| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_009877 |
Definition |
Mycobacterium phage U2, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Fromanvirus. |
DB of origin |
REFSEQ |
Length |
51277 |
Host Name |
Mycobacterium |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
81 |
%GC |
63.69 |
Number of singletons |
2 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_001491611.1 | NC_009877_p41 | hypothetical protein | phrog_1971 | unknown function | unknown function | -1 | 31663 | 31935 |
| YP_001491572.1 | NC_009877_p2 | hypothetical protein | phrog_333 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 749 | 1045 |
| YP_001491617.1 | NC_009877_p47 | hypothetical protein | phrog_2094 | unknown function | unknown function | -1 | 35483 | 35815 |
| YP_001491601.1 | NC_009877_p31 | hypothetical protein | phrog_346 | minor tail protein | tail | 1 | 24238 | 26091 |
| YP_001491612.1 | NC_009877_p42 | hypothetical protein | phrog_383 | unknown function | unknown function | -1 | 32219 | 32575 |
| YP_001491578.1 | NC_009877_p8 | lysozyme | phrog_317 | endolysin | lysis | 1 | 4186 | 5619 |
| YP_001491585.1 | NC_009877_p15 | head structural protein | phrog_10 | major head protein | head and packaging | 1 | 11521 | 12537 |
| YP_001491591.1 | NC_009877_p21 | hypothetical protein | phrog_117 | major tail protein | tail | 1 | 14742 | 15590 |
| YP_001491635.1 | NC_009877_p65 | hypothetical protein | phrog_8167 | unknown function | unknown function | -1 | 44618 | 44926 |
| YP_001491618.1 | NC_009877_p48 | hypothetical protein | phrog_499 | unknown function | unknown function | -1 | 35812 | 35994 |
| YP_001491610.1 | NC_009877_p40 | hypothetical protein | phrog_1860 | unknown function | unknown function | -1 | 31571 | 31717 |
| YP_001491619.1 | NC_009877_p49 | hypothetical protein | phrog_354 | sigma-K factor | transcription regulation | -1 | 35991 | 36782 |
| YP_001491579.1 | NC_009877_p9 | hypothetical protein | phrog_102 | endolysin | lysis | 1 | 5609 | 6577 |
| YP_001491593.1 | NC_009877_p23 | hypothetical protein | phrog_3656 | tail assembly chaperone | tail | 1 | 16127 | 16498 |
| YP_001491581.1 | NC_009877_p11 | terminase | phrog_9 | terminase large subunit | head and packaging | 1 | 6935 | 8623 |
| YP_001491587.1 | NC_009877_p17 | hypothetical protein | phrog_137 | head-tail adaptor Ad1 | connector | 1 | 13077 | 13526 |
| YP_001491592.1 | NC_009877_p22 | hypothetical protein | phrog_330 | tail assembly chaperone | tail | 1 | 15699 | 16076 |
| YP_001491596.1 | NC_009877_p26 | hypothetical protein | phrog_1543 | minor tail protein | tail | 1 | 21057 | 21239 |
| YP_001491590.1 | NC_009877_p20 | hypothetical protein | phrog_123 | tail terminator | connector | 1 | 14287 | 14733 |
| YP_001491622.1 | NC_009877_p52 | hypothetical protein | phrog_1503 | unknown function | unknown function | -1 | 38635 | 38814 |
| YP_001491623.1 | NC_009877_p53 | hypothetical protein | phrog_1167 | phosphofructokinase | other | -1 | 38811 | 39377 |
| YP_001491620.1 | NC_009877_p50 | hypothetical protein | phrog_1782 | site-specific recombination directionality factor RDF | integration and excision | -1 | 36775 | 36915 |
| YP_001491640.1 | NC_009877_p70 | hypothetical protein | phrog_439 | site-specific recombination directionality factor RDF | integration and excision | -1 | 46753 | 47052 |
| YP_001491628.1 | NC_009877_p58 | endonuclease | phrog_307 | endonuclease VII | DNA, RNA and nucleotide metabolism | -1 | 40633 | 41121 |
| YP_001491615.1 | NC_009877_p45 | hypothetical protein | phrog_1781 | unknown function | unknown function | -1 | 34696 | 34896 |
