| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_009551 |
Definition |
Phormidium phage Pf-WMP3, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Podoviridae. |
DB of origin |
REFSEQ |
Length |
43249 |
Host Name |
Leptolyngbya foveolarum |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
41 |
%GC |
46.47 |
Number of singletons |
7 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_001285799.1 | NC_009551_p34 | portal protein | phrog_332 | head-tail adaptor | connector | -1 | 36357 | 38312 |
| YP_001285789.1 | NC_009551_p24 | variable tail fiber protein | phrog_22682 | tail fiber protein | tail | -1 | 16425 | 17627 |
| YP_001285806.1 | NC_009551_p41 | PfWMP3_41 | singleton | unknown function | unknown function | 1 | 42497 | 42988 |
| YP_001285803.1 | NC_009551_p38 | PfWMP3_38 | phrog_37501 | unknown function | unknown function | -1 | 41022 | 41507 |
| YP_001285773.1 | NC_009551_p8 | PfWMP3_08 | phrog_29046 | unknown function | unknown function | 1 | 5269 | 6528 |
| YP_001285796.1 | NC_009551_p31 | tail tubular protein A | phrog_10775 | tail protein | tail | -1 | 33404 | 34069 |
| YP_001285777.1 | NC_009551_p12 | DNA polymerase | singleton | unknown function | unknown function | 1 | 9191 | 10282 |
| YP_001285794.1 | NC_009551_p29 | PfWMP3_29 | singleton | unknown function | unknown function | -1 | 29930 | 30313 |
| YP_001285779.1 | NC_009551_p14 | DNA polymerase | singleton | unknown function | unknown function | 1 | 11069 | 11731 |
| YP_001285788.1 | NC_009551_p23 | PfWMP3_23 | phrog_1990 | Cas4-domain exonuclease | DNA, RNA and nucleotide metabolism | 1 | 15501 | 16361 |
| YP_001285776.1 | NC_009551_p11 | PfWMP3_11 | phrog_37438 | unknown function | unknown function | 1 | 8981 | 9187 |
| YP_001285800.1 | NC_009551_p35 | PfWMP3_35 | phrog_2633 | endonuclease VII | DNA, RNA and nucleotide metabolism | -1 | 38309 | 38689 |
| YP_001285767.1 | NC_009551_p2 | PfWMP3_02 | phrog_37788 | unknown function | unknown function | 1 | 773 | 1249 |
| YP_001285786.1 | NC_009551_p21 | PfWMP3_21 | singleton | unknown function | unknown function | 1 | 14926 | 15036 |
| YP_001285797.1 | NC_009551_p32 | capsid protein | phrog_267 | major head protein | head and packaging | -1 | 34501 | 35646 |
| YP_001285781.1 | NC_009551_p16 | PfWMP3_16 | phrog_32411 | unknown function | unknown function | 1 | 12061 | 12300 |
| YP_001285793.1 | NC_009551_p28 | PfWMP3_28 | phrog_35077 | unknown function | unknown function | -1 | 28735 | 29892 |
| YP_001285780.1 | NC_009551_p15 | PfWMP3_15 | phrog_28195 | unknown function | unknown function | 1 | 11713 | 11868 |
| YP_001285805.1 | NC_009551_p40 | PfWMP3_40 | phrog_32491 | unknown function | unknown function | -1 | 41808 | 42059 |
| YP_001285790.1 | NC_009551_p25 | PfWMP3_25 | phrog_19395 | tail fiber protein; host specificity | tail | -1 | 17614 | 21075 |
| YP_001285766.1 | NC_009551_p1 | PfWMP3_01 | singleton | unknown function | unknown function | 1 | 233 | 685 |
| YP_001285795.1 | NC_009551_p30 | tail tubular protein B | phrog_21185 | tail protein | tail | -1 | 30317 | 33400 |
| YP_001285791.1 | NC_009551_p26 | PfWMP3_26 | phrog_33290 | ParB-like partition nuclease | DNA, RNA and nucleotide metabolism | -1 | 21214 | 25701 |
| YP_001285774.1 | NC_009551_p9 | DNA primase/helicase | phrog_239 | DNA primase/helicase | DNA, RNA and nucleotide metabolism | 1 | 6659 | 8707 |
| YP_001285778.1 | NC_009551_p13 | probable HNH-type endonuclease | phrog_7545 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 10379 | 10864 |
| YP_001285785.1 | NC_009551_p20 | phage associated recombination protein | phrog_2324 | Erf-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 14304 | 14765 |
| YP_001285770.1 | NC_009551_p5 | PfWMP3_05 | phrog_36294 | unknown function | unknown function | 1 | 3184 | 3729 |
| YP_001285802.1 | NC_009551_p37 | PfWMP3_37 | phrog_37152 | unknown function | unknown function | -1 | 40516 | 41016 |
| YP_001285772.1 | NC_009551_p7 | PfWMP3_07 | phrog_37564 | unknown function | unknown function | 1 | 4516 | 5025 |
| YP_001285792.1 | NC_009551_p27 | PfWMP3_27 | phrog_21656 | peptidase | other | -1 | 25749 | 28733 |
| YP_001285775.1 | NC_009551_p10 | PfWMP3_10 | phrog_35193 | unknown function | unknown function | 1 | 8768 | 8968 |
| YP_001285798.1 | NC_009551_p33 | scaffold protein | phrog_19777 | head scaffolding protein | head and packaging | -1 | 35669 | 36352 |
| YP_001285782.1 | NC_009551_p17 | PfWMP3_17 | phrog_31336 | unknown function | unknown function | 1 | 12316 | 13395 |
| YP_001285771.1 | NC_009551_p6 | PfWMP3_06 | phrog_36145 | unknown function | unknown function | 1 | 3848 | 4516 |
| YP_001285768.1 | NC_009551_p3 | PfWMP3_03 | phrog_33605 | unknown function | unknown function | 1 | 1451 | 1654 |
| YP_001285804.1 | NC_009551_p39 | PfWMP3_39 | phrog_29870 | unknown function | unknown function | -1 | 41528 | 41782 |
| YP_001285787.1 | NC_009551_p22 | PfWMP3_22 | phrog_38676 | unknown function | unknown function | 1 | 15050 | 15337 |
| YP_001285769.1 | NC_009551_p4 | PfWMP3_04 | phrog_33146 | unknown function | unknown function | 1 | 1855 | 3153 |
| YP_001285784.1 | NC_009551_p19 | PfWMP3_19 | phrog_33364 | unknown function | unknown function | 1 | 14052 | 14300 |
| YP_001285783.1 | NC_009551_p18 | PfWMP3_18 | singleton | unknown function | unknown function | 1 | 13819 | 14055 |
| YP_001285801.1 | NC_009551_p36 | terminase | phrog_38 | terminase large subunit | head and packaging | -1 | 38713 | 40410 |