Genomic map of Pseudomonas phage LKD16 (NC_009935)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_009935
Definition
Pseudomonas phage LKD16, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Autographiviridae; Krylovirinae; Phikmvvirus; Pseudomonas virus LKD16.
DB of origin
REFSEQ
Length
43200
Host Name
Pseudomonas aeruginosa
Host domain
Bacteria
Is prophage?
undef
Number of proteins
53
%GC
62.31
Number of singletons
1
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_001522809.1 NC_009935_p21 hypothetical protein phrog_7292 unknown function unknown function 1 11490 11834
YP_001522790.1 NC_009935_p2 hypothetical protein phrog_5722 unknown function unknown function 1 1765 2049
YP_001522835.1 NC_009935_p47 DNA maturase B phrog_38 terminase large subunit head and packaging 1 39212 41017
YP_001522832.1 NC_009935_p44 structural protein phrog_4176 tail fiber protein tail 1 37381 38289
YP_001522798.1 NC_009935_p10 hypothetical protein phrog_5433 unknown function unknown function 1 5003 5413
YP_001522819.1 NC_009935_p31 hypothetical protein phrog_6575 unknown function unknown function 1 21224 21478
YP_001522792.1 NC_009935_p4 hypothetical protein phrog_1448 unknown function unknown function 1 2286 2825
YP_001522799.1 NC_009935_p11 hypothetical protein phrog_6915 unknown function unknown function 1 5482 5841
YP_001522822.1 NC_009935_p34 head-tail connector protein phrog_449 head-tail adaptor connector 1 22201 23733
YP_001522818.1 NC_009935_p30 T3/T7-like RNA polymerase phrog_414 RNA polymerase DNA, RNA and nucleotide metabolism 1 18619 21069
YP_001522815.1 NC_009935_p27 hypothetical protein phrog_403 DNA polymerase exonuclease subunit DNA, RNA and nucleotide metabolism 1 17043 18089
YP_001522804.1 NC_009935_p16 DnaG-like primase phrog_47 DNA primase DNA, RNA and nucleotide metabolism 1 7652 8476
YP_001522807.1 NC_009935_p19 ATP-dependent DNA ligase phrog_114 ATP-dependent DNA ligase DNA, RNA and nucleotide metabolism 1 10302 11246
YP_001522824.1 NC_009935_p36 capsid protein phrog_267 major head protein head and packaging 1 24775 25782
YP_001522840.1 NC_009935_p52 structural protein phrog_6908 minor head protein head and packaging 1 42071 42385
YP_001522794.1 NC_009935_p6 hypothetical protein phrog_7027 unknown function unknown function 1 3668 3886
YP_001522797.1 NC_009935_p9 hypothetical protein phrog_4955 unknown function unknown function 1 4681 4923
YP_001522795.1 NC_009935_p7 hypothetical protein phrog_8496 unknown function unknown function 1 4233 4412
YP_001522821.1 NC_009935_p33 structural protein phrog_3112 virion structural protein head and packaging 1 21893 22189
YP_001522828.1 NC_009935_p40 internal virion protein phrog_2083 internal virion lysozyme motif head and packaging 1 29460 32156
YP_001522796.1 NC_009935_p8 hypothetical protein phrog_4342 unknown function unknown function 1 4412 4684
YP_001522830.1 NC_009935_p42 tail fiber protein phrog_6953 tail fiber protein tail 1 36175 36930
YP_001522838.1 NC_009935_p50 phage lambda Rz1-like protein phrog_214 Rz-like spanin lysis 1 41651 41980
YP_001522817.1 NC_009935_p29 hypothetical protein phrog_1307 RNA polymerase inhibitor DNA, RNA and nucleotide metabolism 1 18464 18610
YP_001522813.1 NC_009935_p25 exonuclease phrog_107 exonuclease DNA, RNA and nucleotide metabolism 1 15675 16616
YP_001522810.1 NC_009935_p22 DNA polymerase A phrog_17 DNA polymerase DNA, RNA and nucleotide metabolism 1 11831 14257
YP_001522802.1 NC_009935_p14 DNA primase phrog_2563 unknown function unknown function 1 6924 7466
YP_001522812.1 NC_009935_p24 hypothetical protein phrog_862 unknown function unknown function 1 14620 15675
YP_001522806.1 NC_009935_p18 hypothetical protein phrog_1614 nucleotidyltransferase DNA, RNA and nucleotide metabolism 1 9703 10302
YP_001522837.1 NC_009935_p49 lysozyme phrog_7 endolysin lysis 1 41211 41693
YP_001522801.1 NC_009935_p13 hypothetical protein phrog_9409 unknown function unknown function 1 6734 7153
YP_001522805.1 NC_009935_p17 DNA helicase phrog_19 DnaB-like replicative helicase DNA, RNA and nucleotide metabolism 1 8520 9716
YP_001522826.1 NC_009935_p38 tail tubular protein B phrog_457 tail protein tail 1 26435 28915
YP_001522791.1 NC_009935_p3 hypothetical protein phrog_7124 unknown function unknown function 1 2049 2276
YP_001522789.1 NC_009935_p1 hypothetical protein phrog_20091 unknown function unknown function 1 1600 1755
YP_001522811.1 NC_009935_p23 hypothetical protein phrog_5437 unknown function unknown function 1 14254 14565
YP_001522831.1 NC_009935_p43 hypothetical protein phrog_8874 tail fiber protein tail 1 36930 37388
YP_001522808.1 NC_009935_p20 hypothetical protein singleton unknown function unknown function 1 11243 11506
YP_001522820.1 NC_009935_p32 hypothetical protein phrog_3986 unknown function unknown function 1 21475 21948
YP_001522841.1 NC_009935_p53 structural protein phrog_7171 minor head protein head and packaging 1 42435 42629
YP_001522803.1 NC_009935_p15 hypothetical protein phrog_9768 unknown function unknown function 1 7456 7584
YP_001522827.1 NC_009935_p39 internal virion protein A phrog_805 internal virion protein head and packaging 1 28915 29460
YP_001522814.1 NC_009935_p26 DNA endonuclease VII phrog_423 endonuclease VII DNA, RNA and nucleotide metabolism 1 16606 17046
YP_001522829.1 NC_009935_p41 virion protein phrog_342 internal virion protein with endolysin domain head and packaging 1 32160 36173
YP_001522823.1 NC_009935_p35 scaffolding protein phrog_1018 head scaffolding protein head and packaging 1 23737 24720
YP_001522825.1 NC_009935_p37 tail tubular protein A phrog_446 tail protein tail 1 25879 26433
YP_001522834.1 NC_009935_p46 hypothetical protein phrog_891 terminase small subunit head and packaging 1 38897 39202
YP_001522833.1 NC_009935_p45 structural protein phrog_4950 tail fiber protein tail 1 38292 38897
YP_001522793.1 NC_009935_p5 hypothetical protein phrog_6951 unknown function unknown function 1 3313 3681
YP_001522816.1 NC_009935_p28 hypothetical protein phrog_801 dATP / dGTP pyrophosphohydrolase DNA, RNA and nucleotide metabolism 1 18099 18467
YP_001522800.1 NC_009935_p12 hypothetical protein phrog_6982 DNA polymerase DNA, RNA and nucleotide metabolism 1 5883 6653
YP_001522836.1 NC_009935_p48 Class II holin phrog_6597 holin lysis 1 41014 41214
YP_001522839.1 NC_009935_p51 Rz1-like protein phrog_456 Rz-like spanin lysis 1 41868 42068