Genomic map of Staphylococcus phage SAP-2 (NC_009875)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_009875
Definition
Staphylococcus phage SAP-2, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Podoviridae; Rakietenvirinae; Rosenblumvirus; Staphylococcus virus SAP2.
DB of origin
REFSEQ
Length
17938
Host Name
Staphylococcus aureus
Host domain
Bacteria
Is prophage?
undef
Number of proteins
20
%GC
28.94
Number of singletons
0
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_001491538.1 NC_009875_p13 hypothetical protein phrog_17481 minor tail protein tail -1 10838 11371
YP_001491545.1 NC_009875_p20 hypothetical protein phrog_7102 unknown function unknown function -1 17325 17663
YP_001491532.1 NC_009875_p7 hypothetical protein phrog_6099 unknown function unknown function 1 2101 2559
YP_001491544.1 NC_009875_p19 hypothetical protein phrog_6289 unknown function unknown function -1 17130 17312
YP_001491529.1 NC_009875_p4 hypothetical protein phrog_7019 unknown function unknown function 1 1318 1497
YP_001491543.1 NC_009875_p18 major capsid protein phrog_2006 major head protein head and packaging -1 15897 17123
YP_001491537.1 NC_009875_p12 tail protein phrog_2248 tail protein tail -1 8104 9867
YP_001491534.1 NC_009875_p9 DNA polymerase phrog_1907 DNA polymerase DNA, RNA and nucleotide metabolism 1 3870 6155
YP_001491542.1 NC_009875_p17 upper collar protein phrog_2038 upper collar connector connector -1 14900 15649
YP_001491533.1 NC_009875_p8 encapsidation protein phrog_2150 terminase head and packaging 1 2718 3854
YP_001491540.1 NC_009875_p15 minor structural protein phrog_287 minor tail protein tail -1 12195 14138
YP_001491539.1 NC_009875_p14 amidase phrog_635 endolysin lysis -1 11434 12183
YP_001491530.1 NC_009875_p5 hypothetical protein phrog_7529 unknown function unknown function 1 1500 1913
YP_001491536.1 NC_009875_p11 holin phrog_199 holin lysis -1 7679 8101
YP_001491526.1 NC_009875_p1 hypothetical protein phrog_6274 unknown function unknown function 1 343 645
YP_001491527.1 NC_009875_p2 hypothetical protein phrog_6346 unknown function unknown function 1 660 896
YP_001491528.1 NC_009875_p3 hypothetical protein phrog_378 single strand DNA binding protein DNA, RNA and nucleotide metabolism 1 900 1268
YP_001491541.1 NC_009875_p16 lower collar protein phrog_3225 adaptor Ad4 connector -1 14128 14907
YP_001491531.1 NC_009875_p6 hypothetical protein phrog_8543 unknown function unknown function 1 1906 2073
YP_001491535.1 NC_009875_p10 hypothetical protein phrog_5979 unknown function unknown function -1 6268 7704