| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_009878 |
Definition |
Mycobacterium phage Bethlehem, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Fromanvirus. |
DB of origin |
REFSEQ |
Length |
52250 |
Host Name |
Mycobacterium |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
87 |
%GC |
63.24 |
Number of singletons |
0 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_001491683.1 | NC_009878_p32 | beta-lactamase | phrog_382 | minor tail protein with lysin activity | tail | 1 | 27222 | 28700 |
| YP_001491733.1 | NC_009878_p82 | hypothetical protein | phrog_1387 | unknown function | unknown function | -1 | 50149 | 50352 |
| YP_001491655.1 | NC_009878_p4 | hypothetical protein | phrog_2830 | unknown function | unknown function | 1 | 1685 | 1996 |
| YP_001491674.1 | NC_009878_p23 | hypothetical protein | phrog_3656 | tail assembly chaperone | tail | 1 | 17213 | 17614 |
| YP_001491711.1 | NC_009878_p60 | hypothetical protein | phrog_3647 | unknown function | unknown function | -1 | 42043 | 42204 |
| YP_001491689.1 | NC_009878_p38 | hypothetical protein | phrog_1966 | unknown function | unknown function | -1 | 31790 | 32197 |
| YP_001491719.1 | NC_009878_p68 | hypothetical protein | phrog_2184 | unknown function | unknown function | -1 | 44311 | 44631 |
| YP_001491730.1 | NC_009878_p79 | hypothetical protein | phrog_439 | site-specific recombination directionality factor RDF | integration and excision | -1 | 49415 | 49714 |
| YP_001491702.1 | NC_009878_p51 | hypothetical protein | phrog_1782 | site-specific recombination directionality factor RDF | integration and excision | -1 | 37432 | 37572 |
| YP_001491670.1 | NC_009878_p19 | hypothetical protein | phrog_321 | tail completion or Neck1 protein | connector | 1 | 15003 | 15398 |
| YP_001491662.1 | NC_009878_p11 | terminase | phrog_9 | terminase large subunit | head and packaging | 1 | 7260 | 9971 |
| YP_001491672.1 | NC_009878_p21 | major tail protein | phrog_117 | major tail protein | tail | 1 | 15857 | 16705 |
| YP_001491735.1 | NC_009878_p84 | hypothetical protein | phrog_861 | site-specific recombination directionality factor RDF | integration and excision | -1 | 50537 | 50704 |
| YP_001491659.1 | NC_009878_p8 | hypothetical protein | phrog_747 | unknown function | unknown function | 1 | 4592 | 4849 |
| YP_001491729.1 | NC_009878_p78 | hypothetical protein | phrog_357 | transcriptional repressor | transcription regulation | -1 | 48641 | 49153 |
| YP_001491708.1 | NC_009878_p57 | hypothetical protein | phrog_1783 | unknown function | unknown function | -1 | 40970 | 41131 |
| YP_001491717.1 | NC_009878_p66 | hypothetical protein | phrog_780 | unknown function | unknown function | -1 | 43779 | 44024 |
| YP_001491727.1 | NC_009878_p76 | hypothetical protein | phrog_1584 | unknown function | unknown function | -1 | 47886 | 48203 |
| YP_001491690.1 | NC_009878_p39 | hypothetical protein | phrog_2035 | unknown function | unknown function | -1 | 32059 | 32238 |
| YP_001491676.1 | NC_009878_p25 | minor tail protein | phrog_106 | minor tail protein | tail | 1 | 20121 | 22178 |
| YP_001491692.1 | NC_009878_p41 | hypothetical protein | phrog_1971 | unknown function | unknown function | -1 | 32318 | 32590 |
| YP_001491701.1 | NC_009878_p50 | hypothetical protein | phrog_354 | sigma-K factor | transcription regulation | -1 | 36648 | 37439 |
| YP_001491671.1 | NC_009878_p20 | hypothetical protein | phrog_123 | tail terminator | connector | 1 | 15402 | 15848 |
| YP_001491732.1 | NC_009878_p81 | hypothetical protein | phrog_1720 | unknown function | unknown function | -1 | 49883 | 50152 |
| YP_001491666.1 | NC_009878_p15 | major head protein | phrog_10 | major head protein | head and packaging | 1 | 12869 | 13870 |
| YP_001491715.1 | NC_009878_p64 | hypothetical protein | phrog_2507 | unknown function | unknown function | -1 | 43484 | 43657 |
