| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_009813 |
Definition |
Listeria phage B054, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae. |
DB of origin |
REFSEQ |
Length |
48172 |
Host Name |
Listeria monocytogenes |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
80 |
%GC |
36.21 |
Number of singletons |
5 |
Number of paralogs |
2 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_001468722.1 | NC_009813_p18 | tape measure protein | phrog_167 | tail length tape measure protein | tail | 1 | 12057 | 16772 |
| YP_001468716.1 | NC_009813_p12 | hypothetical protein | phrog_1661 | unknown function | unknown function | 1 | 9204 | 9578 |
| YP_001468741.1 | NC_009813_p37 | hypothetical protein | singleton | unknown function | unknown function | -1 | 25646 | 25912 |
| YP_001468724.1 | NC_009813_p20 | hypothetical protein | phrog_1264 | unknown function | unknown function | 1 | 17341 | 17706 |
| YP_001468737.1 | NC_009813_p33 | endolysin | phrog_489 | endolysin | lysis | 1 | 23638 | 24603 |
| YP_001468766.1 | NC_009813_p62 | hypothetical protein | phrog_7484 | unknown function | unknown function | 1 | 39214 | 40575 |
| YP_001468762.1 | NC_009813_p58 | hypothetical protein | phrog_5403 | unknown function | unknown function | 1 | 37606 | 38226 |
| YP_001468727.1 | NC_009813_p23 | hypothetical protein | phrog_120 | baseplate wedge subunit | tail | 1 | 18848 | 19210 |
| YP_001468715.1 | NC_009813_p11 | hypothetical protein | phrog_222 | tail completion or Neck1 protein | connector | 1 | 8605 | 9204 |
| YP_001468725.1 | NC_009813_p21 | hypothetical protein | phrog_196 | baseplate hub | tail | 1 | 17706 | 18512 |
| YP_001468709.1 | NC_009813_p5 | hypothetical protein | phrog_36451 | unknown function | unknown function | 1 | 5146 | 5316 |
| YP_001468751.1 | NC_009813_p47 | hypothetical protein | phrog_35940 | unknown function | unknown function | 1 | 30906 | 31133 |
| YP_001468769.1 | NC_009813_p65 | hypothetical protein | phrog_323 | transcriptional regulator, D5-like | transcription regulation | 1 | 41769 | 42449 |
| YP_001468774.1 | NC_009813_p70 | hypothetical protein | phrog_398 | unknown function | unknown function | 1 | 43296 | 43856 |
| YP_001468763.1 | NC_009813_p59 | hypothetical protein | phrog_36543 | unknown function | unknown function | 1 | 38267 | 38647 |
| YP_001468773.1 | NC_009813_p69 | hypothetical protein | phrog_986 | RNA-binding protein | DNA, RNA and nucleotide metabolism | 1 | 43033 | 43284 |
| YP_001468726.1 | NC_009813_p22 | hypothetical protein | phrog_11 | baseplate spike | tail | 1 | 18513 | 18851 |
| YP_001468714.1 | NC_009813_p10 | hypothetical protein | phrog_302 | virion structural protein | head and packaging | 1 | 8270 | 8605 |
| YP_001468748.1 | NC_009813_p44 | hypothetical protein | phrog_668 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 29826 | 30119 |
| YP_001468732.1 | NC_009813_p28 | hypothetical protein | phrog_1382 | unknown function | unknown function | 1 | 22113 | 22238 |
| YP_001468753.1 | NC_009813_p49 | hypothetical protein | phrog_77 | SbcC-like subunit of palindrome specific endonuclease | DNA, RNA and nucleotide metabolism | 1 | 31479 | 33422 |
| YP_001468778.1 | NC_009813_p74 | hypothetical protein | phrog_10400 | unknown function | unknown function | 1 | 45270 | 45386 |
| YP_001468719.1 | NC_009813_p15 | hypothetical protein | phrog_280 | virion structural protein | head and packaging | 1 | 11073 | 11471 |
| YP_001468743.1 | NC_009813_p39 | hypothetical protein | phrog_37056 | unknown function | unknown function | -1 | 27560 | 27952 |
