Genomic map of Phormidium phage Pf-WMP3 (NC_009551)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_009551
Definition
Phormidium phage Pf-WMP3, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Podoviridae.
DB of origin
REFSEQ
Length
43249
Host Name
Leptolyngbya foveolarum
Host domain
Bacteria
Is prophage?
undef
Number of proteins
41
%GC
46.47
Number of singletons
7
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_001285799.1 NC_009551_p34 portal protein phrog_332 head-tail adaptor connector -1 36357 38312
YP_001285789.1 NC_009551_p24 variable tail fiber protein phrog_22682 tail fiber protein tail -1 16425 17627
YP_001285806.1 NC_009551_p41 PfWMP3_41 singleton unknown function unknown function 1 42497 42988
YP_001285803.1 NC_009551_p38 PfWMP3_38 phrog_37501 unknown function unknown function -1 41022 41507
YP_001285773.1 NC_009551_p8 PfWMP3_08 phrog_29046 unknown function unknown function 1 5269 6528
YP_001285796.1 NC_009551_p31 tail tubular protein A phrog_10775 tail protein tail -1 33404 34069
YP_001285777.1 NC_009551_p12 DNA polymerase singleton unknown function unknown function 1 9191 10282
YP_001285794.1 NC_009551_p29 PfWMP3_29 singleton unknown function unknown function -1 29930 30313
YP_001285779.1 NC_009551_p14 DNA polymerase singleton unknown function unknown function 1 11069 11731
YP_001285788.1 NC_009551_p23 PfWMP3_23 phrog_1990 Cas4-domain exonuclease DNA, RNA and nucleotide metabolism 1 15501 16361
YP_001285776.1 NC_009551_p11 PfWMP3_11 phrog_37438 unknown function unknown function 1 8981 9187
YP_001285800.1 NC_009551_p35 PfWMP3_35 phrog_2633 endonuclease VII DNA, RNA and nucleotide metabolism -1 38309 38689
YP_001285767.1 NC_009551_p2 PfWMP3_02 phrog_37788 unknown function unknown function 1 773 1249
YP_001285786.1 NC_009551_p21 PfWMP3_21 singleton unknown function unknown function 1 14926 15036
YP_001285797.1 NC_009551_p32 capsid protein phrog_267 major head protein head and packaging -1 34501 35646
YP_001285781.1 NC_009551_p16 PfWMP3_16 phrog_32411 unknown function unknown function 1 12061 12300
YP_001285793.1 NC_009551_p28 PfWMP3_28 phrog_35077 unknown function unknown function -1 28735 29892
YP_001285780.1 NC_009551_p15 PfWMP3_15 phrog_28195 unknown function unknown function 1 11713 11868
YP_001285805.1 NC_009551_p40 PfWMP3_40 phrog_32491 unknown function unknown function -1 41808 42059
YP_001285790.1 NC_009551_p25 PfWMP3_25 phrog_19395 tail fiber protein; host specificity tail -1 17614 21075
YP_001285766.1 NC_009551_p1 PfWMP3_01 singleton unknown function unknown function 1 233 685
YP_001285795.1 NC_009551_p30 tail tubular protein B phrog_21185 tail protein tail -1 30317 33400
YP_001285791.1 NC_009551_p26 PfWMP3_26 phrog_33290 ParB-like partition nuclease DNA, RNA and nucleotide metabolism -1 21214 25701
YP_001285774.1 NC_009551_p9 DNA primase/helicase phrog_239 DNA primase/helicase DNA, RNA and nucleotide metabolism 1 6659 8707
YP_001285778.1 NC_009551_p13 probable HNH-type endonuclease phrog_7545 HNH endonuclease DNA, RNA and nucleotide metabolism 1 10379 10864
YP_001285785.1 NC_009551_p20 phage associated recombination protein phrog_2324 Erf-like ssDNA annealing protein DNA, RNA and nucleotide metabolism 1 14304 14765
YP_001285770.1 NC_009551_p5 PfWMP3_05 phrog_36294 unknown function unknown function 1 3184 3729
YP_001285802.1 NC_009551_p37 PfWMP3_37 phrog_37152 unknown function unknown function -1 40516 41016
YP_001285772.1 NC_009551_p7 PfWMP3_07 phrog_37564 unknown function unknown function 1 4516 5025
YP_001285792.1 NC_009551_p27 PfWMP3_27 phrog_21656 peptidase other -1 25749 28733
YP_001285775.1 NC_009551_p10 PfWMP3_10 phrog_35193 unknown function unknown function 1 8768 8968
YP_001285798.1 NC_009551_p33 scaffold protein phrog_19777 head scaffolding protein head and packaging -1 35669 36352
YP_001285782.1 NC_009551_p17 PfWMP3_17 phrog_31336 unknown function unknown function 1 12316 13395
YP_001285771.1 NC_009551_p6 PfWMP3_06 phrog_36145 unknown function unknown function 1 3848 4516
YP_001285768.1 NC_009551_p3 PfWMP3_03 phrog_33605 unknown function unknown function 1 1451 1654
YP_001285804.1 NC_009551_p39 PfWMP3_39 phrog_29870 unknown function unknown function -1 41528 41782
YP_001285787.1 NC_009551_p22 PfWMP3_22 phrog_38676 unknown function unknown function 1 15050 15337
YP_001285769.1 NC_009551_p4 PfWMP3_04 phrog_33146 unknown function unknown function 1 1855 3153
YP_001285784.1 NC_009551_p19 PfWMP3_19 phrog_33364 unknown function unknown function 1 14052 14300
YP_001285783.1 NC_009551_p18 PfWMP3_18 singleton unknown function unknown function 1 13819 14055
YP_001285801.1 NC_009551_p36 terminase phrog_38 terminase large subunit head and packaging -1 38713 40410