| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_009820 |
Definition |
Mycobacterium phage Tweety, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Cheoctovirus. |
DB of origin |
REFSEQ |
Length |
58692 |
Host Name |
Mycobacterium smegmatis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
109 |
%GC |
61.73 |
Number of singletons |
6 |
Number of paralogs |
2 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_001469249.1 | NC_009820_p16 | minor tail protein | phrog_110 | minor tail protein | tail | 1 | 14860 | 16569 |
| YP_001469273.1 | NC_009820_p40 | hypothetical protein | singleton | unknown function | unknown function | -1 | 31391 | 31600 |
| YP_001469283.1 | NC_009820_p50 | hypothetical protein | phrog_2021 | unknown function | unknown function | 1 | 37155 | 37592 |
| YP_001469240.1 | NC_009820_p7 | hypothetical protein | phrog_2377 | head-tail adaptor Ad1 | connector | 1 | 5883 | 6449 |
| YP_001469287.1 | NC_009820_p54 | hypothetical protein | phrog_3416 | unknown function | unknown function | 1 | 38644 | 39768 |
| YP_001469311.1 | NC_009820_p78 | hypothetical protein | phrog_1943 | unknown function | unknown function | 1 | 48767 | 48961 |
| YP_001469244.1 | NC_009820_p11 | major tail subunit | phrog_476 | major tail protein | tail | 1 | 7633 | 8442 |
| YP_001469266.1 | NC_009820_p33 | hypothetical protein | phrog_404 | minor tail protein | tail | 1 | 28981 | 29355 |
| YP_001469316.1 | NC_009820_p83 | hypothetical protein | phrog_722 | unknown function | unknown function | 1 | 50302 | 50490 |
| YP_001469252.1 | NC_009820_p19 | D-ala-D-ala carboxypeptidase | phrog_382 | minor tail protein with lysin activity | tail | 1 | 19985 | 21871 |
| YP_001469320.1 | NC_009820_p87 | hypothetical protein | phrog_1901 | unknown function | unknown function | 1 | 51494 | 51688 |
| YP_001469246.1 | NC_009820_p13 | tail assembly chaperone | phrog_621 | tail assembly chaperone | tail | 1 | 8579 | 9130 |
| YP_001469259.1 | NC_009820_p26 | hypothetical protein | phrog_686 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 25301 | 25492 |
| YP_001469268.1 | NC_009820_p35 | DnaQ-like protein | phrog_403 | DNA polymerase exonuclease subunit | DNA, RNA and nucleotide metabolism | 1 | 29600 | 30421 |
| YP_001469337.1 | NC_009820_p104 | hypothetical protein | phrog_9549 | glycosyltransferase | moron, auxiliary metabolic gene and host takeover | 1 | 56284 | 56958 |
| YP_001469242.1 | NC_009820_p9 | hypothetical protein | phrog_1929 | head-tail connector protein | connector | 1 | 6781 | 7110 |
| YP_001469291.1 | NC_009820_p58 | hypothetical protein | phrog_2096 | unknown function | unknown function | 1 | 40870 | 41370 |
| YP_001469338.1 | NC_009820_p105 | hypothetical protein | phrog_1693 | unknown function | unknown function | 1 | 57039 | 57245 |
| YP_001469324.1 | NC_009820_p91 | hypothetical protein | phrog_5186 | unknown function | unknown function | 1 | 52261 | 52434 |
| YP_001469339.1 | NC_009820_p106 | hypothetical protein | phrog_17935 | unknown function | unknown function | 1 | 57242 | 57367 |
| YP_001469330.1 | NC_009820_p97 | hypothetical protein | singleton | unknown function | unknown function | 1 | 54054 | 54290 |
| YP_001469341.1 | NC_009820_p108 | glycoasyl transferase | phrog_854 | glucosyltransferase | moron, auxiliary metabolic gene and host takeover | 1 | 57599 | 58225 |
| YP_001469265.1 | NC_009820_p32 | hypothetical protein | phrog_443 | holin | lysis | 1 | 28751 | 28984 |
| YP_001469307.1 | NC_009820_p74 | hypothetical protein | phrog_3926 | replication initiation protein | DNA, RNA and nucleotide metabolism | 1 | 47222 | 47596 |
