Genomic map of Mycobacterium phage Giles (NC_009993)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_009993
Definition
Mycobacterium phage Giles, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Gilesvirus.
DB of origin
REFSEQ
Length
53746
Host Name
Mycobacterium smegmatis
Host domain
Bacteria
Is prophage?
undef
Number of proteins
77
%GC
67.44
Number of singletons
1
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_001552403.1 NC_009993_p73 hypothetical protein phrog_31102 unknown function unknown function 1 51154 51564
YP_001552331.1 NC_009993_p2 hypothetical protein phrog_36626 unknown function unknown function -1 630 800
YP_001552400.1 NC_009993_p70 hypothetical protein phrog_18038 unknown function unknown function 1 49933 50319
YP_001552350.1 NC_009993_p21 virion protein phrog_106 minor tail protein tail 1 16315 17409
YP_001552398.1 NC_009993_p68 hypothetical protein phrog_18663 unknown function unknown function 1 49185 49526
YP_001552385.1 NC_009993_p55 hypothetical protein phrog_25539 unknown function unknown function 1 41760 42338
YP_001552379.1 NC_009993_p49 hypothetical protein phrog_28168 unknown function unknown function 1 37454 37819
YP_001552388.1 NC_009993_p58 hypothetical protein phrog_18585 unknown function unknown function 1 43212 43631
YP_001552364.1 NC_009993_p35 hypothetical protein phrog_798 unknown function unknown function 1 30329 30949
YP_001552342.1 NC_009993_p13 hypothetical protein phrog_31131 unknown function unknown function 1 9121 9528
YP_001552404.2 NC_009993_p74 hypothetical protein singleton unknown function unknown function 1 52251 52598
YP_001552387.1 NC_009993_p57 hypothetical protein phrog_29159 unknown function unknown function 1 42904 43215
YP_001552381.1 NC_009993_p51 RecE-like protein phrog_434 RecE-like recombination exonuclease DNA, RNA and nucleotide metabolism 1 38780 39871
YP_001552389.1 NC_009993_p59 hypothetical protein phrog_6554 unknown function unknown function 1 43624 43962
YP_001552360.1 NC_009993_p31 lysin A phrog_880 endolysin lysis 1 27131 28339
YP_001552383.1 NC_009993_p53 hypothetical protein phrog_6734 unknown function unknown function 1 41313 41453
YP_001552392.1 NC_009993_p62 hypothetical protein phrog_1882 unknown function unknown function 1 45667 46746
YP_001552401.1 NC_009993_p71 hypothetical protein phrog_33233 unknown function unknown function 1 50316 50672
YP_001552346.1 NC_009993_p17 hypothetical protein phrog_15731 tail assembly chaperone tail 1 10893 11789
YP_001552366.1 NC_009993_p37 hypothetical protein phrog_38603 unknown function unknown function 1 31742 31894
YP_001552344.1 NC_009993_p15 hypothetical protein phrog_117 major tail protein tail 1 9938 10477
YP_001552349.1 NC_009993_p20 tapemeasure protein phrog_9228 tail length tape measure protein tail 1 12222 16301
YP_001552361.1 NC_009993_p32 lysin B phrog_102 endolysin lysis 1 28339 29574
YP_001552367.1 NC_009993_p38 hypothetical protein phrog_37168 unknown function unknown function -1 31891 32046
YP_001552391.1 NC_009993_p61 DNA methylase phrog_67 DNA methyltransferase other 1 44916 45578
YP_001552397.1 NC_009993_p67 WhiB-like protein phrog_472 WhiB transcriptional factor transcription regulation 1 48849 49157
YP_001552394.1 NC_009993_p64 hypothetical protein phrog_31969 unknown function unknown function 1 47237 47650
YP_001552384.1 NC_009993_p54 hypothetical protein phrog_33897 unknown function unknown function 1 41450 41767
YP_001552380.1 NC_009993_p50 hypothetical protein phrog_1590 unknown function unknown function 1 37891 38754
YP_001552376.1 NC_009993_p47 hypothetical protein phrog_34968 unknown function unknown function -1 36188 36604
YP_001552390.1 NC_009993_p60 hypothetical protein phrog_192 DNA polymerase exonuclease subunit DNA, RNA and nucleotide metabolism 1 43959 44513
YP_001552405.1 NC_009993_p75 hypothetical protein phrog_1808 HNH endonuclease DNA, RNA and nucleotide metabolism 1 52603 52992
YP_001552339.1 NC_009993_p10 virion protein phrog_2322 head-tail connector protein connector 1 7539 7979
YP_001552368.1 NC_009993_p39 hypothetical protein phrog_27984 unknown function unknown function -1 32112 32336
YP_001552352.1 NC_009993_p23 hypothetical protein phrog_13217 minor tail protein tail 1 19148 19753
YP_001552333.1 NC_009993_p4 hypothetical protein phrog_1318 unknown function unknown function -1 1617 1826
