| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_009936 |
Definition |
Pseudomonas phage LKA1, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Autographiviridae; Krylovirinae; Stubburvirus. |
DB of origin |
REFSEQ |
Length |
41593 |
Host Name |
Pseudomonas aeruginosa |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
57 |
%GC |
60.9 |
Number of singletons |
25 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_001522848.1 | NC_009936_p7 | hypothetical protein | phrog_7806 | unknown function | unknown function | 1 | 3662 | 4228 |
| YP_001522842.1 | NC_009936_p1 | hypothetical protein | phrog_17580 | unknown function | unknown function | 1 | 990 | 1142 |
| YP_001522862.1 | NC_009936_p21 | hypothetical protein | singleton | unknown function | unknown function | 1 | 8959 | 9141 |
| YP_001522854.1 | NC_009936_p13 | hypothetical protein | singleton | unknown function | unknown function | 1 | 5409 | 5792 |
| YP_001522892.1 | NC_009936_p52 | DNA maturase B | phrog_38 | terminase large subunit | head and packaging | 1 | 37908 | 39695 |
| YP_001522897.1 | NC_009936_p57 | structural protein | phrog_9732 | unknown function | unknown function | 1 | 40859 | 41182 |
| YP_001522845.1 | NC_009936_p4 | hypothetical protein | phrog_1448 | unknown function | unknown function | 1 | 2036 | 2515 |
| YP_001522856.1 | NC_009936_p15 | hypothetical protein | singleton | unknown function | unknown function | 1 | 6055 | 6234 |
| YP_001522884.1 | NC_009936_p44 | capsid protein | phrog_267 | major head protein | head and packaging | 1 | 25079 | 26083 |
| YP_001522886.1 | NC_009936_p46 | tail tubular protein B | phrog_457 | tail protein | tail | 1 | 26735 | 29068 |
| YP_001522876.1 | NC_009936_p36 | hypothetical protein | phrog_5033 | endolysin; inhibits RNA polymerase | lysis | 1 | 18691 | 19197 |
| YP_001522877.1 | NC_009936_p37 | hypothetical protein | singleton | unknown function | unknown function | 1 | 19190 | 19381 |
| YP_001522847.1 | NC_009936_p6 | hypothetical protein | phrog_35632 | unknown function | unknown function | 1 | 3308 | 3616 |
| YP_001522850.1 | NC_009936_p9 | hypothetical protein | singleton | unknown function | unknown function | 1 | 4412 | 4696 |
| YP_001522863.1 | NC_009936_p22 | hypothetical protein | singleton | unknown function | unknown function | 1 | 9138 | 9347 |
| YP_001522881.1 | NC_009936_p41 | structural protein | phrog_3112 | virion structural protein | head and packaging | 1 | 22447 | 22746 |
| YP_001522887.1 | NC_009936_p47 | internal virion protein | phrog_805 | internal virion protein | head and packaging | 1 | 29068 | 29697 |
| YP_001522852.1 | NC_009936_p11 | hypothetical protein | singleton | unknown function | unknown function | 1 | 4863 | 5168 |
| YP_001522888.1 | NC_009936_p48 | C-terminus lysozyme motif internal virion protein | phrog_2083 | internal virion lysozyme motif | head and packaging | 1 | 29707 | 32271 |
| YP_001522870.1 | NC_009936_p29 | DNA polymerase | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 12586 | 14961 |
| YP_001522889.1 | NC_009936_p49 | internal virion protein | phrog_342 | internal virion protein with endolysin domain | head and packaging | 1 | 32282 | 35293 |
| YP_001522867.1 | NC_009936_p26 | hypothetical protein | phrog_15166 | unknown function | unknown function | 1 | 10985 | 11407 |
| YP_001522858.1 | NC_009936_p17 | hypothetical protein | phrog_5433 | unknown function | unknown function | 1 | 6521 | 6874 |
| YP_001522885.1 | NC_009936_p45 | tail tubular protein A | phrog_446 | tail protein | tail | 1 | 26173 | 26808 |
| YP_001522849.1 | NC_009936_p8 | hypothetical protein | singleton | unknown function | unknown function | 1 | 4225 | 4419 |
| YP_001522869.1 | NC_009936_p28 | hypothetical protein | singleton | unknown function | unknown function | 1 | 12410 | 12589 |
| YP_001522844.1 | NC_009936_p3 | hypothetical protein | singleton | unknown function | unknown function | 1 | 1840 | 2025 |