| YP_001468768.1 | NC_009813_p64 | hypothetical protein | phrog_1 | integrase | integration and excision | 1 | 40812 | 41756 |
| YP_001468707.1 | NC_009813_p3 | structural protein | phrog_146 | portal protein | head and packaging | 1 | 2362 | 3747 |
| YP_001468776.1 | NC_009813_p72 | hypothetical protein | phrog_63 | anti-repressor Ant | transcription regulation | 1 | 44372 | 45139 |
| YP_001468757.1 | NC_009813_p53 | hypothetical protein | phrog_50 | DnaC-like helicase loader | DNA, RNA and nucleotide metabolism | 1 | 35758 | 36573 |
| YP_001468738.1 | NC_009813_p34 | hypothetical protein | phrog_3 | transcriptional repressor | transcription regulation | -1 | 24666 | 24887 |
| YP_001468767.1 | NC_009813_p63 | hypothetical protein | singleton | unknown function | unknown function | 1 | 40588 | 40812 |
| YP_001468759.1 | NC_009813_p55 | hypothetical protein | phrog_37289 | unknown function | unknown function | 1 | 36751 | 36957 |
| YP_001468761.1 | NC_009813_p57 | hypothetical protein | phrog_140 | RusA-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 37148 | 37585 |
| YP_001468729.1 | NC_009813_p25 | hypothetical protein | phrog_1160 | baseplate protein | tail | 1 | 20344 | 20985 |
| YP_001468781.1 | NC_009813_p77 | hypothetical protein | phrog_498 | DNA methyltransferase | other | 1 | 45957 | 47294 |
| YP_001468708.1 | NC_009813_p4 | hypothetical protein | phrog_4529 | minor head protein and DNA pilot | head and packaging | 1 | 3740 | 5149 |
| YP_001468777.1 | NC_009813_p73 | hypothetical protein | singleton | unknown function | unknown function | 1 | 45087 | 45257 |
| YP_001468749.1 | NC_009813_p45 | hypothetical protein | phrog_35221 | unknown function | unknown function | 1 | 30124 | 30288 |
| YP_001468718.1 | NC_009813_p14 | structural protein | phrog_205 | tail sheath | tail | 1 | 10061 | 11056 |
| YP_001468706.1 | NC_009813_p2 | terminase large subunit | phrog_38 | terminase large subunit | head and packaging | 1 | 888 | 2348 |
| YP_001468710.1 | NC_009813_p6 | hypothetical protein | phrog_530 | head maturation protease | head and packaging | 1 | 5365 | 6474 |
| YP_001468711.1 | NC_009813_p7 | structural protein | phrog_563 | virion structural protein | head and packaging | 1 | 6474 | 6923 |
| YP_001468739.1 | NC_009813_p35 | hypothetical protein | phrog_14056 | unknown function | unknown function | -1 | 24915 | 25118 |
| YP_001468744.1 | NC_009813_p40 | hypothetical protein | phrog_87 | metallo-protease | other | -1 | 28000 | 28419 |
| YP_001468736.1 | NC_009813_p32 | holin | phrog_297 | holin | lysis | 1 | 23381 | 23638 |
| YP_001468746.1 | NC_009813_p42 | hypothetical protein | phrog_3 | transcriptional repressor | transcription regulation | 1 | 29025 | 29210 |
| YP_001468740.1 | NC_009813_p36 | hypothetical protein | phrog_33216 | unknown function | unknown function | -1 | 25132 | 25506 |
| YP_001468784.1 | NC_009813_p80 | hypothetical protein | phrog_4960 | unknown function | unknown function | 1 | 47928 | 48152 |
| YP_001468728.1 | NC_009813_p24 | hypothetical protein | phrog_6 | baseplate wedge subunit | tail | 1 | 19203 | 20354 |
| YP_001468747.1 | NC_009813_p43 | hypothetical protein | phrog_1124 | transcriptional regulator | transcription regulation | 1 | 29287 | 29811 |
| YP_001468779.1 | NC_009813_p75 | hypothetical protein | singleton | unknown function | unknown function | 1 | 45576 | 45710 |
| YP_001468712.1 | NC_009813_p8 | structural protein | phrog_264 | major head protein | head and packaging | 1 | 6944 | 7849 |
| YP_001468750.1 | NC_009813_p46 | hypothetical protein | phrog_33992 | unknown function | unknown function | 1 | 30438 | 30728 |
