| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_009993 |
Definition |
Mycobacterium phage Giles, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Gilesvirus. |
DB of origin |
REFSEQ |
Length |
53746 |
Host Name |
Mycobacterium smegmatis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
77 |
%GC |
67.44 |
Number of singletons |
1 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_001552403.1 | NC_009993_p73 | hypothetical protein | phrog_31102 | unknown function | unknown function | 1 | 51154 | 51564 |
| YP_001552331.1 | NC_009993_p2 | hypothetical protein | phrog_36626 | unknown function | unknown function | -1 | 630 | 800 |
| YP_001552400.1 | NC_009993_p70 | hypothetical protein | phrog_18038 | unknown function | unknown function | 1 | 49933 | 50319 |
| YP_001552350.1 | NC_009993_p21 | virion protein | phrog_106 | minor tail protein | tail | 1 | 16315 | 17409 |
| YP_001552398.1 | NC_009993_p68 | hypothetical protein | phrog_18663 | unknown function | unknown function | 1 | 49185 | 49526 |
| YP_001552385.1 | NC_009993_p55 | hypothetical protein | phrog_25539 | unknown function | unknown function | 1 | 41760 | 42338 |
| YP_001552379.1 | NC_009993_p49 | hypothetical protein | phrog_28168 | unknown function | unknown function | 1 | 37454 | 37819 |
| YP_001552388.1 | NC_009993_p58 | hypothetical protein | phrog_18585 | unknown function | unknown function | 1 | 43212 | 43631 |
| YP_001552364.1 | NC_009993_p35 | hypothetical protein | phrog_798 | unknown function | unknown function | 1 | 30329 | 30949 |
| YP_001552342.1 | NC_009993_p13 | hypothetical protein | phrog_31131 | unknown function | unknown function | 1 | 9121 | 9528 |
| YP_001552404.2 | NC_009993_p74 | hypothetical protein | singleton | unknown function | unknown function | 1 | 52251 | 52598 |
| YP_001552387.1 | NC_009993_p57 | hypothetical protein | phrog_29159 | unknown function | unknown function | 1 | 42904 | 43215 |
| YP_001552381.1 | NC_009993_p51 | RecE-like protein | phrog_434 | RecE-like recombination exonuclease | DNA, RNA and nucleotide metabolism | 1 | 38780 | 39871 |
| YP_001552389.1 | NC_009993_p59 | hypothetical protein | phrog_6554 | unknown function | unknown function | 1 | 43624 | 43962 |
| YP_001552360.1 | NC_009993_p31 | lysin A | phrog_880 | endolysin | lysis | 1 | 27131 | 28339 |
| YP_001552383.1 | NC_009993_p53 | hypothetical protein | phrog_6734 | unknown function | unknown function | 1 | 41313 | 41453 |
| YP_001552392.1 | NC_009993_p62 | hypothetical protein | phrog_1882 | unknown function | unknown function | 1 | 45667 | 46746 |
| YP_001552401.1 | NC_009993_p71 | hypothetical protein | phrog_33233 | unknown function | unknown function | 1 | 50316 | 50672 |
| YP_001552346.1 | NC_009993_p17 | hypothetical protein | phrog_15731 | tail assembly chaperone | tail | 1 | 10893 | 11789 |
| YP_001552366.1 | NC_009993_p37 | hypothetical protein | phrog_38603 | unknown function | unknown function | 1 | 31742 | 31894 |
| YP_001552344.1 | NC_009993_p15 | hypothetical protein | phrog_117 | major tail protein | tail | 1 | 9938 | 10477 |
| YP_001552349.1 | NC_009993_p20 | tapemeasure protein | phrog_9228 | tail length tape measure protein | tail | 1 | 12222 | 16301 |
| YP_001552361.1 | NC_009993_p32 | lysin B | phrog_102 | endolysin | lysis | 1 | 28339 | 29574 |
| YP_001552367.1 | NC_009993_p38 | hypothetical protein | phrog_37168 | unknown function | unknown function | -1 | 31891 | 32046 |
