| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_009935 |
Definition |
Pseudomonas phage LKD16, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Autographiviridae; Krylovirinae; Phikmvvirus; Pseudomonas virus LKD16. |
DB of origin |
REFSEQ |
Length |
43200 |
Host Name |
Pseudomonas aeruginosa |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
53 |
%GC |
62.31 |
Number of singletons |
1 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_001522809.1 | NC_009935_p21 | hypothetical protein | phrog_7292 | unknown function | unknown function | 1 | 11490 | 11834 |
| YP_001522790.1 | NC_009935_p2 | hypothetical protein | phrog_5722 | unknown function | unknown function | 1 | 1765 | 2049 |
| YP_001522835.1 | NC_009935_p47 | DNA maturase B | phrog_38 | terminase large subunit | head and packaging | 1 | 39212 | 41017 |
| YP_001522832.1 | NC_009935_p44 | structural protein | phrog_4176 | tail fiber protein | tail | 1 | 37381 | 38289 |
| YP_001522798.1 | NC_009935_p10 | hypothetical protein | phrog_5433 | unknown function | unknown function | 1 | 5003 | 5413 |
| YP_001522819.1 | NC_009935_p31 | hypothetical protein | phrog_6575 | unknown function | unknown function | 1 | 21224 | 21478 |
| YP_001522792.1 | NC_009935_p4 | hypothetical protein | phrog_1448 | unknown function | unknown function | 1 | 2286 | 2825 |
| YP_001522799.1 | NC_009935_p11 | hypothetical protein | phrog_6915 | unknown function | unknown function | 1 | 5482 | 5841 |
| YP_001522822.1 | NC_009935_p34 | head-tail connector protein | phrog_449 | head-tail adaptor | connector | 1 | 22201 | 23733 |
| YP_001522818.1 | NC_009935_p30 | T3/T7-like RNA polymerase | phrog_414 | RNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 18619 | 21069 |
| YP_001522815.1 | NC_009935_p27 | hypothetical protein | phrog_403 | DNA polymerase exonuclease subunit | DNA, RNA and nucleotide metabolism | 1 | 17043 | 18089 |
| YP_001522804.1 | NC_009935_p16 | DnaG-like primase | phrog_47 | DNA primase | DNA, RNA and nucleotide metabolism | 1 | 7652 | 8476 |
| YP_001522807.1 | NC_009935_p19 | ATP-dependent DNA ligase | phrog_114 | ATP-dependent DNA ligase | DNA, RNA and nucleotide metabolism | 1 | 10302 | 11246 |
| YP_001522824.1 | NC_009935_p36 | capsid protein | phrog_267 | major head protein | head and packaging | 1 | 24775 | 25782 |
| YP_001522840.1 | NC_009935_p52 | structural protein | phrog_6908 | minor head protein | head and packaging | 1 | 42071 | 42385 |
| YP_001522794.1 | NC_009935_p6 | hypothetical protein | phrog_7027 | unknown function | unknown function | 1 | 3668 | 3886 |
| YP_001522797.1 | NC_009935_p9 | hypothetical protein | phrog_4955 | unknown function | unknown function | 1 | 4681 | 4923 |
| YP_001522795.1 | NC_009935_p7 | hypothetical protein | phrog_8496 | unknown function | unknown function | 1 | 4233 | 4412 |
| YP_001522821.1 | NC_009935_p33 | structural protein | phrog_3112 | virion structural protein | head and packaging | 1 | 21893 | 22189 |
| YP_001522828.1 | NC_009935_p40 | internal virion protein | phrog_2083 | internal virion lysozyme motif | head and packaging | 1 | 29460 | 32156 |
| YP_001522796.1 | NC_009935_p8 | hypothetical protein | phrog_4342 | unknown function | unknown function | 1 | 4412 | 4684 |
| YP_001522830.1 | NC_009935_p42 | tail fiber protein | phrog_6953 | tail fiber protein | tail | 1 | 36175 | 36930 |
| YP_001522838.1 | NC_009935_p50 | phage lambda Rz1-like protein | phrog_214 | Rz-like spanin | lysis | 1 | 41651 | 41980 |
| YP_001522817.1 | NC_009935_p29 | hypothetical protein | phrog_1307 | RNA polymerase inhibitor | DNA, RNA and nucleotide metabolism | 1 | 18464 | 18610 |