| YP_001469276.1 | NC_009820_p43 | integrase | phrog_1 | integrase | integration and excision | 1 | 32478 | 33767 |
| YP_001469243.1 | NC_009820_p10 | hypothetical protein | phrog_813 | head-tail adaptor | connector | 1 | 7097 | 7504 |
| YP_001469319.1 | NC_009820_p86 | hypothetical protein | phrog_647 | unknown function | unknown function | 1 | 51088 | 51372 |
| YP_001469239.1 | NC_009820_p6 | major capsid subunit | phrog_267 | major head protein | head and packaging | 1 | 5062 | 5883 |
| YP_001469256.1 | NC_009820_p23 | hypothetical protein | phrog_2005 | minor tail protein | tail | 1 | 23415 | 23669 |
| YP_001469315.1 | NC_009820_p82 | hypothetical protein | phrog_647 | unknown function | unknown function | 1 | 50025 | 50309 |
| YP_001469340.1 | NC_009820_p107 | hypothetical protein | phrog_8053 | unknown function | unknown function | 1 | 57393 | 57602 |
| YP_001469279.2 | NC_009820_p46 | HTH DNA binding domain protein | phrog_6267 | transcriptional repressor | transcription regulation | 1 | 35314 | 35556 |
| YP_001469260.1 | NC_009820_p27 | hypothetical protein | phrog_411 | unknown function | unknown function | 1 | 25642 | 25926 |
| YP_001469288.1 | NC_009820_p55 | hypothetical protein | phrog_1849 | unknown function | unknown function | 1 | 39847 | 40128 |
| YP_001469284.1 | NC_009820_p51 | hypothetical protein | phrog_1816 | unknown function | unknown function | 1 | 37589 | 37777 |
| YP_001469255.1 | NC_009820_p22 | hypothetical protein | phrog_240 | head protein | head and packaging | 1 | 23051 | 23392 |
| YP_001469322.1 | NC_009820_p89 | hypothetical protein | phrog_1091 | unknown function | unknown function | 1 | 51948 | 52127 |
| YP_001469305.1 | NC_009820_p72 | hypothetical protein | phrog_116 | DNA methyltransferase | other | 1 | 45824 | 46936 |
| YP_001469247.1 | NC_009820_p14 | tape measure protein | phrog_1942 | tail length tape measure protein | tail | 1 | 9534 | 13064 |
| YP_001469328.1 | NC_009820_p95 | HTH DNA binding domain protein | phrog_2474 | MerR-like transcriptional regulator | transcription regulation | 1 | 53662 | 53886 |
| YP_001469258.1 | NC_009820_p25 | hypothetical protein | phrog_754 | minor tail protein | tail | 1 | 24317 | 25297 |
| YP_001469269.1 | NC_009820_p36 | hypothetical protein | phrog_1791 | unknown function | unknown function | 1 | 30508 | 30729 |
| YP_001469261.1 | NC_009820_p28 | hypothetical protein | phrog_1172 | unknown function | unknown function | 1 | 26076 | 26228 |
| YP_001469267.1 | NC_009820_p34 | hypothetical protein | phrog_2004 | unknown function | unknown function | 1 | 29380 | 29613 |
| YP_001469300.1 | NC_009820_p67 | hypothetical protein | phrog_10510 | unknown function | unknown function | 1 | 44108 | 44341 |
| YP_001469314.1 | NC_009820_p81 | hypothetical protein | phrog_5429 | DNA repair protein | DNA, RNA and nucleotide metabolism | 1 | 49480 | 50028 |
| YP_001469333.1 | NC_009820_p100 | hypothetical protein | phrog_1385 | unknown function | unknown function | 1 | 54797 | 55039 |
| YP_001469236.1 | NC_009820_p3 | portal protein | phrog_104 | portal protein | head and packaging | 1 | 2255 | 3625 |
| YP_001469262.1 | NC_009820_p29 | hypothetical protein | phrog_747 | unknown function | unknown function | 1 | 26263 | 26535 |
| YP_001469298.1 | NC_009820_p65 | hypothetical protein | phrog_740 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 43115 | 43471 |
| YP_001469299.1 | NC_009820_p66 | hypothetical protein | phrog_67 | DNA methyltransferase | other | 1 | 43468 | 44124 |
| YP_001469290.1 | NC_009820_p57 | hypothetical protein | phrog_1333 | unknown function | unknown function | 1 | 40472 | 40873 |