| YP_001552391.1 | NC_009993_p61 | DNA methylase | phrog_67 | DNA methyltransferase | other | 1 | 44916 | 45578 |
| YP_001552397.1 | NC_009993_p67 | WhiB-like protein | phrog_472 | WhiB transcriptional factor | transcription regulation | 1 | 48849 | 49157 |
| YP_001552394.1 | NC_009993_p64 | hypothetical protein | phrog_31969 | unknown function | unknown function | 1 | 47237 | 47650 |
| YP_001552384.1 | NC_009993_p54 | hypothetical protein | phrog_33897 | unknown function | unknown function | 1 | 41450 | 41767 |
| YP_001552380.1 | NC_009993_p50 | hypothetical protein | phrog_1590 | unknown function | unknown function | 1 | 37891 | 38754 |
| YP_001552376.1 | NC_009993_p47 | hypothetical protein | phrog_34968 | unknown function | unknown function | -1 | 36188 | 36604 |
| YP_001552390.1 | NC_009993_p60 | hypothetical protein | phrog_192 | DNA polymerase exonuclease subunit | DNA, RNA and nucleotide metabolism | 1 | 43959 | 44513 |
| YP_001552405.1 | NC_009993_p75 | hypothetical protein | phrog_1808 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 52603 | 52992 |
| YP_001552339.1 | NC_009993_p10 | virion protein | phrog_2322 | head-tail connector protein | connector | 1 | 7539 | 7979 |
| YP_001552368.1 | NC_009993_p39 | hypothetical protein | phrog_27984 | unknown function | unknown function | -1 | 32112 | 32336 |
| YP_001552352.1 | NC_009993_p23 | hypothetical protein | phrog_13217 | minor tail protein | tail | 1 | 19148 | 19753 |
| YP_001552333.1 | NC_009993_p4 | hypothetical protein | phrog_1318 | unknown function | unknown function | -1 | 1617 | 1826 |
| YP_001552358.1 | NC_009993_p29 | integrase | phrog_1 | integrase | integration and excision | -1 | 25285 | 26478 |
| YP_001552340.1 | NC_009993_p11 | hypothetical protein | phrog_137 | head-tail adaptor Ad1 | connector | 1 | 7983 | 8435 |
| YP_001552399.1 | NC_009993_p69 | hypothetical protein | phrog_3848 | unknown function | unknown function | 1 | 49523 | 49936 |
| YP_001552374.1 | NC_009993_p45 | hypothetical protein | phrog_2761 | unknown function | unknown function | -1 | 34736 | 35041 |
| YP_001552386.1 | NC_009993_p56 | hypothetical protein | phrog_32877 | unknown function | unknown function | 1 | 42335 | 42907 |
| YP_001552338.1 | NC_009993_p9 | capsid subunit | phrog_1650 | major head protein | head and packaging | 1 | 6586 | 7542 |
| YP_001552355.1 | NC_009993_p26 | hypothetical protein | phrog_2235 | minor tail protein | tail | 1 | 23120 | 23365 |
| YP_001552354.1 | NC_009993_p25 | virion protein | phrog_3493 | minor tail protein | tail | 1 | 20853 | 23117 |
| YP_001552362.1 | NC_009993_p33 | hypothetical protein | phrog_565 | holin | lysis | 1 | 29596 | 30006 |
| YP_001552336.1 | NC_009993_p7 | protease | phrog_2976 | head maturation protease | head and packaging | 1 | 4908 | 6098 |
| YP_001552356.1 | NC_009993_p27 | virion protein | phrog_416 | minor tail protein | tail | 1 | 23371 | 24609 |
| YP_001552334.1 | NC_009993_p5 | terminase | phrog_9 | terminase large subunit | head and packaging | 1 | 1855 | 3489 |
| YP_001552369.1 | NC_009993_p40 | hypothetical protein | phrog_33446 | unknown function | unknown function | -1 | 32333 | 32707 |
| YP_001552365.1 | NC_009993_p36 | virion protein | phrog_11690 | tail protein | tail | 1 | 30952 | 31740 |
| YP_001552370.1 | NC_009993_p41 | hypothetical protein | phrog_549 | unknown function | unknown function | -1 | 32891 | 33316 |