| YP_001522813.1 | NC_009935_p25 | exonuclease | phrog_107 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 15675 | 16616 |
| YP_001522810.1 | NC_009935_p22 | DNA polymerase A | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 11831 | 14257 |
| YP_001522802.1 | NC_009935_p14 | DNA primase | phrog_2563 | unknown function | unknown function | 1 | 6924 | 7466 |
| YP_001522812.1 | NC_009935_p24 | hypothetical protein | phrog_862 | unknown function | unknown function | 1 | 14620 | 15675 |
| YP_001522806.1 | NC_009935_p18 | hypothetical protein | phrog_1614 | nucleotidyltransferase | DNA, RNA and nucleotide metabolism | 1 | 9703 | 10302 |
| YP_001522837.1 | NC_009935_p49 | lysozyme | phrog_7 | endolysin | lysis | 1 | 41211 | 41693 |
| YP_001522801.1 | NC_009935_p13 | hypothetical protein | phrog_9409 | unknown function | unknown function | 1 | 6734 | 7153 |
| YP_001522805.1 | NC_009935_p17 | DNA helicase | phrog_19 | DnaB-like replicative helicase | DNA, RNA and nucleotide metabolism | 1 | 8520 | 9716 |
| YP_001522826.1 | NC_009935_p38 | tail tubular protein B | phrog_457 | tail protein | tail | 1 | 26435 | 28915 |
| YP_001522791.1 | NC_009935_p3 | hypothetical protein | phrog_7124 | unknown function | unknown function | 1 | 2049 | 2276 |
| YP_001522789.1 | NC_009935_p1 | hypothetical protein | phrog_20091 | unknown function | unknown function | 1 | 1600 | 1755 |
| YP_001522811.1 | NC_009935_p23 | hypothetical protein | phrog_5437 | unknown function | unknown function | 1 | 14254 | 14565 |
| YP_001522831.1 | NC_009935_p43 | hypothetical protein | phrog_8874 | tail fiber protein | tail | 1 | 36930 | 37388 |
| YP_001522808.1 | NC_009935_p20 | hypothetical protein | singleton | unknown function | unknown function | 1 | 11243 | 11506 |
| YP_001522820.1 | NC_009935_p32 | hypothetical protein | phrog_3986 | unknown function | unknown function | 1 | 21475 | 21948 |
| YP_001522841.1 | NC_009935_p53 | structural protein | phrog_7171 | minor head protein | head and packaging | 1 | 42435 | 42629 |
| YP_001522803.1 | NC_009935_p15 | hypothetical protein | phrog_9768 | unknown function | unknown function | 1 | 7456 | 7584 |
| YP_001522827.1 | NC_009935_p39 | internal virion protein A | phrog_805 | internal virion protein | head and packaging | 1 | 28915 | 29460 |
| YP_001522814.1 | NC_009935_p26 | DNA endonuclease VII | phrog_423 | endonuclease VII | DNA, RNA and nucleotide metabolism | 1 | 16606 | 17046 |
| YP_001522829.1 | NC_009935_p41 | virion protein | phrog_342 | internal virion protein with endolysin domain | head and packaging | 1 | 32160 | 36173 |
| YP_001522823.1 | NC_009935_p35 | scaffolding protein | phrog_1018 | head scaffolding protein | head and packaging | 1 | 23737 | 24720 |
| YP_001522825.1 | NC_009935_p37 | tail tubular protein A | phrog_446 | tail protein | tail | 1 | 25879 | 26433 |
| YP_001522834.1 | NC_009935_p46 | hypothetical protein | phrog_891 | terminase small subunit | head and packaging | 1 | 38897 | 39202 |
| YP_001522833.1 | NC_009935_p45 | structural protein | phrog_4950 | tail fiber protein | tail | 1 | 38292 | 38897 |
| YP_001522793.1 | NC_009935_p5 | hypothetical protein | phrog_6951 | unknown function | unknown function | 1 | 3313 | 3681 |
| YP_001522816.1 | NC_009935_p28 | hypothetical protein | phrog_801 | dATP / dGTP pyrophosphohydrolase | DNA, RNA and nucleotide metabolism | 1 | 18099 | 18467 |
| YP_001522800.1 | NC_009935_p12 | hypothetical protein | phrog_6982 | DNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 5883 | 6653 |
| YP_001522836.1 | NC_009935_p48 | Class II holin | phrog_6597 | holin | lysis | 1 | 41014 | 41214 |
| YP_001522839.1 | NC_009935_p51 | Rz1-like protein | phrog_456 | Rz-like spanin | lysis | 1 | 41868 | 42068 |