| YP_001468720.1 | NC_009813_p16 | hypothetical protein | phrog_1778 | unknown function | unknown function | 1 | 11524 | 11880 |
| YP_001468764.1 | NC_009813_p60 | hypothetical protein | phrog_32887 | unknown function | unknown function | 1 | 38607 | 38783 |
| YP_001468775.1 | NC_009813_p71 | hypothetical protein | phrog_248 | transcriptional activator | transcription regulation | 1 | 43937 | 44359 |
| YP_001468713.1 | NC_009813_p9 | hypothetical protein | phrog_1983 | unknown function | unknown function | 1 | 7872 | 8258 |
| YP_001468733.1 | NC_009813_p29 | hypothetical protein | phrog_2968 | tail protein | tail | 1 | 22268 | 22714 |
| YP_001468730.1 | NC_009813_p26 | hypothetical protein | phrog_35034 | unknown function | unknown function | 1 | 21006 | 21734 |
| YP_001468765.1 | NC_009813_p61 | hypothetical protein | phrog_7445 | unknown function | unknown function | 1 | 38795 | 39217 |
| YP_001468782.1 | NC_009813_p78 | hypothetical protein | phrog_10302 | unknown function | unknown function | 1 | 47342 | 47539 |
| YP_001468717.1 | NC_009813_p13 | hypothetical protein | phrog_1232 | tail terminator | connector | 1 | 9568 | 10056 |
| YP_001468705.1 | NC_009813_p1 | small terminase | phrog_1889 | terminase small subunit | head and packaging | 1 | 26 | 910 |
| YP_001468783.1 | NC_009813_p79 | hypothetical protein | phrog_1476 | unknown function | unknown function | 1 | 47670 | 47900 |
| YP_001468771.1 | NC_009813_p67 | hypothetical protein | phrog_6739 | unknown function | unknown function | 1 | 42757 | 42897 |
| YP_001468735.1 | NC_009813_p31 | hypothetical protein | singleton | unknown function | unknown function | 1 | 23155 | 23370 |
| YP_001468721.1 | NC_009813_p17 | hypothetical protein | phrog_1995 | unknown function | unknown function | 1 | 11843 | 12055 |
| YP_001468758.1 | NC_009813_p54 | hypothetical protein | phrog_20889 | unknown function | unknown function | 1 | 36570 | 36764 |
| YP_001468755.1 | NC_009813_p51 | hypothetical protein | phrog_392 | metal-dependent hydrolase | other | 1 | 34168 | 34905 |
| YP_001468754.1 | NC_009813_p50 | hypothetical protein | phrog_252 | Bet-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 33423 | 34208 |
| YP_001468723.1 | NC_009813_p19 | hypothetical protein | phrog_1517 | endolysin | lysis | 1 | 16778 | 17341 |
| YP_001468770.1 | NC_009813_p66 | hypothetical protein | phrog_3930 | unknown function | unknown function | 1 | 42446 | 42739 |
| YP_001468760.1 | NC_009813_p56 | hypothetical protein | phrog_33309 | unknown function | unknown function | 1 | 36958 | 37167 |
| YP_001468772.1 | NC_009813_p68 | hypothetical protein | phrog_4292 | unknown function | unknown function | 1 | 42884 | 43036 |
| YP_001468731.1 | NC_009813_p27 | hypothetical protein | phrog_35186 | unknown function | unknown function | 1 | 21740 | 22081 |
| YP_001468742.1 | NC_009813_p38 | hypothetical protein | phrog_1 | integrase | integration and excision | -1 | 26288 | 27463 |
| YP_001468756.1 | NC_009813_p52 | hypothetical protein | phrog_2562 | replication initiation protein | DNA, RNA and nucleotide metabolism | 1 | 34917 | 35834 |
| YP_001468734.1 | NC_009813_p30 | hypothetical protein | phrog_2990 | unknown function | unknown function | 1 | 22690 | 23136 |
| YP_001468780.1 | NC_009813_p76 | hypothetical protein | phrog_32566 | unknown function | unknown function | 1 | 45667 | 45960 |
| YP_001468752.1 | NC_009813_p48 | hypothetical protein | phrog_34236 | unknown function | unknown function | 1 | 31151 | 31492 |
| YP_001468745.1 | NC_009813_p41 | hypothetical protein | phrog_8 | transcriptional regulator | transcription regulation | -1 | 28436 | 28864 |