48623 |
| YP_001285574.1 | NC_009540_p85 | hypothetical protein | singleton | unknown function | unknown function | -1 | 49061 | 49279 |
| YP_001285575.1 | NC_009540_p86 | hypothetical protein | phrog_1972 | unknown function | unknown function | -1 | 49281 | 49565 |
| YP_001285546.1 | NC_009540_p57 | PriA | phrog_510 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 34239 | 35165 |
| YP_001285501.1 | NC_009540_p12 | hypothetical protein | phrog_30280 | unknown function | unknown function | 1 | 4138 | 4392 |
| YP_001285566.1 | NC_009540_p77 | hypothetical protein | phrog_4344 | unknown function | unknown function | -1 | 46947 | 47168 |
| YP_001285567.1 | NC_009540_p78 | hypothetical protein | phrog_16768 | unknown function | unknown function | -1 | 47227 | 47394 |
| YP_001285545.1 | NC_009540_p56 | Stf | phrog_5481 | tail fiber protein | tail | -1 | 32060 | 34084 |
| YP_001285523.1 | NC_009540_p34 | HtjA | phrog_1989 | unknown function | unknown function | 1 | 14034 | 14513 |
| YP_001285526.1 | NC_009540_p37 | hypothetical protein | phrog_2716 | unknown function | unknown function | 1 | 16122 | 16394 |
| YP_001285570.1 | NC_009540_p81 | hypothetical protein | phrog_6503 | unknown function | unknown function | -1 | 48196 | 48390 |
| YP_001285543.1 | NC_009540_p54 | RecT | phrog_155 | Erf-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 30636 | 31298 |
| YP_001285505.1 | NC_009540_p16 | hypothetical protein | phrog_20227 | unknown function | unknown function | 1 | 5419 | 5583 |
| YP_001285547.1 | NC_009540_p58 | hypothetical protein | phrog_2856 | transcriptional regulator | transcription regulation | -1 | 35224 | 35832 |
| YP_001285493.1 | NC_009540_p4 | gp04, Hypothetical Protein | phrog_13854 | unknown function | unknown function | 1 | 1598 | 1855 |
| YP_001285532.1 | NC_009540_p43 | TfmS | phrog_17368 | tail length tape measure protein | tail | 1 | 18779 | 19416 |
| YP_001285510.1 | NC_009540_p21 | hypothetical protein | phrog_11097 | unknown function | unknown function | 1 | 6762 | 7013 |