Genomic map of Pseudomonas phage YuA (NC_010116)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_010116
Definition
Pseudomonas phage YuA, complete genome.
Molecule type
DNA
Genome structure
circular
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Yuavirus.
DB of origin
REFSEQ
Length
58663
Host Name
Pseudomonas aeruginosa
Host domain
Bacteria
Is prophage?
undef
Number of proteins
77
%GC
64.26
Number of singletons
1
Number of paralogs
1

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_001595841.1 NC_010116_p18 hypothetical protein phrog_6047 unknown function unknown function 1 15360 15956
YP_001595839.1 NC_010116_p16 hypothetical protein phrog_19970 unknown function unknown function 1 14202 14315
YP_001595871.1 NC_010116_p48 hypothetical protein phrog_21134 unknown function unknown function 1 32197 32601
YP_001595878.1 NC_010116_p55 structural phage protein phrog_206 head scaffolding protein head and packaging 1 38543 39325
YP_001595843.1 NC_010116_p20 hypothetical protein phrog_5839 unknown function unknown function 1 16148 16513
YP_001595855.1 NC_010116_p32 hypothetical protein phrog_9147 unknown function unknown function 1 24957 25562
YP_001595848.1 NC_010116_p25 hypothetical protein phrog_3 transcriptional repressor transcription regulation 1 19624 19950
YP_001595846.1 NC_010116_p23 hypothetical protein phrog_174 dCMP deaminase DNA, RNA and nucleotide metabolism 1 18787 19248
YP_001595875.1 NC_010116_p52 structural phage protein phrog_145 portal protein head and packaging 1 35631 37154
YP_001595840.1 NC_010116_p17 hypothetical protein phrog_5131 thymidylate synthase DNA, RNA and nucleotide metabolism 1 14312 15367
YP_001595870.1 NC_010116_p47 hypothetical protein phrog_8760 unknown function unknown function 1 31988 32200
YP_001595830.1 NC_010116_p7 hypothetical protein phrog_84 ribonucleoside-diphosphate reductase large subunit DNA, RNA and nucleotide metabolism 1 5918 7660
YP_001595881.1 NC_010116_p58 hypothetical protein phrog_6213 unknown function unknown function 1 41164 41769
YP_001595880.1 NC_010116_p57 structural phage protein phrog_15312 virion structural protein head and packaging 1 40627 41136
YP_001595864.1 NC_010116_p41 hypothetical protein phrog_255 exonuclease DNA, RNA and nucleotide metabolism 1 28277 28849
YP_001595883.1 NC_010116_p60 holin phrog_1327 Rz-like spanin lysis 1 41971 42540
YP_001595845.1 NC_010116_p22 hypothetical protein singleton unknown function unknown function 1 18593 18790
YP_001595876.1 NC_010116_p53 hypothetical protein phrog_9943 unknown function unknown function 1 37151 37282
YP_001595893.1 NC_010116_p70 structural phage protein phrog_687 structural protein head and packaging 1 50563 52086
YP_001595895.1 NC_010116_p72 structural phage protein phrog_1082 tail assembly protein tail 1 53097 54767
YP_001595853.1 NC_010116_p30 hypothetical protein phrog_9297 unknown function unknown function 1 24323 24661
YP_001595844.1 NC_010116_p21 hypothetical protein phrog_17 DNA polymerase DNA, RNA and nucleotide metabolism 1 16513 18507
YP_001595857.1 NC_010116_p34 hypothetical protein phrog_13330 unknown function unknown function 1 26032 26361
YP_001595889.1 NC_010116_p66 major structural phage protein phrog_290 minor tail protein tail 1 44955 46487
YP_001595877.1 NC_010116_p54 structural phage protein phrog_241 head morphogenesis head and packaging 1 37266 38474
YP_001595826.1 NC_010116_p3 hypothetical protein phrog_5888 unknown function unknown function 1 2542 2895
YP_001595868.1 NC_010116_p45 hypothetical protein phrog_10132 anti-restriction protein moron, auxiliary metabolic gene and host takeover 1 31147 31572
YP_001595863.1 NC_010116_p40 hypothetical protein phrog_5016 unknown function unknown function 1 27994 28275
YP_001595892.1 NC_010116_p69 structural phage protein phrog_3336 tail length tape measure protein tail 1 47731 50553
YP_001595833.1 NC_010116_p10 hypothetical protein phrog_6364 unknown function unknown function 1 8773 9648
YP_001595836.1 NC_010116_p13 hypothetical protein phrog_800 terminase small subunit head and packaging 1 12053 12616
YP_001595886.1 NC_010116_p63 structural phage protein phrog_477 head-tail adaptor Ad1 connector 1 43582 44100
YP_001595860.1 NC_010116_p37 hypothetical protein phrog_9190 unknown function unknown function 1 26971 27240
YP_001595900.1 NC_010116_p77 structural phage protein phrog_5363 unknown function unknown function 1 58178 58663
YP_001595894.1 NC_010116_p71 structural phage protein phrog_687 structural protein head and packaging 1 52100 53095