| YP_001491736.1 | NC_009878_p85 | hypothetical protein | phrog_722 | unknown function | unknown function | -1 | 50701 | 50979 |
| YP_001491713.1 | NC_009878_p62 | DnaB-like helicase | phrog_243 | DnaB-like replicative helicase | DNA, RNA and nucleotide metabolism | -1 | 42499 | 43320 |
| YP_001491710.1 | NC_009878_p59 | endonuclease | phrog_307 | endonuclease VII | DNA, RNA and nucleotide metabolism | -1 | 41485 | 41973 |
| YP_001491652.1 | NC_009878_p1 | hypothetical protein | phrog_4649 | unknown function | unknown function | 1 | 599 | 751 |
| YP_001491686.1 | NC_009878_p35 | hypothetical protein | phrog_20812 | unknown function | unknown function | 1 | 29311 | 29604 |
| YP_001491669.1 | NC_009878_p18 | hypothetical protein | phrog_320 | head closure Hc1 | connector | 1 | 14641 | 15003 |
| YP_001491728.1 | NC_009878_p77 | hypothetical protein | phrog_1809 | unknown function | unknown function | -1 | 48200 | 48604 |
| YP_001491688.1 | NC_009878_p37 | integrase | phrog_95 | integrase | integration and excision | 1 | 30167 | 31669 |
| YP_001491718.1 | NC_009878_p67 | hypothetical protein | phrog_520 | unknown function | unknown function | -1 | 44021 | 44314 |
| YP_001491678.1 | NC_009878_p27 | minor tail protein | phrog_110 | minor tail protein | tail | 1 | 22379 | 24181 |
| YP_001491658.1 | NC_009878_p7 | hypothetical protein | phrog_1718 | tail protein | tail | 1 | 4324 | 4584 |
| YP_001491695.1 | NC_009878_p44 | DNA polymerase I | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | -1 | 33254 | 35080 |
| YP_001491726.1 | NC_009878_p75 | hypothetical protein | phrog_5947 | unknown function | unknown function | -1 | 47722 | 47889 |
| YP_001491723.1 | NC_009878_p72 | hypothetical protein | phrog_4285 | transposase | integration and excision | -1 | 45995 | 46702 |
| YP_001491738.1 | NC_009878_p87 | hypothetical protein | phrog_828 | unknown function | unknown function | -1 | 51644 | 51847 |
| YP_001491705.1 | NC_009878_p54 | hypothetical protein | phrog_1167 | phosphofructokinase | other | -1 | 39468 | 40112 |
| YP_001491704.1 | NC_009878_p53 | hypothetical protein | phrog_1503 | unknown function | unknown function | -1 | 39292 | 39471 |
| YP_001491693.1 | NC_009878_p42 | hypothetical protein | phrog_9812 | unknown function | unknown function | -1 | 32587 | 32838 |
| YP_001491700.1 | NC_009878_p49 | hypothetical protein | phrog_499 | unknown function | unknown function | -1 | 36469 | 36651 |
| YP_001491687.1 | NC_009878_p36 | hypothetical protein | phrog_411 | unknown function | unknown function | 1 | 29724 | 30020 |
| YP_001491722.1 | NC_009878_p71 | hypothetical protein | phrog_8167 | unknown function | unknown function | -1 | 45644 | 45979 |
| YP_001491684.1 | NC_009878_p33 | hypothetical protein | phrog_644 | unknown function | unknown function | 1 | 28793 | 29113 |
| YP_001491725.1 | NC_009878_p74 | hypothetical protein | phrog_6068 | unknown function | unknown function | -1 | 47496 | 47729 |
| YP_001491685.1 | NC_009878_p34 | hypothetical protein | phrog_1560 | unknown function | unknown function | 1 | 29123 | 29314 |
| YP_001491661.1 | NC_009878_p10 | hypothetical protein | phrog_102 | endolysin | lysis | 1 | 6272 | 7240 |
| YP_001491675.1 | NC_009878_p24 | tape measure protein | phrog_305 | tail length tape measure protein | tail | 1 | 17626 | 20097 |
| YP_001491673.1 | NC_009878_p22 | hypothetical protein | phrog_330 | tail assembly chaperone | tail | 1 | 16707 | 17192 |
| YP_001491716.1 | NC_009878_p65 | hypothetical protein | phrog_1705 | unknown function | unknown function | -1 | 43654 | 43782 |
| YP_001491703.1 | NC_009878_p52 | hypothetical protein | phrog_221 | metallo-phosphoesterase | other | -1 | 37577 | 39295 |
| YP_001491682.1 | NC_009878_p31 | hypothetical protein | phrog_346 | minor tail protein | tail | 1 | 25376 | 27229 |
| YP_001491653.1 | NC_009878_p2 | hypothetical protein | phrog_333 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 748 | 1044 |
