| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_009814 |
Definition |
Listeria phage P35, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae. |
DB of origin |
REFSEQ |
Length |
35822 |
Host Name |
Listeria monocytogenes |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
56 |
%GC |
40.81 |
Number of singletons |
21 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_001468802.1 | NC_009814_p18 | holin | phrog_199 | holin | lysis | 1 | 15427 | 15876 |
| YP_001468819.1 | NC_009814_p35 | hypothetical protein | phrog_3 | transcriptional repressor | transcription regulation | 1 | 27102 | 27341 |
| YP_001468823.1 | NC_009814_p39 | hypothetical protein | phrog_7738 | unknown function | unknown function | 1 | 28784 | 29215 |
| YP_001468836.1 | NC_009814_p52 | hypothetical protein | phrog_38720 | unknown function | unknown function | 1 | 33357 | 33548 |
| YP_001468812.1 | NC_009814_p28 | endolysin | phrog_15351 | endolysin | lysis | 1 | 19450 | 20325 |
| YP_001468808.1 | NC_009814_p24 | hypothetical protein | singleton | unknown function | unknown function | 1 | 18218 | 18460 |
| YP_001468793.1 | NC_009814_p9 | hypothetical protein | phrog_5 | tail completion or Neck1 protein | connector | 1 | 7409 | 7834 |
| YP_001468794.1 | NC_009814_p10 | hypothetical protein | phrog_957 | head protein | head and packaging | 1 | 7834 | 8298 |
| YP_001468811.1 | NC_009814_p27 | hypothetical protein | singleton | unknown function | unknown function | 1 | 19272 | 19433 |
| YP_001468839.1 | NC_009814_p55 | hypothetical protein | singleton | unknown function | unknown function | 1 | 34677 | 35090 |
| YP_001468791.1 | NC_009814_p7 | hypothetical protein | phrog_1236 | head protein | head and packaging | 1 | 6518 | 7054 |
| YP_001468810.1 | NC_009814_p26 | hypothetical protein | singleton | unknown function | unknown function | 1 | 19103 | 19261 |
| YP_001468822.1 | NC_009814_p38 | hypothetical protein | phrog_4897 | kinase | other | 1 | 28203 | 28787 |
| YP_001468837.1 | NC_009814_p53 | hypothetical protein | phrog_4400 | unknown function | unknown function | 1 | 33550 | 34179 |
| YP_001468831.1 | NC_009814_p47 | hypothetical protein | phrog_1494 | unknown function | unknown function | 1 | 31617 | 31799 |
| YP_001468814.1 | NC_009814_p30 | hypothetical protein | phrog_392 | metal-dependent hydrolase | other | 1 | 20884 | 21456 |
| YP_001468828.1 | NC_009814_p44 | hypothetical protein | singleton | unknown function | unknown function | 1 | 30647 | 31012 |
| YP_001468832.1 | NC_009814_p48 | hypothetical protein | singleton | unknown function | unknown function | 1 | 31908 | 32012 |
| YP_001468792.1 | NC_009814_p8 | hypothetical protein | phrog_1059 | head-tail adaptor | connector | 1 | 7054 | 7407 |
| YP_001468817.1 | NC_009814_p33 | hypothetical protein | phrog_1252 | DNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 23285 | 25192 |
| YP_001468826.1 | NC_009814_p42 | hypothetical protein | singleton | unknown function | unknown function | 1 | 29957 | 30172 |
| YP_001468807.1 | NC_009814_p23 | hypothetical protein | singleton | unknown function | unknown function | 1 | 17448 | 18221 |
| YP_001468813.1 | NC_009814_p29 | hypothetical protein | singleton | unknown function | unknown function | 1 | 20439 | 20834 |
| YP_001468806.1 | NC_009814_p22 | hypothetical protein | singleton | unknown function | unknown function | 1 | 17119 | 17448 |
| YP_001468821.1 | NC_009814_p37 | hypothetical protein | phrog_25554 | unknown function | unknown function | 1 | 27649 | 28203 |
| YP_001468790.1 | NC_009814_p6 | major capsid protein | phrog_422 | major head protein | head and packaging | 1 | 5543 | 6451 |
| YP_001468834.1 | NC_009814_p50 | hypothetical protein | singleton | unknown function | unknown function | 1 | 32298 | 32465 |