| YP_001469285.1 | NC_009820_p52 | hypothetical protein | phrog_780 | unknown function | unknown function | 1 | 37774 | 38004 |
| YP_001469321.1 | NC_009820_p88 | hypothetical protein | phrog_6625 | unknown function | unknown function | 1 | 51661 | 51951 |
| YP_001469264.1 | NC_009820_p31 | lysin B | phrog_102 | endolysin | lysis | 1 | 27740 | 28741 |
| YP_001469292.1 | NC_009820_p59 | hypothetical protein | phrog_664 | DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 41367 | 41732 |
| YP_001469234.1 | NC_009820_p1 | terminase small subunit | phrog_226 | minor tail protein | tail | 1 | 109 | 564 |
| YP_001469317.1 | NC_009820_p84 | hypothetical protein | phrog_1900 | mobile element MPME | moron, auxiliary metabolic gene and host takeover | 1 | 50560 | 50931 |
| YP_001469271.1 | NC_009820_p38 | hypothetical protein | singleton | unknown function | unknown function | -1 | 30923 | 31063 |
| YP_001469335.1 | NC_009820_p102 | hypothetical protein | phrog_3297 | kinase | other | 1 | 55234 | 55737 |
| YP_001469331.1 | NC_009820_p98 | hypothetical protein | phrog_3813 | unknown function | unknown function | 1 | 54235 | 54402 |
| YP_001469278.1 | NC_009820_p45 | hypothetical protein | phrog_3949 | transcriptional repressor | transcription regulation | -1 | 34564 | 35097 |
| YP_001469329.1 | NC_009820_p96 | hypothetical protein | phrog_1869 | unknown function | unknown function | 1 | 53883 | 54047 |
| YP_001469270.1 | NC_009820_p37 | hypothetical protein | phrog_1839 | unknown function | unknown function | 1 | 30722 | 30814 |
| YP_001469294.1 | NC_009820_p61 | hypothetical protein | phrog_1834 | unknown function | unknown function | 1 | 41884 | 42114 |
| YP_001469235.1 | NC_009820_p2 | terminase large subunit | phrog_9 | terminase large subunit | head and packaging | 1 | 587 | 2224 |
| YP_001469274.1 | NC_009820_p41 | hypothetical protein | phrog_8695 | unknown function | unknown function | -1 | 31640 | 31879 |
| YP_001469275.1 | NC_009820_p42 | hypothetical protein | singleton | unknown function | unknown function | -1 | 31879 | 32046 |
| YP_001469301.1 | NC_009820_p68 | hypothetical protein | phrog_2704 | unknown function | unknown function | 1 | 44341 | 44487 |
| YP_001469253.1 | NC_009820_p20 | hypothetical protein | singleton | unknown function | unknown function | 1 | 21868 | 22116 |
| YP_001469318.1 | NC_009820_p85 | hypothetical protein | phrog_7842 | unknown function | unknown function | 1 | 50918 | 51091 |
| YP_001469248.1 | NC_009820_p15 | minor tail protein | phrog_106 | minor tail protein | tail | 1 | 13065 | 14774 |
| YP_001469241.1 | NC_009820_p8 | hypothetical protein | phrog_763 | head-tail adaptor | connector | 1 | 6446 | 6778 |
| YP_001469310.1 | NC_009820_p77 | hypothetical protein | phrog_14414 | unknown function | unknown function | 1 | 48570 | 48770 |
| YP_001469302.1 | NC_009820_p69 | hypothetical protein | phrog_363 | DNA methyltransferase | other | 1 | 44484 | 45269 |
| YP_001469326.1 | NC_009820_p93 | hypothetical protein | phrog_2247 | unknown function | unknown function | 1 | 52651 | 52914 |
| YP_001469280.1 | NC_009820_p47 | antirepressor | phrog_130 | anti-repressor Ant | transcription regulation | 1 | 35615 | 36619 |
| YP_001469237.1 | NC_009820_p4 | capsid maturation protease | phrog_1522 | head maturation protease | head and packaging | 1 | 3612 | 4367 |
| YP_001469282.1 | NC_009820_p49 | hypothetical protein | phrog_66 | excisionase and transcriptional regulator | integration and excision | 1 | 36917 | 37114 |
| YP_001469295.1 | NC_009820_p62 | hypothetical protein | phrog_11976 | unknown function | unknown function | 1 | 42111 | 42257 |