| YP_001522875.1 | NC_009936_p35 | hypothetical protein | phrog_403 | DNA polymerase exonuclease subunit | DNA, RNA and nucleotide metabolism | 1 | 17679 | 18710 |
| YP_001522878.1 | NC_009936_p38 | RNA polymerase | phrog_414 | RNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 19391 | 21826 |
| YP_001522859.1 | NC_009936_p18 | hypothetical protein | singleton | unknown function | unknown function | 1 | 6979 | 7428 |
| YP_001522866.1 | NC_009936_p25 | hypothetical protein | singleton | unknown function | unknown function | 1 | 10798 | 10995 |
| YP_001522846.1 | NC_009936_p5 | hypothetical protein | singleton | unknown function | unknown function | 1 | 2986 | 3306 |
| YP_001522851.1 | NC_009936_p10 | hypothetical protein | singleton | unknown function | unknown function | 1 | 4620 | 4853 |
| YP_001522860.1 | NC_009936_p19 | hypothetical protein | singleton | unknown function | unknown function | 1 | 7454 | 8368 |
| YP_001522891.1 | NC_009936_p51 | DNA maturase A | phrog_891 | terminase small subunit | head and packaging | 1 | 37611 | 37904 |
| YP_001522868.1 | NC_009936_p27 | DNA ligase | phrog_114 | ATP-dependent DNA ligase | DNA, RNA and nucleotide metabolism | 1 | 11397 | 12413 |
| YP_001522855.1 | NC_009936_p14 | hypothetical protein | singleton | unknown function | unknown function | 1 | 5792 | 6055 |
| YP_001522871.1 | NC_009936_p31 | hypothetical protein | singleton | unknown function | unknown function | 1 | 15152 | 15376 |
| YP_001522896.1 | NC_009936_p56 | Rz1-like protein | singleton | unknown function | unknown function | 1 | 40650 | 40847 |
| YP_001522895.1 | NC_009936_p55 | Rz-like protein | phrog_214 | Rz-like spanin | lysis | 1 | 40436 | 40726 |
| YP_001522873.1 | NC_009936_p33 | DNA exonuclease | phrog_107 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 16314 | 17270 |
| YP_001522882.1 | NC_009936_p42 | head-tail connector protein | phrog_449 | head-tail adaptor | connector | 1 | 22749 | 24293 |
| YP_001522874.1 | NC_009936_p34 | DNA endonuclease | phrog_423 | endonuclease VII | DNA, RNA and nucleotide metabolism | 1 | 17254 | 17679 |
| YP_001522880.1 | NC_009936_p40 | hypothetical protein | phrog_3986 | unknown function | unknown function | 1 | 22101 | 22478 |
| YP_001522843.1 | NC_009936_p2 | hypothetical protein | singleton | unknown function | unknown function | 1 | 1571 | 1843 |
| YP_009059066.1 | NC_009936_p30 | DNA Polymerase-binding protein | singleton | unknown function | unknown function | 1 | 14958 | 15155 |
| YP_001522890.1 | NC_009936_p50 | tail fiber protein | phrog_13768 | tail protein | tail | 1 | 35299 | 37608 |
| YP_001522864.1 | NC_009936_p23 | DNA helicase | phrog_19 | DnaB-like replicative helicase | DNA, RNA and nucleotide metabolism | 1 | 9340 | 10605 |
| YP_001522865.1 | NC_009936_p24 | hypothetical protein | singleton | unknown function | unknown function | 1 | 10616 | 10801 |
| YP_001522861.1 | NC_009936_p20 | DNA primase | phrog_47 | DNA primase | DNA, RNA and nucleotide metabolism | 1 | 8175 | 8978 |
| YP_001522879.1 | NC_009936_p39 | hypothetical protein | singleton | unknown function | unknown function | 1 | 21857 | 22087 |
| YP_001522893.1 | NC_009936_p53 | Class II holin | singleton | unknown function | unknown function | 1 | 39692 | 39895 |
| YP_001522894.1 | NC_009936_p54 | lysozyme | phrog_7 | endolysin | lysis | 1 | 39888 | 40439 |
| YP_001522853.1 | NC_009936_p12 | hypothetical protein | singleton | unknown function | unknown function | 1 | 5155 | 5412 |
| YP_001522883.1 | NC_009936_p43 | scaffolding protein | phrog_1018 | head scaffolding protein | head and packaging | 1 | 24290 | 25066 |
| YP_001522857.1 | NC_009936_p16 | hypothetical protein | singleton | unknown function | unknown function | 1 | 6231 | 6434 |
| YP_001522872.1 | NC_009936_p32 | hypothetical protein | phrog_862 | unknown function | unknown function | 1 | 15373 | 16317 |