Genomic map of Listeria phage A006 (NC_009815)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_009815
Definition
Listeria phage A006, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae.
DB of origin
REFSEQ
Length
38124
Host Name
Listeria monocytogenes
Host domain
Bacteria
Is prophage?
undef
Number of proteins
62
%GC
35.49
Number of singletons
4
Number of paralogs
1

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_001468893.1 NC_009815_p53 SSB protein phrog_44 single strand DNA binding protein DNA, RNA and nucleotide metabolism 1 34918 35400
YP_001468865.1 NC_009815_p25 hypothetical protein phrog_13861 unknown function unknown function -1 21535 21768
YP_001468847.1 NC_009815_p7 hypothetical protein singleton unknown function unknown function 1 6255 6392
YP_001468849.1 NC_009815_p9 hypothetical protein phrog_7907 unknown function unknown function 1 6777 7142
YP_001468862.1 NC_009815_p22 hypothetical protein phrog_374 HNH endonuclease DNA, RNA and nucleotide metabolism -1 20280 20777
YP_001468896.1 NC_009815_p56 hypothetical protein phrog_1682 RusA-like Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 35840 36244
YP_001468881.1 NC_009815_p41 hypothetical protein phrog_434 RecE-like recombination exonuclease DNA, RNA and nucleotide metabolism 1 29109 30068
YP_001468860.1 NC_009815_p20 hypothetical protein phrog_5115 ferredoxin moron, auxiliary metabolic gene and host takeover 1 18484 19191
YP_001468901.1 NC_009815_p61 hypothetical protein singleton unknown function unknown function 1 37172 37804
YP_001468891.1 NC_009815_p51 hypothetical protein phrog_35774 unknown function unknown function 1 34192 34284
YP_001468869.1 NC_009815_p29 hypothetical protein singleton unknown function unknown function -1 23974 24483
YP_001468843.1 NC_009815_p3 hypothetical protein phrog_533 portal protein head and packaging 1 2095 3651
YP_001468846.1 NC_009815_p6 major head protein phrog_422 major head protein head and packaging 1 5369 6241
YP_001468882.1 NC_009815_p42 recombinase phrog_148 RecT-like ssDNA annealing protein DNA, RNA and nucleotide metabolism 1 30068 30883
YP_001468870.1 NC_009815_p30 hypothetical protein phrog_87 metallo-protease other -1 24510 25001
YP_001468867.1 NC_009815_p27 hypothetical protein phrog_4724 unknown function unknown function 1 22297 22500
YP_001468899.1 NC_009815_p59 hypothetical protein phrog_248 transcriptional activator transcription regulation 1 36556 36990
YP_001468878.1 NC_009815_p38 hypothetical protein phrog_823 unknown function unknown function 1 28341 28577
YP_001468889.1 NC_009815_p49 hypothetical protein phrog_15755 unknown function unknown function 1 33678 34076
YP_001468883.1 NC_009815_p43 hypothetical protein phrog_186 DnaD-like helicase loader DNA, RNA and nucleotide metabolism 1 30903 31835
YP_001468855.1 NC_009815_p15 tape measure protein phrog_1293 tail length tape measure protein tail 1 9308 14107
YP_001468854.1 NC_009815_p14 hypothetical protein phrog_7794 unknown function unknown function 1 9028 9303
YP_001468845.1 NC_009815_p5 hypothetical protein phrog_194 head scaffolding protein head and packaging 1 4792 5346
YP_001468897.1 NC_009815_p57 hypothetical protein phrog_7279 unknown function unknown function 1 36237 36362
YP_001468864.1 NC_009815_p24 hypothetical protein phrog_33959 unknown function unknown function -1 21252 21503
YP_001468871.1 NC_009815_p31 hypothetical protein phrog_8 transcriptional regulator transcription regulation -1 25033 25341
YP_001468861.1 NC_009815_p21 hypothetical protein phrog_11623 unknown function unknown function -1 19232 20020
YP_001468879.1 NC_009815_p39 hypothetical protein phrog_5174 unknown function unknown function 1 28685 28873
