| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_009875 |
Definition |
Staphylococcus phage SAP-2, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Podoviridae; Rakietenvirinae; Rosenblumvirus; Staphylococcus virus SAP2. |
DB of origin |
REFSEQ |
Length |
17938 |
Host Name |
Staphylococcus aureus |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
20 |
%GC |
28.94 |
Number of singletons |
0 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_001491538.1 | NC_009875_p13 | hypothetical protein | phrog_17481 | minor tail protein | tail | -1 | 10838 | 11371 |
| YP_001491545.1 | NC_009875_p20 | hypothetical protein | phrog_7102 | unknown function | unknown function | -1 | 17325 | 17663 |
| YP_001491532.1 | NC_009875_p7 | hypothetical protein | phrog_6099 | unknown function | unknown function | 1 | 2101 | 2559 |
| YP_001491544.1 | NC_009875_p19 | hypothetical protein | phrog_6289 | unknown function | unknown function | -1 | 17130 | 17312 |
| YP_001491529.1 | NC_009875_p4 | hypothetical protein | phrog_7019 | unknown function | unknown function | 1 | 1318 | 1497 |
| YP_001491543.1 | NC_009875_p18 | major capsid protein | phrog_2006 | major head protein | head and packaging | -1 | 15897 | 17123 |
| YP_001491537.1 | NC_009875_p12 | tail protein | phrog_2248 | tail protein | tail | -1 | 8104 | 9867 |
| YP_001491534.1 | NC_009875_p9 | DNA polymerase | phrog_1907 | DNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 3870 | 6155 |
| YP_001491542.1 | NC_009875_p17 | upper collar protein | phrog_2038 | upper collar connector | connector | -1 | 14900 | 15649 |
| YP_001491533.1 | NC_009875_p8 | encapsidation protein | phrog_2150 | terminase | head and packaging | 1 | 2718 | 3854 |
| YP_001491540.1 | NC_009875_p15 | minor structural protein | phrog_287 | minor tail protein | tail | -1 | 12195 | 14138 |
| YP_001491539.1 | NC_009875_p14 | amidase | phrog_635 | endolysin | lysis | -1 | 11434 | 12183 |
| YP_001491530.1 | NC_009875_p5 | hypothetical protein | phrog_7529 | unknown function | unknown function | 1 | 1500 | 1913 |
| YP_001491536.1 | NC_009875_p11 | holin | phrog_199 | holin | lysis | -1 | 7679 | 8101 |
| YP_001491526.1 | NC_009875_p1 | hypothetical protein | phrog_6274 | unknown function | unknown function | 1 | 343 | 645 |
| YP_001491527.1 | NC_009875_p2 | hypothetical protein | phrog_6346 | unknown function | unknown function | 1 | 660 | 896 |
| YP_001491528.1 | NC_009875_p3 | hypothetical protein | phrog_378 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 900 | 1268 |
| YP_001491541.1 | NC_009875_p16 | lower collar protein | phrog_3225 | adaptor Ad4 | connector | -1 | 14128 | 14907 |
| YP_001491531.1 | NC_009875_p6 | hypothetical protein | phrog_8543 | unknown function | unknown function | 1 | 1906 | 2073 |
| YP_001491535.1 | NC_009875_p10 | hypothetical protein | phrog_5979 | unknown function | unknown function | -1 | 6268 | 7704 |