| YP_001491602.1 | NC_009877_p32 | beta lactamase | phrog_382 | minor tail protein with lysin activity | tail | 1 | 26165 | 27562 |
| YP_001491630.1 | NC_009877_p60 | Glutaredoxin | phrog_22 | thioredoxin domain | DNA, RNA and nucleotide metabolism | -1 | 41592 | 41888 |
| YP_001491609.1 | NC_009877_p39 | hypothetical protein | phrog_2035 | unknown function | unknown function | -1 | 31404 | 31574 |
| YP_001491629.1 | NC_009877_p59 | hypothetical protein | phrog_722 | unknown function | unknown function | -1 | 41191 | 41499 |
| YP_001491571.1 | NC_009877_p1 | hypothetical protein | phrog_4649 | unknown function | unknown function | 1 | 600 | 752 |
| YP_001491641.1 | NC_009877_p71 | hypothetical protein | phrog_6474 | recombination directionality factor | integration and excision | -1 | 47045 | 47284 |
| YP_001491644.1 | NC_009877_p74 | hypothetical protein | phrog_1155 | unknown function | unknown function | -1 | 47863 | 48051 |
| YP_001491636.1 | NC_009877_p66 | hypothetical protein | phrog_17362 | unknown function | unknown function | -1 | 45012 | 45239 |
| YP_001491631.1 | NC_009877_p61 | DnaB-like helicase | phrog_243 | DnaB-like replicative helicase | DNA, RNA and nucleotide metabolism | -1 | 41888 | 42709 |
| YP_001491642.1 | NC_009877_p72 | hypothetical protein | phrog_1720 | unknown function | unknown function | -1 | 47221 | 47490 |
| YP_001491627.1 | NC_009877_p57 | hypothetical protein | phrog_397 | unknown function | unknown function | -1 | 40470 | 40613 |
| YP_001491624.1 | NC_009877_p54 | DNA topoisomerase-primase | phrog_47 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 39374 | 39847 |
| YP_001491650.1 | NC_009877_p80 | hypothetical protein | phrog_3414 | unknown function | unknown function | -1 | 50313 | 50597 |
| YP_001491582.1 | NC_009877_p12 | hypothetical protein | phrog_104 | portal protein | head and packaging | 1 | 8620 | 10062 |
| YP_001491599.1 | NC_009877_p29 | hypothetical protein | phrog_981 | minor tail protein | tail | 1 | 23522 | 23869 |
| YP_001491594.1 | NC_009877_p24 | tape measure protein | phrog_305 | tail length tape measure protein | tail | 1 | 16511 | 18979 |
| YP_001491632.1 | NC_009877_p62 | hypothetical protein | phrog_520 | unknown function | unknown function | -1 | 42995 | 43288 |
| YP_001491584.1 | NC_009877_p14 | hypothetical protein | phrog_233 | head scaffolding protein | head and packaging | 1 | 10998 | 11510 |
| YP_001491638.1 | NC_009877_p68 | hypothetical protein | phrog_1809 | unknown function | unknown function | -1 | 45541 | 45936 |
| YP_001491647.1 | NC_009877_p77 | hypothetical protein | singleton | unknown function | unknown function | -1 | 48672 | 48866 |
| YP_001491625.1 | NC_009877_p55 | DNA primase | phrog_360 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 39744 | 40259 |
| YP_001491604.1 | NC_009877_p34 | hypothetical protein | singleton | unknown function | unknown function | 1 | 28072 | 28176 |
| YP_001491586.1 | NC_009877_p16 | hypothetical protein | phrog_1857 | head-tail connector protein | connector | 1 | 12616 | 13077 |
| YP_001491646.1 | NC_009877_p76 | hypothetical protein | phrog_932 | unknown function | unknown function | -1 | 48526 | 48675 |
| YP_001491573.1 | NC_009877_p3 | hypothetical protein | phrog_226 | minor tail protein | tail | 1 | 1080 | 1514 |
| YP_001491645.1 | NC_009877_p75 | hypothetical protein | phrog_861 | site-specific recombination directionality factor RDF | integration and excision | -1 | 48051 | 48218 |
| YP_001491626.1 | NC_009877_p56 | hypothetical protein | phrog_1783 | unknown function | unknown function | -1 | 40238 | 40399 |
