| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_009541 |
Definition |
Propionibacterium phage PA6, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Pahexavirus. |
DB of origin |
REFSEQ |
Length |
29739 |
Host Name |
Propionibacterium acnes |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
48 |
%GC |
54.02 |
Number of singletons |
2 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_001285607.1 | NC_009541_p31 | similar to Bxb1 gp50 | phrog_849 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 20661 | 21332 |
| YP_001285582.1 | NC_009541_p6 | similar to Che9d gp7 | phrog_10 | major head protein | head and packaging | 1 | 4645 | 5592 |
| YP_001285623.1 | NC_009541_p47 | 6.7 kDa hypothetical protein | phrog_5628 | unknown function | unknown function | 1 | 29190 | 29369 |
| YP_001285579.1 | NC_009541_p3 | similar to TM4 gp5 | phrog_104 | portal protein | head and packaging | 1 | 1886 | 3211 |
| YP_001285610.1 | NC_009541_p34 | similar to Bxb1 gp57 | phrog_243 | DnaB-like replicative helicase | DNA, RNA and nucleotide metabolism | -1 | 21796 | 22749 |
| YP_001285612.1 | NC_009541_p36 | similar to Bxb1 gp43 | phrog_1890 | unknown function | unknown function | -1 | 23312 | 23722 |
| YP_001285584.1 | NC_009541_p8 | 13.1 kDa hypothetical protein | phrog_501 | head closure Hc1 | connector | 1 | 6101 | 6448 |
| YP_001285602.1 | NC_009541_p26 | 12.3 kDa hypothetical protein | phrog_1340 | unknown function | unknown function | -1 | 17938 | 18258 |
| YP_001285615.1 | NC_009541_p39 | 7.2 kDa hypothetical protein | phrog_1937 | unknown function | unknown function | -1 | 25131 | 25334 |
| YP_001285611.1 | NC_009541_p35 | 17.3 kDa hypothetical protein | phrog_1288 | unknown function | unknown function | -1 | 22791 | 23261 |
| YP_001285590.1 | NC_009541_p14 | similar to TM4 gp17 | phrog_58 | tail length tape measure protein | tail | 1 | 8532 | 11297 |
| YP_001285595.1 | NC_009541_p19 | similar to Homo sapiens collagen | phrog_1806 | collagen like minor tail | tail | 1 | 14630 | 15319 |
| YP_001285578.1 | NC_009541_p2 | similar to TM4 gp4 | phrog_9 | terminase large subunit | head and packaging | 1 | 378 | 1889 |
| YP_001285587.1 | NC_009541_p11 | similar to phiLC3 MTP | phrog_117 | major tail protein | tail | 1 | 7172 | 7813 |
| YP_001285592.1 | NC_009541_p16 | similar to Bxb1 gp45 | phrog_110 | minor tail protein | tail | 1 | 12270 | 13427 |
| YP_001285586.1 | NC_009541_p10 | 12.9 kDa hypothetical protein | phrog_1892 | minor tail protein | tail | 1 | 6766 | 7113 |
| YP_001285606.1 | NC_009541_p30 | 22.5 kDa hypothetical protein | phrog_1881 | unknown function | unknown function | -1 | 20053 | 20616 |
| YP_001285577.1 | NC_009541_p1 | similar to TM4 gp4 | phrog_1897 | terminase small subunit | head and packaging | 1 | 2 | 373 |
| YP_001285613.1 | NC_009541_p37 | similar to Bxb1 gp62 | phrog_1870 | exonuclease | DNA, RNA and nucleotide metabolism | -1 | 23719 | 24666 |
| YP_001285609.1 | NC_009541_p33 | similar to Bxz1 gp15 | phrog_244 | RusA-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | -1 | 21530 | 21886 |
| YP_001285588.1 | NC_009541_p12 | 10.6 kDa hypothetical protein | phrog_1927 | tail assembly chaperone | tail | 1 | 7842 | 8138 |
| YP_001285600.1 | NC_009541_p24 | 14.7 kDa sigma factor (SigE) | phrog_1729 | unknown function | unknown function | -1 | 17245 | 17637 |
