| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_010116 |
Definition |
Pseudomonas phage YuA, complete genome. |
Molecule type |
DNA |
Genome structure |
circular |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Yuavirus. |
DB of origin |
REFSEQ |
Length |
58663 |
Host Name |
Pseudomonas aeruginosa |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
77 |
%GC |
64.26 |
Number of singletons |
1 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_001595841.1 | NC_010116_p18 | hypothetical protein | phrog_6047 | unknown function | unknown function | 1 | 15360 | 15956 |
| YP_001595839.1 | NC_010116_p16 | hypothetical protein | phrog_19970 | unknown function | unknown function | 1 | 14202 | 14315 |
| YP_001595871.1 | NC_010116_p48 | hypothetical protein | phrog_21134 | unknown function | unknown function | 1 | 32197 | 32601 |
| YP_001595878.1 | NC_010116_p55 | structural phage protein | phrog_206 | head scaffolding protein | head and packaging | 1 | 38543 | 39325 |
| YP_001595843.1 | NC_010116_p20 | hypothetical protein | phrog_5839 | unknown function | unknown function | 1 | 16148 | 16513 |
| YP_001595855.1 | NC_010116_p32 | hypothetical protein | phrog_9147 | unknown function | unknown function | 1 | 24957 | 25562 |
| YP_001595848.1 | NC_010116_p25 | hypothetical protein | phrog_3 | transcriptional repressor | transcription regulation | 1 | 19624 | 19950 |
| YP_001595846.1 | NC_010116_p23 | hypothetical protein | phrog_174 | dCMP deaminase | DNA, RNA and nucleotide metabolism | 1 | 18787 | 19248 |
| YP_001595875.1 | NC_010116_p52 | structural phage protein | phrog_145 | portal protein | head and packaging | 1 | 35631 | 37154 |
| YP_001595840.1 | NC_010116_p17 | hypothetical protein | phrog_5131 | thymidylate synthase | DNA, RNA and nucleotide metabolism | 1 | 14312 | 15367 |
| YP_001595870.1 | NC_010116_p47 | hypothetical protein | phrog_8760 | unknown function | unknown function | 1 | 31988 | 32200 |
| YP_001595830.1 | NC_010116_p7 | hypothetical protein | phrog_84 | ribonucleoside-diphosphate reductase large subunit | DNA, RNA and nucleotide metabolism | 1 | 5918 | 7660 |
| YP_001595881.1 | NC_010116_p58 | hypothetical protein | phrog_6213 | unknown function | unknown function | 1 | 41164 | 41769 |
| YP_001595880.1 | NC_010116_p57 | structural phage protein | phrog_15312 | virion structural protein | head and packaging | 1 | 40627 | 41136 |
| YP_001595864.1 | NC_010116_p41 | hypothetical protein | phrog_255 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 28277 | 28849 |
| YP_001595883.1 | NC_010116_p60 | holin | phrog_1327 | Rz-like spanin | lysis | 1 | 41971 | 42540 |
| YP_001595845.1 | NC_010116_p22 | hypothetical protein | singleton | unknown function | unknown function | 1 | 18593 | 18790 |
| YP_001595876.1 | NC_010116_p53 | hypothetical protein | phrog_9943 | unknown function | unknown function | 1 | 37151 | 37282 |
| YP_001595893.1 | NC_010116_p70 | structural phage protein | phrog_687 | structural protein | head and packaging | 1 | 50563 | 52086 |
| YP_001595895.1 | NC_010116_p72 | structural phage protein | phrog_1082 | tail assembly protein | tail | 1 | 53097 | 54767 |
| YP_001595853.1 | NC_010116_p30 | hypothetical protein | phrog_9297 | unknown function | unknown function | 1 | 24323 | 24661 |
| YP_001595844.1 | NC_010116_p21 | hypothetical protein | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 16513 | 18507 |
| YP_001595857.1 | NC_010116_p34 | hypothetical protein | phrog_13330 | unknown function | unknown function | 1 | 26032 | 26361 |
