Genomic map of Pseudomonas phage LKA1 (NC_009936)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_009936
Definition
Pseudomonas phage LKA1, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Autographiviridae; Krylovirinae; Stubburvirus.
DB of origin
REFSEQ
Length
41593
Host Name
Pseudomonas aeruginosa
Host domain
Bacteria
Is prophage?
undef
Number of proteins
57
%GC
60.9
Number of singletons
25
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_001522848.1 NC_009936_p7 hypothetical protein phrog_7806 unknown function unknown function 1 3662 4228
YP_001522842.1 NC_009936_p1 hypothetical protein phrog_17580 unknown function unknown function 1 990 1142
YP_001522862.1 NC_009936_p21 hypothetical protein singleton unknown function unknown function 1 8959 9141
YP_001522854.1 NC_009936_p13 hypothetical protein singleton unknown function unknown function 1 5409 5792
YP_001522892.1 NC_009936_p52 DNA maturase B phrog_38 terminase large subunit head and packaging 1 37908 39695
YP_001522897.1 NC_009936_p57 structural protein phrog_9732 unknown function unknown function 1 40859 41182
YP_001522845.1 NC_009936_p4 hypothetical protein phrog_1448 unknown function unknown function 1 2036 2515
YP_001522856.1 NC_009936_p15 hypothetical protein singleton unknown function unknown function 1 6055 6234
YP_001522884.1 NC_009936_p44 capsid protein phrog_267 major head protein head and packaging 1 25079 26083
YP_001522886.1 NC_009936_p46 tail tubular protein B phrog_457 tail protein tail 1 26735 29068
YP_001522876.1 NC_009936_p36 hypothetical protein phrog_5033 endolysin; inhibits RNA polymerase lysis 1 18691 19197
YP_001522877.1 NC_009936_p37 hypothetical protein singleton unknown function unknown function 1 19190 19381
YP_001522847.1 NC_009936_p6 hypothetical protein phrog_35632 unknown function unknown function 1 3308 3616
YP_001522850.1 NC_009936_p9 hypothetical protein singleton unknown function unknown function 1 4412 4696
YP_001522863.1 NC_009936_p22 hypothetical protein singleton unknown function unknown function 1 9138 9347
YP_001522881.1 NC_009936_p41 structural protein phrog_3112 virion structural protein head and packaging 1 22447 22746
YP_001522887.1 NC_009936_p47 internal virion protein phrog_805 internal virion protein head and packaging 1 29068 29697
YP_001522852.1 NC_009936_p11 hypothetical protein singleton unknown function unknown function 1 4863 5168
YP_001522888.1 NC_009936_p48 C-terminus lysozyme motif internal virion protein phrog_2083 internal virion lysozyme motif head and packaging 1 29707 32271
YP_001522870.1 NC_009936_p29 DNA polymerase phrog_17 DNA polymerase DNA, RNA and nucleotide metabolism 1 12586 14961
YP_001522889.1 NC_009936_p49 internal virion protein phrog_342 internal virion protein with endolysin domain head and packaging 1 32282 35293
YP_001522867.1 NC_009936_p26 hypothetical protein phrog_15166 unknown function unknown function 1 10985 11407
YP_001522858.1 NC_009936_p17 hypothetical protein phrog_5433 unknown function unknown function 1 6521 6874
YP_001522885.1 NC_009936_p45 tail tubular protein A phrog_446 tail protein tail 1 26173 26808
YP_001522849.1 NC_009936_p8 hypothetical protein singleton unknown function unknown function 1 4225 4419
YP_001522869.1 NC_009936_p28 hypothetical protein singleton unknown function unknown function 1 12410 12589
YP_001522844.1 NC_009936_p3 hypothetical protein singleton unknown function unknown function 1 1840 2025
YP_001522875.1 NC_009936_p35 hypothetical protein phrog_403 DNA polymerase exonuclease subunit DNA, RNA and nucleotide metabolism 1 17679 18710
YP_001522878.1 NC_009936_p38 RNA polymerase phrog_414 RNA polymerase DNA, RNA and nucleotide metabolism 1 19391 21826
YP_001522859.1 NC_009936_p18 hypothetical protein singleton unknown function unknown function 1 6979 7428
YP_001522866.1 NC_009936_p25 hypothetical protein singleton unknown function unknown function 1 10798 10995
YP_001522846.1 NC_009936_p5 hypothetical protein singleton unknown function unknown function 1 2986 3306
YP_001522851.1 NC_009936_p10 hypothetical protein singleton unknown function unknown function 1 4620 4853
YP_001522860.1 NC_009936_p19 hypothetical protein singleton unknown function unknown function 1 7454 8368
YP_001522891.1 NC_009936_p51 DNA maturase A phrog_891 terminase small subunit head and packaging 1 37611 37904
YP_001522868.1 NC_009936_p27 DNA ligase phrog_114 ATP-dependent DNA ligase DNA, RNA and nucleotide metabolism 1 11397 12413
YP_001522855.1 NC_009936_p14 hypothetical protein singleton unknown function unknown function 1 5792 6055
YP_001522871.1 NC_009936_p31 hypothetical protein singleton unknown function unknown function 1 15152 15376
YP_001522896.1 NC_009936_p56 Rz1-like protein singleton unknown function unknown function 1 40650 40847
YP_001522895.1 NC_009936_p55 Rz-like protein phrog_214 Rz-like spanin lysis 1 40436 40726
YP_001522873.1 NC_009936_p33 DNA exonuclease phrog_107 exonuclease DNA, RNA and nucleotide metabolism 1 16314 17270
YP_001522882.1 NC_009936_p42 head-tail connector protein phrog_449 head-tail adaptor connector 1 22749 24293
YP_001522874.1 NC_009936_p34 DNA endonuclease phrog_423 endonuclease VII DNA, RNA and nucleotide metabolism 1 17254 17679
YP_001522880.1 NC_009936_p40 hypothetical protein phrog_3986 unknown function unknown function 1 22101 22478
YP_001522843.1 NC_009936_p2 hypothetical protein singleton unknown function unknown function 1 1571 1843
YP_009059066.1 NC_009936_p30 DNA Polymerase-binding protein singleton unknown function unknown function 1 14958 15155
YP_001522890.1 NC_009936_p50 tail fiber protein phrog_13768 tail protein tail 1 35299 37608
YP_001522864.1 NC_009936_p23 DNA helicase phrog_19 DnaB-like replicative helicase DNA, RNA and nucleotide metabolism 1 9340 10605
YP_001522865.1 NC_009936_p24 hypothetical protein singleton unknown function unknown function 1 10616 10801
YP_001522861.1 NC_009936_p20 DNA primase phrog_47 DNA primase DNA, RNA and nucleotide metabolism 1 8175 8978
YP_001522879.1 NC_009936_p39 hypothetical protein singleton unknown function unknown function 1 21857 22087
YP_001522893.1 NC_009936_p53 Class II holin singleton unknown function unknown function 1 39692 39895
YP_001522894.1 NC_009936_p54 lysozyme phrog_7 endolysin lysis 1 39888 40439
YP_001522853.1 NC_009936_p12 hypothetical protein singleton unknown function unknown function 1 5155 5412
YP_001522883.1 NC_009936_p43 scaffolding protein phrog_1018 head scaffolding protein head and packaging 1 24290 25066
YP_001522857.1 NC_009936_p16 hypothetical protein singleton unknown function unknown function 1 6231 6434
YP_001522872.1 NC_009936_p32 hypothetical protein phrog_862 unknown function unknown function 1 15373 16317