YP_001468866.1 NC_009815_p26 hypothetical protein phrog_4945 unknown function unknown function 1 22067 22300
YP_001468852.1 NC_009815_p12 major tail protein phrog_41 major tail protein tail 1 7822 8508
YP_001468888.1 NC_009815_p48 hypothetical protein phrog_4124 unknown function unknown function 1 33472 33681
YP_001468844.1 NC_009815_p4 hypothetical protein phrog_581 minor head protein head and packaging 1 3656 4696
YP_001468877.1 NC_009815_p37 hypothetical protein phrog_1124 transcriptional regulator transcription regulation 1 27810 28334
YP_001468858.1 NC_009815_p18 hypothetical protein phrog_3999 unknown function unknown function 1 17898 18203
YP_001468894.1 NC_009815_p54 hypothetical protein phrog_5229 unknown function unknown function 1 35432 35737
YP_001468895.1 NC_009815_p55 hypothetical protein phrog_19625 unknown function unknown function 1 35734 35874
YP_001468848.1 NC_009815_p8 hypothetical protein phrog_541 head-tail adaptor connector 1 6424 6777
YP_001468887.1 NC_009815_p47 hypothetical protein phrog_18487 unknown function unknown function 1 33074 33475
YP_001468876.1 NC_009815_p36 antirepressor phrog_130 anti-repressor Ant transcription regulation 1 26915 27688
YP_001468856.1 NC_009815_p16 hypothetical protein phrog_202 distal tail protein Dit tail 1 14104 15672
YP_001468890.1 NC_009815_p50 hypothetical protein phrog_38252 unknown function unknown function 1 34082 34192
YP_001468873.1 NC_009815_p33 hypothetical protein phrog_8019 unknown function unknown function 1 25745 25981
YP_001468850.1 NC_009815_p10 hypothetical protein phrog_556 minor head protein head and packaging 1 7132 7449
YP_001468851.1 NC_009815_p11 hypothetical protein phrog_7815 unknown function unknown function 1 7446 7817
YP_001468900.1 NC_009815_p60 hypothetical protein singleton unknown function unknown function 1 37036 37185
YP_001468874.1 NC_009815_p34 hypothetical protein phrog_5996 unknown function unknown function 1 25978 26331
YP_001468853.1 NC_009815_p13 hypothetical protein phrog_7828 unknown function unknown function 1 8564 8995
YP_001468872.1 NC_009815_p32 hypothetical protein phrog_3 transcriptional repressor transcription regulation 1 25490 25741
YP_001468841.1 NC_009815_p1 terminase small subunit phrog_509 terminase small subunit head and packaging 1 28 768
YP_001468857.1 NC_009815_p17 hypothetical protein phrog_12244 unknown function unknown function 1 15685 17847
YP_001468842.1 NC_009815_p2 terminase large subunit phrog_2 terminase large subunit head and packaging 1 761 2080
YP_001468859.1 NC_009815_p19 holin phrog_297 holin lysis 1 18203 18484
YP_001468868.1 NC_009815_p28 integrase phrog_1 integrase integration and excision -1 22780 23910
YP_001468880.1 NC_009815_p40 hypothetical protein phrog_23908 unknown function unknown function 1 28873 28962
YP_001468863.1 NC_009815_p23 hypothetical protein phrog_8 transcriptional regulator transcription regulation -1 20802 21251
YP_001468898.1 NC_009815_p58 hypothetical protein phrog_11352 unknown function unknown function 1 36373 36537
YP_001468902.1 NC_009815_p62 hypothetical protein phrog_7230 unknown function unknown function 1 37885 38112
YP_001468886.1 NC_009815_p46 hypothetical protein phrog_18091 unknown function unknown function 1 32850 32996
YP_001468885.1 NC_009815_p45 hypothetical protein phrog_121 unknown function unknown function 1 32293 32853
YP_001468884.1 NC_009815_p44 methyltransferase phrog_954 DNA methyltransferase other 1 31832 32296
YP_001468875.1 NC_009815_p35 hypothetical protein phrog_35898 unknown function unknown function -1 26309 26851
YP_001468892.1 NC_009815_p52 hypothetical protein phrog_5780 unknown function unknown function 1 34520 34921