| YP_001595889.1 | NC_010116_p66 | major structural phage protein | phrog_290 | minor tail protein | tail | 1 | 44955 | 46487 |
| YP_001595877.1 | NC_010116_p54 | structural phage protein | phrog_241 | head morphogenesis | head and packaging | 1 | 37266 | 38474 |
| YP_001595826.1 | NC_010116_p3 | hypothetical protein | phrog_5888 | unknown function | unknown function | 1 | 2542 | 2895 |
| YP_001595868.1 | NC_010116_p45 | hypothetical protein | phrog_10132 | anti-restriction protein | moron, auxiliary metabolic gene and host takeover | 1 | 31147 | 31572 |
| YP_001595863.1 | NC_010116_p40 | hypothetical protein | phrog_5016 | unknown function | unknown function | 1 | 27994 | 28275 |
| YP_001595892.1 | NC_010116_p69 | structural phage protein | phrog_3336 | tail length tape measure protein | tail | 1 | 47731 | 50553 |
| YP_001595833.1 | NC_010116_p10 | hypothetical protein | phrog_6364 | unknown function | unknown function | 1 | 8773 | 9648 |
| YP_001595836.1 | NC_010116_p13 | hypothetical protein | phrog_800 | terminase small subunit | head and packaging | 1 | 12053 | 12616 |
| YP_001595886.1 | NC_010116_p63 | structural phage protein | phrog_477 | head-tail adaptor Ad1 | connector | 1 | 43582 | 44100 |
| YP_001595860.1 | NC_010116_p37 | hypothetical protein | phrog_9190 | unknown function | unknown function | 1 | 26971 | 27240 |
| YP_001595900.1 | NC_010116_p77 | structural phage protein | phrog_5363 | unknown function | unknown function | 1 | 58178 | 58663 |
| YP_001595894.1 | NC_010116_p71 | structural phage protein | phrog_687 | structural protein | head and packaging | 1 | 52100 | 53095 |
| YP_001595891.1 | NC_010116_p68 | hypothetical protein | phrog_169 | tail completion or Neck1 protein | connector | 1 | 47282 | 47728 |
| YP_001595859.1 | NC_010116_p36 | hypothetical protein | phrog_9341 | unknown function | unknown function | 1 | 26679 | 26966 |
| YP_001595885.1 | NC_010116_p62 | bacteriophage lysis protein | phrog_669 | endolysin | lysis | 1 | 42857 | 43582 |
| YP_001595825.1 | NC_010116_p2 | hypothetical protein | phrog_62 | DNA helicase | DNA, RNA and nucleotide metabolism | 1 | 840 | 2534 |
| YP_001595887.1 | NC_010116_p64 | structural phage protein | phrog_161 | head closure Hc1 | connector | 1 | 44104 | 44472 |
| YP_001595831.1 | NC_010116_p8 | hypothetical protein | phrog_7790 | unknown function | unknown function | 1 | 7806 | 8489 |
| YP_001595827.1 | NC_010116_p4 | hypothetical protein | phrog_2378 | unknown function | unknown function | 1 | 2955 | 3500 |
| YP_001595835.1 | NC_010116_p12 | hypothetical protein | phrog_9252 | DNA repair photolyase | DNA, RNA and nucleotide metabolism | 1 | 10556 | 11998 |
| YP_001595842.1 | NC_010116_p19 | hypothetical protein | phrog_14034 | unknown function | unknown function | 1 | 15931 | 16158 |
| YP_001595867.1 | NC_010116_p44 | hypothetical protein | phrog_5594 | unknown function | unknown function | 1 | 30614 | 31084 |
| YP_001595869.1 | NC_010116_p46 | hypothetical protein | phrog_10108 | unknown function | unknown function | 1 | 31630 | 31965 |
| YP_001595862.1 | NC_010116_p39 | hypothetical protein | phrog_4301 | unknown function | unknown function | 1 | 27380 | 27997 |
| YP_001595858.1 | NC_010116_p35 | hypothetical protein | phrog_8020 | unknown function | unknown function | 1 | 26377 | 26676 |
| YP_001595837.1 | NC_010116_p14 | hypothetical protein | phrog_2396 | unknown function | unknown function | 1 | 12616 | 13602 |
| YP_001595832.1 | NC_010116_p9 | hypothetical protein | phrog_4445 | unknown function | unknown function | 1 | 8500 | 8763 |