| YP_001491637.1 | NC_009877_p67 | hypothetical protein | phrog_1584 | unknown function | unknown function | -1 | 45236 | 45544 |
| YP_001491574.1 | NC_009877_p4 | Tail fiber-like protein | phrog_1197 | tail protein | tail | 1 | 1882 | 2952 |
| YP_001491643.1 | NC_009877_p73 | hypothetical protein | phrog_1387 | unknown function | unknown function | -1 | 47666 | 47866 |
| YP_001491648.1 | NC_009877_p78 | DNA methylase | phrog_363 | DNA methyltransferase | other | -1 | 49301 | 49972 |
| YP_001491600.1 | NC_009877_p30 | hypothetical protein | phrog_1397 | unknown function | unknown function | 1 | 23893 | 24213 |
| YP_001491614.1 | NC_009877_p44 | hypothetical protein | phrog_6173 | unknown function | unknown function | -1 | 34445 | 34699 |
| YP_001491580.1 | NC_009877_p10 | hypothetical protein | phrog_419 | unknown function | unknown function | 1 | 6601 | 6915 |
| YP_001491651.1 | NC_009877_p81 | hypothetical protein | phrog_1387 | unknown function | unknown function | -1 | 50765 | 50965 |
| YP_001491603.1 | NC_009877_p33 | hypothetical protein | phrog_644 | unknown function | unknown function | 1 | 27679 | 27975 |
| YP_001491621.1 | NC_009877_p51 | hypothetical protein | phrog_221 | metallo-phosphoesterase | other | -1 | 36920 | 38638 |
| YP_001491608.1 | NC_009877_p38 | hypothetical protein | phrog_1966 | unknown function | unknown function | -1 | 31135 | 31407 |
| YP_001491633.1 | NC_009877_p63 | hypothetical protein | phrog_2184 | unknown function | unknown function | -1 | 43285 | 43530 |
| YP_001491588.1 | NC_009877_p18 | hypothetical protein | phrog_320 | head closure Hc1 | connector | 1 | 13583 | 13888 |
| YP_001491607.1 | NC_009877_p37 | integrase | phrog_95 | integrase | integration and excision | 1 | 29526 | 31013 |
| YP_001491583.1 | NC_009877_p13 | hypothetical protein | phrog_193 | head maturation protease | head and packaging | 1 | 10059 | 10940 |
| YP_001491595.1 | NC_009877_p25 | minor tail protein | phrog_106 | minor tail protein | tail | 1 | 19003 | 21060 |
| YP_001491577.1 | NC_009877_p7 | hypothetical protein | phrog_747 | unknown function | unknown function | 1 | 3929 | 4186 |
| YP_001491598.1 | NC_009877_p28 | hypothetical protein | phrog_352 | minor tail protein | tail | 1 | 23079 | 23525 |
| YP_001491597.1 | NC_009877_p27 | minor tail protein | phrog_110 | minor tail protein | tail | 1 | 21239 | 23041 |
| YP_001491649.1 | NC_009877_p79 | hypothetical protein | phrog_4958 | unknown function | unknown function | -1 | 49977 | 50261 |
| YP_001491575.1 | NC_009877_p5 | hypothetical protein | phrog_553 | minor tail protein | tail | 1 | 2962 | 3651 |
| YP_001491634.1 | NC_009877_p64 | RecB family exonuclease | phrog_69 | exonuclease | DNA, RNA and nucleotide metabolism | -1 | 43818 | 44522 |
| YP_001491616.1 | NC_009877_p46 | hypothetical protein | phrog_364 | ribonucleoside reductase class II | DNA, RNA and nucleotide metabolism | -1 | 34957 | 35448 |
| YP_001491576.1 | NC_009877_p6 | hypothetical protein | phrog_1718 | tail protein | tail | 1 | 3661 | 3921 |
| YP_001491589.1 | NC_009877_p19 | hypothetical protein | phrog_321 | tail completion or Neck1 protein | connector | 1 | 13888 | 14283 |
| YP_001491613.1 | NC_009877_p43 | DNA polymerase I | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | -1 | 32596 | 34422 |
| YP_001491605.1 | NC_009877_p35 | hypothetical protein | phrog_754 | minor tail protein | tail | 1 | 28173 | 28955 |
| YP_001491606.1 | NC_009877_p36 | hypothetical protein | phrog_411 | unknown function | unknown function | 1 | 29076 | 29360 |
| YP_001491639.1 | NC_009877_p69 | hypothetical protein | phrog_357 | transcriptional repressor | transcription regulation | -1 | 45979 | 46491 |