| YP_001285581.1 | NC_009541_p5 | similar to TM4 gp8 | phrog_1879 | head scaffolding protein | head and packaging | 1 | 4084 | 4638 |
| YP_001285608.1 | NC_009541_p32 | 15.4 kDa DNA primase | phrog_2304 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 21169 | 21570 |
| YP_001285605.1 | NC_009541_p29 | 15.6 kDa hypothetical protein | singleton | unknown function | unknown function | -1 | 19513 | 19953 |
| YP_001285583.1 | NC_009541_p7 | similar to Che9d gp9 | phrog_1290 | head-tail adaptor | connector | 1 | 5638 | 6099 |
| YP_001285601.1 | NC_009541_p25 | 10.1 kDa hypothetical protein | phrog_1947 | unknown function | unknown function | -1 | 17641 | 17916 |
| YP_001285604.1 | NC_009541_p28 | 7.1 kDa hypothetical protein | phrog_1923 | unknown function | unknown function | -1 | 19312 | 19506 |
| YP_001285622.1 | NC_009541_p46 | 5.3 kDa hypothetical protein | phrog_8276 | unknown function | unknown function | 1 | 28878 | 29033 |
| YP_001285596.1 | NC_009541_p20 | similar to Che8 gp32 | phrog_670 | endolysin | lysis | 1 | 15376 | 16236 |
| YP_001285614.1 | NC_009541_p38 | similar to TM4 gp52 | phrog_801 | dATP / dGTP pyrophosphohydrolase | DNA, RNA and nucleotide metabolism | -1 | 24666 | 25025 |
| YP_001285621.1 | NC_009541_p45 | 7.0 kDa hypothetical protein | phrog_26952 | unknown function | unknown function | -1 | 27430 | 27612 |
| YP_001285618.1 | NC_009541_p42 | similar to omega gp151 | phrog_7707 | unknown function | unknown function | -1 | 26206 | 26493 |
| YP_001285597.1 | NC_009541_p21 | similar to Che8 gp34 | phrog_443 | holin | lysis | 1 | 16249 | 16650 |
| YP_001285591.1 | NC_009541_p15 | similar to D29 gp27 | phrog_106 | minor tail protein | tail | 1 | 11315 | 12262 |
| YP_001285593.1 | NC_009541_p17 | 28.9 kDa hypothetical protein | phrog_1910 | lectin | other | 1 | 13444 | 14262 |
| YP_001285616.1 | NC_009541_p40 | 8.4 kDa hypothetical protein | phrog_1884 | unknown function | unknown function | -1 | 25331 | 25558 |
| YP_001285598.1 | NC_009541_p22 | 11.3 kDa hypothetical protein | singleton | unknown function | unknown function | 1 | 16663 | 16959 |
| YP_001285617.1 | NC_009541_p41 | 19.1 kDa hypothetical protein | phrog_1908 | unknown function | unknown function | -1 | 25581 | 26120 |
| YP_001285599.1 | NC_009541_p23 | 8.6 kDa hypothetical protein | phrog_22752 | unknown function | unknown function | 1 | 16984 | 17217 |
| YP_001285594.1 | NC_009541_p18 | 8.8 kDa hypothetical protein | phrog_1958 | minor tail protein | tail | 1 | 14331 | 14570 |
| YP_001285589.1 | NC_009541_p13 | 10.6 kDa hypothetical protein | phrog_3166 | unknown function | unknown function | 1 | 8237 | 8524 |
| YP_001285580.1 | NC_009541_p4 | similar to TM4 gp6 | phrog_193 | head maturation protease | head and packaging | 1 | 3218 | 3973 |
| YP_001285619.1 | NC_009541_p43 | 11.8 kDa hypothetical protein | phrog_919 | unknown function | unknown function | -1 | 26622 | 26933 |
| YP_001285620.1 | NC_009541_p44 | 9.4 kDa hypothetical protein | phrog_25681 | unknown function | unknown function | -1 | 27007 | 27273 |
| YP_001285585.1 | NC_009541_p9 | 10.2 kDa hypothetical protein | phrog_387 | neck protein | connector | 1 | 6455 | 6745 |
| YP_001285624.1 | NC_009541_p48 | similar to TM4 gp92 | phrog_338 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 29388 | 29690 |
| YP_001285603.1 | NC_009541_p27 | similar to TM4 gp 36 | phrog_284 | exonuclease | DNA, RNA and nucleotide metabolism | -1 | 18269 | 19315 |