| YP_001595856.1 | NC_010116_p33 | hypothetical protein | phrog_7569 | unknown function | unknown function | 1 | 25559 | 26035 |
| YP_001595834.1 | NC_010116_p11 | hypothetical protein | phrog_7093 | threonine dehydratase | other | 1 | 9650 | 10486 |
| YP_001595865.1 | NC_010116_p42 | hypothetical protein | phrog_8776 | unknown function | unknown function | 1 | 29122 | 29742 |
| YP_001595854.1 | NC_010116_p31 | hypothetical protein | phrog_8938 | unknown function | unknown function | 1 | 24685 | 24954 |
| YP_001595882.1 | NC_010116_p59 | structural phage protein | phrog_8884 | unknown function | unknown function | 1 | 41797 | 41967 |
| YP_001595852.1 | NC_010116_p29 | hypothetical protein | phrog_8203 | unknown function | unknown function | 1 | 23148 | 24326 |
| YP_001595849.1 | NC_010116_p26 | hypothetical protein | phrog_1829 | DNA primase | DNA, RNA and nucleotide metabolism | 1 | 19963 | 22374 |
| YP_001595890.1 | NC_010116_p67 | hypothetical protein | phrog_313 | Tail assembly chaperone | tail | 1 | 46550 | 47008 |
| YP_001595879.1 | NC_010116_p56 | major structural phage protein | phrog_212 | major head protein | head and packaging | 1 | 39520 | 40452 |
| YP_001595851.1 | NC_010116_p28 | hypothetical protein | phrog_14626 | unknown function | unknown function | 1 | 22746 | 23111 |
| YP_001595850.1 | NC_010116_p27 | hypothetical protein | phrog_2053 | unknown function | unknown function | 1 | 22419 | 22634 |
| YP_001595847.1 | NC_010116_p24 | hypothetical protein | phrog_2165 | DNA helicase | DNA, RNA and nucleotide metabolism | 1 | 19256 | 19639 |
| YP_001595838.1 | NC_010116_p15 | hypothetical protein | phrog_1965 | unknown function | unknown function | 1 | 13629 | 14189 |
| YP_001595829.1 | NC_010116_p6 | hypothetical protein | phrog_325 | Dda-like helicase | DNA, RNA and nucleotide metabolism | 1 | 4583 | 5776 |
| YP_001595899.1 | NC_010116_p76 | structural phage protein | phrog_1101 | tail protein | tail | 1 | 56106 | 58178 |
| YP_001595824.1 | NC_010116_p1 | hypothetical protein | phrog_6420 | unknown function | unknown function | 1 | 68 | 412 |
| YP_001595873.1 | NC_010116_p50 | hypothetical protein | phrog_4044 | terminase small subunit | head and packaging | 1 | 33499 | 34026 |
| YP_001595898.1 | NC_010116_p75 | hypothetical protein | phrog_1196 | tail assembly chaperone | tail | 1 | 55817 | 56023 |
| YP_001595884.1 | NC_010116_p61 | hypothetical protein | phrog_8226 | holin | lysis | 1 | 42537 | 42872 |
| YP_001595872.1 | NC_010116_p49 | hypothetical protein | phrog_6858 | unknown function | unknown function | 1 | 32591 | 32839 |
| YP_001595861.1 | NC_010116_p38 | hypothetical protein | phrog_17285 | unknown function | unknown function | 1 | 27237 | 27401 |
| YP_001595866.1 | NC_010116_p43 | hypothetical protein | phrog_3628 | unknown function | unknown function | 1 | 29858 | 30610 |
| YP_001595896.1 | NC_010116_p73 | structural phage protein | phrog_778 | tail assembly protein | tail | 1 | 54764 | 55573 |
| YP_001595888.1 | NC_010116_p65 | structural phage protein | phrog_179 | tail terminator | connector | 1 | 44469 | 44921 |
| YP_001595897.1 | NC_010116_p74 | structural phage protein | phrog_1180 | tail assembly chaperone | tail | 1 | 55587 | 55820 |
| YP_001595874.1 | NC_010116_p51 | hypothetical protein | phrog_2 | terminase large subunit | head and packaging | 1 | 34026 | 35573 |
| YP_001595828.1 | NC_010116_p5 | hypothetical protein | phrog_2402 | unknown function | unknown function | 1 | 3642 | 4481 |