| YP_001469336.1 | NC_009820_p103 | hypothetical protein | phrog_9361 | methyltransferase | other | 1 | 55743 | 56279 |
| YP_001469312.1 | NC_009820_p79 | hypothetical protein | phrog_1546 | unknown function | unknown function | 1 | 48958 | 49341 |
| YP_001469332.1 | NC_009820_p99 | hypothetical protein | phrog_1186 | unknown function | unknown function | 1 | 54399 | 54800 |
| YP_001469303.1 | NC_009820_p70 | hypothetical protein | phrog_647 | unknown function | unknown function | 1 | 45248 | 45598 |
| YP_001469257.1 | NC_009820_p24 | hypothetical protein | phrog_2012 | minor tail protein | tail | 1 | 23682 | 24320 |
| YP_001469254.1 | NC_009820_p21 | hypothetical protein | phrog_553 | minor tail protein | tail | 1 | 22143 | 23033 |
| YP_001469289.1 | NC_009820_p56 | hypothetical protein | phrog_658 | unknown function | unknown function | 1 | 40125 | 40472 |
| YP_001469297.1 | NC_009820_p64 | hypothetical protein | phrog_3290 | single strand annealing protein | DNA, RNA and nucleotide metabolism | 1 | 42540 | 43118 |
| YP_001469272.1 | NC_009820_p39 | hypothetical protein | phrog_5648 | unknown function | unknown function | -1 | 31050 | 31391 |
| YP_001469306.1 | NC_009820_p73 | hypothetical protein | phrog_1311 | unknown function | unknown function | 1 | 47076 | 47234 |
| YP_001469342.1 | NC_009820_p109 | hypothetical protein | phrog_144 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 58225 | 58551 |
| YP_001469327.1 | NC_009820_p94 | hypothetical protein | phrog_1467 | unknown function | unknown function | 1 | 52911 | 53552 |
| YP_001469323.1 | NC_009820_p90 | hypothetical protein | phrog_1545 | unknown function | unknown function | 1 | 52127 | 52264 |
| YP_001469238.1 | NC_009820_p5 | scaffolding protein | phrog_2592 | head scaffolding protein | head and packaging | 1 | 4393 | 5043 |
| YP_001469263.1 | NC_009820_p30 | lysin A | phrog_700 | endolysin | lysis | 1 | 26532 | 27743 |
| YP_001469308.1 | NC_009820_p75 | hypothetical protein | phrog_5956 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 47750 | 48310 |
| YP_001469293.1 | NC_009820_p60 | hypothetical protein | phrog_2078 | unknown function | unknown function | 1 | 41732 | 41887 |
| YP_001469304.1 | NC_009820_p71 | hypothetical protein | singleton | unknown function | unknown function | 1 | 45591 | 45827 |
| YP_001469245.1 | NC_009820_p12 | tail assembly chaperone | phrog_978 | tail assembly chaperone | tail | 1 | 8579 | 9515 |
| YP_001469334.1 | NC_009820_p101 | hypothetical protein | phrog_2057 | unknown function | unknown function | 1 | 55032 | 55193 |
| YP_001469309.1 | NC_009820_p76 | hypothetical protein | phrog_2080 | unknown function | unknown function | 1 | 48310 | 48573 |
| YP_001469296.1 | NC_009820_p63 | hypothetical protein | phrog_2632 | unknown function | unknown function | 1 | 42283 | 42543 |
| YP_001469251.1 | NC_009820_p18 | minor tail protein | phrog_346 | minor tail protein | tail | 1 | 17451 | 19988 |
| YP_001469250.1 | NC_009820_p17 | minor tail protein | phrog_732 | minor tail protein | tail | 1 | 16606 | 17454 |
| YP_001469286.1 | NC_009820_p53 | hypothetical protein | phrog_1797 | unknown function | unknown function | 1 | 38001 | 38609 |
| YP_001469277.1 | NC_009820_p44 | hypothetical protein | phrog_1948 | unknown function | unknown function | -1 | 33843 | 34301 |
| YP_001469313.1 | NC_009820_p80 | hypothetical protein | phrog_2591 | unknown function | unknown function | 1 | 49334 | 49522 |
| YP_001469281.1 | NC_009820_p48 | hypothetical protein | phrog_2025 | unknown function | unknown function | 1 | 36616 | 36831 |
| YP_001469325.1 | NC_009820_p92 | hypothetical protein | phrog_2278 | unknown function | unknown function | 1 | 52487 | 52654 |