| YP_001491681.1 | NC_009878_p30 | hypothetical protein | phrog_1397 | unknown function | unknown function | 1 | 25025 | 25351 |
| YP_001491667.1 | NC_009878_p16 | hypothetical protein | phrog_1857 | head-tail connector protein | connector | 1 | 13956 | 14192 |
| YP_001491698.1 | NC_009878_p47 | hypothetical protein | phrog_364 | ribonucleoside reductase class II | DNA, RNA and nucleotide metabolism | -1 | 35615 | 36106 |
| YP_001491714.1 | NC_009878_p63 | hypothetical protein | phrog_2864 | unknown function | unknown function | -1 | 43314 | 43484 |
| YP_001491734.1 | NC_009878_p83 | hypothetical protein | phrog_1155 | unknown function | unknown function | -1 | 50349 | 50537 |
| YP_001491665.1 | NC_009878_p14 | hypothetical protein | phrog_233 | head scaffolding protein | head and packaging | 1 | 12347 | 12859 |
| YP_001491663.1 | NC_009878_p12 | hypothetical protein | phrog_104 | portal protein | head and packaging | 1 | 9968 | 11410 |
| YP_001491677.1 | NC_009878_p26 | hypothetical protein | phrog_1543 | minor tail protein | tail | 1 | 22197 | 22379 |
| YP_001491707.1 | NC_009878_p56 | DNA primase | phrog_360 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 40581 | 40991 |
| YP_001491731.1 | NC_009878_p80 | hypothetical protein | phrog_6474 | recombination directionality factor | integration and excision | -1 | 49707 | 49886 |
| YP_001491706.1 | NC_009878_p55 | topoisomerase-primase | phrog_47 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 40109 | 40567 |
| YP_001491664.1 | NC_009878_p13 | hypothetical protein | phrog_193 | head maturation protease | head and packaging | 1 | 11407 | 12288 |
| YP_001491657.1 | NC_009878_p6 | hypothetical protein | phrog_553 | minor tail protein | tail | 1 | 3609 | 4310 |
| YP_001491654.1 | NC_009878_p3 | hypothetical protein | phrog_226 | minor tail protein | tail | 1 | 1079 | 1513 |
| YP_001491697.1 | NC_009878_p46 | hypothetical protein | phrog_1781 | unknown function | unknown function | -1 | 35354 | 35584 |
| YP_001491724.1 | NC_009878_p73 | hypothetical protein | phrog_4604 | unknown function | unknown function | -1 | 47038 | 47499 |
| YP_001491680.1 | NC_009878_p29 | hypothetical protein | phrog_981 | minor tail protein | tail | 1 | 24660 | 25007 |
| YP_001491679.1 | NC_009878_p28 | hypothetical protein | phrog_352 | minor tail protein | tail | 1 | 24217 | 24663 |
| YP_001491737.1 | NC_009878_p86 | hypothetical protein | phrog_932 | unknown function | unknown function | -1 | 51000 | 51149 |
| YP_001491709.1 | NC_009878_p58 | hypothetical protein | phrog_397 | unknown function | unknown function | -1 | 41202 | 41462 |
| YP_001491694.1 | NC_009878_p43 | hypothetical protein | phrog_383 | unknown function | unknown function | -1 | 32874 | 33257 |
| YP_001491660.1 | NC_009878_p9 | lysin | phrog_317 | endolysin | lysis | 1 | 4849 | 6282 |
| YP_001491668.1 | NC_009878_p17 | hypothetical protein | phrog_137 | head-tail adaptor Ad1 | connector | 1 | 14192 | 14641 |
| YP_001491696.1 | NC_009878_p45 | hypothetical protein | phrog_6173 | unknown function | unknown function | -1 | 35103 | 35357 |
| YP_001491720.1 | NC_009878_p69 | hypothetical protein | phrog_1763 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 44635 | 44817 |
| YP_001491712.1 | NC_009878_p61 | glutaredoxin | phrog_22 | thioredoxin domain | DNA, RNA and nucleotide metabolism | -1 | 42233 | 42502 |
| YP_001491721.1 | NC_009878_p70 | hypothetical protein | phrog_69 | exonuclease | DNA, RNA and nucleotide metabolism | -1 | 44844 | 45644 |
| YP_001491656.1 | NC_009878_p5 | hypothetical protein | phrog_1197 | tail protein | tail | 1 | 2529 | 3599 |
| YP_001491691.1 | NC_009878_p40 | hypothetical protein | phrog_1860 | unknown function | unknown function | -1 | 32226 | 32321 |
| YP_001491699.1 | NC_009878_p48 | hypothetical protein | phrog_2094 | unknown function | unknown function | -1 | 36136 | 36468 |