| YP_001468827.1 | NC_009814_p43 | hypothetical protein | singleton | unknown function | unknown function | 1 | 30183 | 30644 |
| YP_001468820.1 | NC_009814_p36 | hypothetical protein | phrog_14860 | unknown function | unknown function | 1 | 27437 | 27652 |
| YP_001468799.1 | NC_009814_p15 | hypothetical protein | phrog_13564 | minor tail protein | tail | 1 | 12036 | 13295 |
| YP_001468830.1 | NC_009814_p46 | hypothetical protein | singleton | unknown function | unknown function | 1 | 31316 | 31624 |
| YP_001468805.1 | NC_009814_p21 | hypothetical protein | singleton | unknown function | unknown function | 1 | 16905 | 17117 |
| YP_001468787.1 | NC_009814_p3 | portal protein | phrog_64 | portal protein | head and packaging | 1 | 2008 | 3621 |
| YP_001468797.1 | NC_009814_p13 | hypothetical protein | phrog_1294 | peptide methionine sulfoxide reductase | other | 1 | 9875 | 10147 |
| YP_001468818.1 | NC_009814_p34 | hypothetical protein | phrog_864 | DNA primase | DNA, RNA and nucleotide metabolism | 1 | 25205 | 27109 |
| YP_001468815.1 | NC_009814_p31 | hypothetical protein | phrog_674 | unknown function | unknown function | 1 | 21497 | 22243 |
| YP_001468804.1 | NC_009814_p20 | hypothetical protein | singleton | unknown function | unknown function | 1 | 16660 | 16905 |
| YP_001468786.1 | NC_009814_p2 | terminase large subunit | phrog_2 | terminase large subunit | head and packaging | 1 | 637 | 1959 |
| YP_001468840.1 | NC_009814_p56 | hypothetical protein | singleton | unknown function | unknown function | 1 | 35063 | 35326 |
| YP_001468795.1 | NC_009814_p11 | hypothetical protein | phrog_885 | major tail protein | tail | 1 | 8299 | 9279 |
| YP_001468824.1 | NC_009814_p40 | hypothetical protein | singleton | unknown function | unknown function | 1 | 29290 | 29490 |
| YP_001468798.1 | NC_009814_p14 | tail protein | phrog_58 | tail length tape measure protein | tail | 1 | 10153 | 12039 |
| YP_001468816.1 | NC_009814_p32 | hypothetical protein | phrog_6479 | unknown function | unknown function | 1 | 22263 | 22958 |
| YP_001468788.1 | NC_009814_p4 | minor head protein | phrog_115 | minor head protein | head and packaging | 1 | 3872 | 4780 |
| YP_001468801.1 | NC_009814_p17 | hypothetical protein | phrog_6779 | tail protein | tail | 1 | 14459 | 15295 |
| YP_001468833.1 | NC_009814_p49 | hypothetical protein | singleton | unknown function | unknown function | 1 | 32009 | 32320 |
| YP_001468803.1 | NC_009814_p19 | hypothetical protein | phrog_35662 | unknown function | unknown function | 1 | 16299 | 16544 |
| YP_001468825.1 | NC_009814_p41 | hypothetical protein | phrog_34622 | unknown function | unknown function | 1 | 29487 | 29957 |
| YP_001468829.1 | NC_009814_p45 | hypothetical protein | phrog_715 | MazG-like pyrophosphatase | other | 1 | 31005 | 31319 |
| YP_001468809.1 | NC_009814_p25 | hypothetical protein | phrog_59 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 18444 | 19067 |
| YP_001468838.1 | NC_009814_p54 | hypothetical protein | singleton | unknown function | unknown function | 1 | 34270 | 34674 |
| YP_001468785.1 | NC_009814_p1 | hypothetical protein | singleton | unknown function | unknown function | 1 | 29 | 649 |
| YP_001468800.1 | NC_009814_p16 | hypothetical protein | phrog_7064 | tail protein | tail | 1 | 13288 | 14451 |
| YP_001468835.1 | NC_009814_p51 | hypothetical protein | singleton | unknown function | unknown function | 1 | 32449 | 33357 |
| YP_001468796.1 | NC_009814_p12 | hypothetical protein | phrog_1021 | unknown function | unknown function | 1 | 9363 | 9821 |
| YP_001468789.1 | NC_009814_p5 | scaffold protein | phrog_194 | head scaffolding protein | head and packaging | 1 | 4918 | 5499 |