YP_001552358.1 NC_009993_p29 integrase phrog_1 integrase integration and excision -1 25285 26478
YP_001552340.1 NC_009993_p11 hypothetical protein phrog_137 head-tail adaptor Ad1 connector 1 7983 8435
YP_001552399.1 NC_009993_p69 hypothetical protein phrog_3848 unknown function unknown function 1 49523 49936
YP_001552374.1 NC_009993_p45 hypothetical protein phrog_2761 unknown function unknown function -1 34736 35041
YP_001552386.1 NC_009993_p56 hypothetical protein phrog_32877 unknown function unknown function 1 42335 42907
YP_001552338.1 NC_009993_p9 capsid subunit phrog_1650 major head protein head and packaging 1 6586 7542
YP_001552355.1 NC_009993_p26 hypothetical protein phrog_2235 minor tail protein tail 1 23120 23365
YP_001552354.1 NC_009993_p25 virion protein phrog_3493 minor tail protein tail 1 20853 23117
YP_001552362.1 NC_009993_p33 hypothetical protein phrog_565 holin lysis 1 29596 30006
YP_001552336.1 NC_009993_p7 protease phrog_2976 head maturation protease head and packaging 1 4908 6098
YP_001552356.1 NC_009993_p27 virion protein phrog_416 minor tail protein tail 1 23371 24609
YP_001552334.1 NC_009993_p5 terminase phrog_9 terminase large subunit head and packaging 1 1855 3489
YP_001552369.1 NC_009993_p40 hypothetical protein phrog_33446 unknown function unknown function -1 32333 32707
YP_001552365.1 NC_009993_p36 virion protein phrog_11690 tail protein tail 1 30952 31740
YP_001552370.1 NC_009993_p41 hypothetical protein phrog_549 unknown function unknown function -1 32891 33316
YP_001552347.1 NC_009993_p18 hypothetical protein phrog_27289 unknown function unknown function 1 11827 12069
YP_001552345.1 NC_009993_p16 virion protein phrog_37321 unknown function unknown function 1 10511 10915
YP_001552393.1 NC_009993_p63 hypothetical protein phrog_33769 unknown function unknown function 1 46743 47240
YP_001552351.1 NC_009993_p22 virion protein phrog_110 minor tail protein tail 1 17406 19148
YP_001552402.1 NC_009993_p72 hypothetical protein phrog_29205 unknown function unknown function 1 50669 51157
YP_001552406.1 NC_009993_p76 hypothetical protein phrog_32051 unknown function unknown function 1 52989 53147
YP_001552363.1 NC_009993_p34 hypothetical protein phrog_1177 unknown function unknown function 1 30016 30336
YP_001552407.1 NC_009993_p77 hypothetical protein phrog_32490 unknown function unknown function 1 53248 53613
YP_001552332.1 NC_009993_p3 hypothetical protein phrog_31632 unknown function unknown function -1 930 1553
YP_001552335.1 NC_009993_p6 probably portal phrog_113 portal protein head and packaging 1 3506 4915
YP_001552371.1 NC_009993_p42 hypothetical protein phrog_4095 unknown function unknown function -1 33425 34126
YP_001552357.1 NC_009993_p28 hypothetical protein phrog_240 head protein head and packaging 1 24633 24989
YP_001552373.1 NC_009993_p44 hypothetical protein phrog_31194 unknown function unknown function -1 34419 34724
YP_001552372.1 NC_009993_p43 hypothetical protein phrog_29593 unknown function unknown function -1 34195 34422
YP_001552396.1 NC_009993_p66 hypothetical protein phrog_159 RuvC-like Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 48164 48856
YP_001552337.1 NC_009993_p8 hypothetical protein phrog_673 head scaffolding protein head and packaging 1 6100 6552
YP_001552375.1 NC_009993_p46 hypothetical protein phrog_30295 unknown function unknown function -1 35107 36063
YP_001552353.1 NC_009993_p24 virion protein phrog_1565 minor tail protein tail 1 19750 20853
YP_001552382.1 NC_009993_p52 RecT-like protein phrog_4171 RecT-like ssDNA annealing protein DNA, RNA and nucleotide metabolism 1 39868 41316
YP_001552341.1 NC_009993_p12 virion protein phrog_18149 head closure Hc1 connector 1 8435 9118
YP_001552348.1 NC_009993_p19 hypothetical protein phrog_29514 unknown function unknown function 1 12071 12229
YP_001552359.2 NC_009993_p30 excise phrog_66 excisionase and transcriptional regulator integration and excision 1 26649 26822
YP_001552343.1 NC_009993_p14 hypothetical protein phrog_6485 tail terminator connector 1 9521 9922
YP_001552330.1 NC_009993_p1 hypothetical protein phrog_26270 terminase small subunit head and packaging 1 14 571
YP_001552395.1 NC_009993_p65 hypothetical protein phrog_33633 unknown function unknown function 1 47647 48102
YP_001552378.1 NC_009993_p48 hypothetical protein phrog_35547 unknown function unknown function 1 37143 37457