| YP_001552347.1 | NC_009993_p18 | hypothetical protein | phrog_27289 | unknown function | unknown function | 1 | 11827 | 12069 |
| YP_001552345.1 | NC_009993_p16 | virion protein | phrog_37321 | unknown function | unknown function | 1 | 10511 | 10915 |
| YP_001552393.1 | NC_009993_p63 | hypothetical protein | phrog_33769 | unknown function | unknown function | 1 | 46743 | 47240 |
| YP_001552351.1 | NC_009993_p22 | virion protein | phrog_110 | minor tail protein | tail | 1 | 17406 | 19148 |
| YP_001552402.1 | NC_009993_p72 | hypothetical protein | phrog_29205 | unknown function | unknown function | 1 | 50669 | 51157 |
| YP_001552406.1 | NC_009993_p76 | hypothetical protein | phrog_32051 | unknown function | unknown function | 1 | 52989 | 53147 |
| YP_001552363.1 | NC_009993_p34 | hypothetical protein | phrog_1177 | unknown function | unknown function | 1 | 30016 | 30336 |
| YP_001552407.1 | NC_009993_p77 | hypothetical protein | phrog_32490 | unknown function | unknown function | 1 | 53248 | 53613 |
| YP_001552332.1 | NC_009993_p3 | hypothetical protein | phrog_31632 | unknown function | unknown function | -1 | 930 | 1553 |
| YP_001552335.1 | NC_009993_p6 | probably portal | phrog_113 | portal protein | head and packaging | 1 | 3506 | 4915 |
| YP_001552371.1 | NC_009993_p42 | hypothetical protein | phrog_4095 | unknown function | unknown function | -1 | 33425 | 34126 |
| YP_001552357.1 | NC_009993_p28 | hypothetical protein | phrog_240 | head protein | head and packaging | 1 | 24633 | 24989 |
| YP_001552373.1 | NC_009993_p44 | hypothetical protein | phrog_31194 | unknown function | unknown function | -1 | 34419 | 34724 |
| YP_001552372.1 | NC_009993_p43 | hypothetical protein | phrog_29593 | unknown function | unknown function | -1 | 34195 | 34422 |
| YP_001552396.1 | NC_009993_p66 | hypothetical protein | phrog_159 | RuvC-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 48164 | 48856 |
| YP_001552337.1 | NC_009993_p8 | hypothetical protein | phrog_673 | head scaffolding protein | head and packaging | 1 | 6100 | 6552 |
| YP_001552375.1 | NC_009993_p46 | hypothetical protein | phrog_30295 | unknown function | unknown function | -1 | 35107 | 36063 |
| YP_001552353.1 | NC_009993_p24 | virion protein | phrog_1565 | minor tail protein | tail | 1 | 19750 | 20853 |
| YP_001552382.1 | NC_009993_p52 | RecT-like protein | phrog_4171 | RecT-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 39868 | 41316 |
| YP_001552341.1 | NC_009993_p12 | virion protein | phrog_18149 | head closure Hc1 | connector | 1 | 8435 | 9118 |
| YP_001552348.1 | NC_009993_p19 | hypothetical protein | phrog_29514 | unknown function | unknown function | 1 | 12071 | 12229 |
| YP_001552359.2 | NC_009993_p30 | excise | phrog_66 | excisionase and transcriptional regulator | integration and excision | 1 | 26649 | 26822 |
| YP_001552343.1 | NC_009993_p14 | hypothetical protein | phrog_6485 | tail terminator | connector | 1 | 9521 | 9922 |
| YP_001552330.1 | NC_009993_p1 | hypothetical protein | phrog_26270 | terminase small subunit | head and packaging | 1 | 14 | 571 |
| YP_001552395.1 | NC_009993_p65 | hypothetical protein | phrog_33633 | unknown function | unknown function | 1 | 47647 | 48102 |
| YP_001552378.1 | NC_009993_p48 | hypothetical protein | phrog_35547 | unknown function | unknown function | 1 | 37143 | 37457 |