YP_001595891.1 NC_010116_p68 hypothetical protein phrog_169 tail completion or Neck1 protein connector 1 47282 47728
YP_001595859.1 NC_010116_p36 hypothetical protein phrog_9341 unknown function unknown function 1 26679 26966
YP_001595885.1 NC_010116_p62 bacteriophage lysis protein phrog_669 endolysin lysis 1 42857 43582
YP_001595825.1 NC_010116_p2 hypothetical protein phrog_62 DNA helicase DNA, RNA and nucleotide metabolism 1 840 2534
YP_001595887.1 NC_010116_p64 structural phage protein phrog_161 head closure Hc1 connector 1 44104 44472
YP_001595831.1 NC_010116_p8 hypothetical protein phrog_7790 unknown function unknown function 1 7806 8489
YP_001595827.1 NC_010116_p4 hypothetical protein phrog_2378 unknown function unknown function 1 2955 3500
YP_001595835.1 NC_010116_p12 hypothetical protein phrog_9252 DNA repair photolyase DNA, RNA and nucleotide metabolism 1 10556 11998
YP_001595842.1 NC_010116_p19 hypothetical protein phrog_14034 unknown function unknown function 1 15931 16158
YP_001595867.1 NC_010116_p44 hypothetical protein phrog_5594 unknown function unknown function 1 30614 31084
YP_001595869.1 NC_010116_p46 hypothetical protein phrog_10108 unknown function unknown function 1 31630 31965
YP_001595862.1 NC_010116_p39 hypothetical protein phrog_4301 unknown function unknown function 1 27380 27997
YP_001595858.1 NC_010116_p35 hypothetical protein phrog_8020 unknown function unknown function 1 26377 26676
YP_001595837.1 NC_010116_p14 hypothetical protein phrog_2396 unknown function unknown function 1 12616 13602
YP_001595832.1 NC_010116_p9 hypothetical protein phrog_4445 unknown function unknown function 1 8500 8763
YP_001595856.1 NC_010116_p33 hypothetical protein phrog_7569 unknown function unknown function 1 25559 26035
YP_001595834.1 NC_010116_p11 hypothetical protein phrog_7093 threonine dehydratase other 1 9650 10486
YP_001595865.1 NC_010116_p42 hypothetical protein phrog_8776 unknown function unknown function 1 29122 29742
YP_001595854.1 NC_010116_p31 hypothetical protein phrog_8938 unknown function unknown function 1 24685 24954
YP_001595882.1 NC_010116_p59 structural phage protein phrog_8884 unknown function unknown function 1 41797 41967
YP_001595852.1 NC_010116_p29 hypothetical protein phrog_8203 unknown function unknown function 1 23148 24326
YP_001595849.1 NC_010116_p26 hypothetical protein phrog_1829 DNA primase DNA, RNA and nucleotide metabolism 1 19963 22374
YP_001595890.1 NC_010116_p67 hypothetical protein phrog_313 Tail assembly chaperone tail 1 46550 47008
YP_001595879.1 NC_010116_p56 major structural phage protein phrog_212 major head protein head and packaging 1 39520 40452
YP_001595851.1 NC_010116_p28 hypothetical protein phrog_14626 unknown function unknown function 1 22746 23111
YP_001595850.1 NC_010116_p27 hypothetical protein phrog_2053 unknown function unknown function 1 22419 22634
YP_001595847.1 NC_010116_p24 hypothetical protein phrog_2165 DNA helicase DNA, RNA and nucleotide metabolism 1 19256 19639
YP_001595838.1 NC_010116_p15 hypothetical protein phrog_1965 unknown function unknown function 1 13629 14189
YP_001595829.1 NC_010116_p6 hypothetical protein phrog_325 Dda-like helicase DNA, RNA and nucleotide metabolism 1 4583 5776
YP_001595899.1 NC_010116_p76 structural phage protein phrog_1101 tail protein tail 1 56106 58178
YP_001595824.1 NC_010116_p1 hypothetical protein phrog_6420 unknown function unknown function 1 68 412
YP_001595873.1 NC_010116_p50 hypothetical protein phrog_4044 terminase small subunit head and packaging 1 33499 34026
YP_001595898.1 NC_010116_p75 hypothetical protein phrog_1196 tail assembly chaperone tail 1 55817 56023
YP_001595884.1 NC_010116_p61 hypothetical protein phrog_8226 holin lysis 1 42537 42872
YP_001595872.1 NC_010116_p49 hypothetical protein phrog_6858 unknown function unknown function 1 32591 32839
YP_001595861.1 NC_010116_p38 hypothetical protein phrog_17285 unknown function unknown function 1 27237 27401
YP_001595866.1 NC_010116_p43 hypothetical protein phrog_3628 unknown function unknown function 1 29858 30610
YP_001595896.1 NC_010116_p73 structural phage protein phrog_778 tail assembly protein tail 1 54764 55573
YP_001595888.1 NC_010116_p65 structural phage protein phrog_179 tail terminator connector 1 44469 44921
YP_001595897.1 NC_010116_p74 structural phage protein phrog_1180 tail assembly chaperone tail 1 55587 55820
YP_001595874.1 NC_010116_p51 hypothetical protein phrog_2 terminase large subunit head and packaging 1 34026 35573
YP_001595828.1 NC_010116_p5 hypothetical protein phrog_2402 unknown function unknown function 1 3642 4481