| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_010326 |
Definition |
Pseudomonas phage LUZ19, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Autographiviridae; Krylovirinae; Phikmvvirus; Pseudomonas virus LUZ19. |
DB of origin |
REFSEQ |
Length |
43548 |
Host Name |
Pseudomonas aeruginosa |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
54 |
%GC |
62.27 |
Number of singletons |
1 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_001671944.1 | NC_010326_p3 | hypothetical protein | phrog_7124 | unknown function | unknown function | 1 | 2041 | 2268 |
| YP_001671948.1 | NC_010326_p7 | hypothetical protein | phrog_36558 | unknown function | unknown function | 1 | 3944 | 4204 |
| YP_001671960.1 | NC_010326_p19 | hypothetical protein | phrog_1614 | nucleotidyltransferase | DNA, RNA and nucleotide metabolism | 1 | 9800 | 10420 |
| YP_001671988.1 | NC_010326_p47 | terminase large subunit | phrog_38 | terminase large subunit | head and packaging | 1 | 39253 | 41058 |
| YP_001671986.1 | NC_010326_p45 | tail fibre protein | phrog_4950 | tail fiber protein | tail | 1 | 38333 | 38938 |
| YP_001671976.1 | NC_010326_p35 | scaffolding protein | phrog_1018 | head scaffolding protein | head and packaging | 1 | 23796 | 24764 |
| YP_001671973.1 | NC_010326_p32 | hypothetical protein | phrog_3986 | unknown function | unknown function | 1 | 21534 | 22007 |
| YP_001671946.1 | NC_010326_p5 | hypothetical protein | phrog_6951 | unknown function | unknown function | 1 | 3186 | 3554 |
| YP_001671947.1 | NC_010326_p6 | hypothetical protein | phrog_7027 | unknown function | unknown function | 1 | 3541 | 3765 |
| YP_001671970.1 | NC_010326_p29 | hypothetical protein | phrog_18213 | unknown function | unknown function | 1 | 18304 | 18654 |
| YP_001671983.1 | NC_010326_p42 | phage particle protein | phrog_6953 | tail fiber protein | tail | 1 | 36218 | 36973 |
| YP_001671968.1 | NC_010326_p27 | hypothetical protein | phrog_403 | DNA polymerase exonuclease subunit | DNA, RNA and nucleotide metabolism | 1 | 16884 | 17930 |
| YP_001671967.1 | NC_010326_p26 | endonuclease type 7 | phrog_423 | endonuclease VII | DNA, RNA and nucleotide metabolism | 1 | 16447 | 16887 |
| YP_001671952.1 | NC_010326_p11 | hypothetical protein | phrog_5433 | unknown function | unknown function | 1 | 5095 | 5511 |
| YP_001671971.1 | NC_010326_p30 | phage-specific RNA polymerase | phrog_414 | RNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 18663 | 21110 |
| YP_001671984.1 | NC_010326_p43 | tail fibre protein | phrog_8874 | tail fiber protein | tail | 1 | 36973 | 37431 |
| YP_001671957.1 | NC_010326_p16 | hypothetical protein | phrog_9768 | unknown function | unknown function | 1 | 7553 | 7681 |
| YP_001671975.1 | NC_010326_p34 | head-tail connector protein | phrog_449 | head-tail adaptor | connector | 1 | 22260 | 23792 |
| YP_001671953.1 | NC_010326_p12 | hypothetical protein | phrog_6915 | unknown function | unknown function | 1 | 5580 | 5939 |
| YP_001671945.1 | NC_010326_p4 | hypothetical protein | phrog_1448 | unknown function | unknown function | 1 | 2279 | 2818 |
| YP_001671964.1 | NC_010326_p23 | hypothetical protein | phrog_5437 | unknown function | unknown function | 1 | 14101 | 14412 |
| YP_001671965.1 | NC_010326_p24 | hypothetical protein | phrog_862 | unknown function | unknown function | 1 | 14467 | 15516 |
| YP_001671963.1 | NC_010326_p22 | DNA polymerase | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 11681 | 14104 |
| YP_001671949.1 | NC_010326_p8 | hypothetical protein | phrog_4342 | unknown function | unknown function | 1 | 4204 | 4494 |
| YP_001671989.1 | NC_010326_p48 | holin | phrog_6597 | holin | lysis | 1 | 41055 | 41255 |
| YP_001671950.1 | NC_010326_p9 | hypothetical protein | phrog_24541 | unknown function | unknown function | 1 | 4494 | 4724 |
| YP_001671943.1 | NC_010326_p2 | hypothetical protein | phrog_5722 | unknown function | unknown function | 1 | 1757 | 2041 |
| YP_001671974.1 | NC_010326_p33 | hypothetical protein | phrog_3112 | virion structural protein | head and packaging | 1 | 21973 | 22248 |
| YP_001671979.1 | NC_010326_p38 | tail tubular protein B | phrog_457 | tail protein | tail | 1 | 26478 | 28958 |
| YP_001671958.1 | NC_010326_p17 | primase | phrog_47 | DNA primase | DNA, RNA and nucleotide metabolism | 1 | 7749 | 8573 |
| YP_001671969.1 | NC_010326_p28 | hypothetical protein | phrog_801 | dATP / dGTP pyrophosphohydrolase | DNA, RNA and nucleotide metabolism | 1 | 17940 | 18311 |
| YP_001671980.1 | NC_010326_p39 | internal virion protein | phrog_805 | internal virion protein | head and packaging | 1 | 28958 | 29503 |
| YP_001671942.1 | NC_010326_p1 | hypothetical protein | phrog_20091 | unknown function | unknown function | 1 | 1616 | 1744 |
| YP_001671992.1 | NC_010326_p51 | Rz1 protein | phrog_456 | Rz-like spanin | lysis | 1 | 41909 | 42109 |
| YP_001671966.1 | NC_010326_p25 | 5'-3' exonuclease | phrog_107 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 15516 | 16457 |
| YP_001671961.1 | NC_010326_p20 | DNA Ligase | phrog_114 | ATP-dependent DNA ligase | DNA, RNA and nucleotide metabolism | 1 | 10420 | 11367 |
| YP_001671985.1 | NC_010326_p44 | tail fibre protein | phrog_4176 | tail fiber protein | tail | 1 | 37424 | 38329 |
| YP_001671990.1 | NC_010326_p49 | endolysin | phrog_7 | endolysin | lysis | 1 | 41252 | 41734 |
| YP_001671993.1 | NC_010326_p52 | phage particle protein | phrog_6908 | minor head protein | head and packaging | 1 | 42111 | 42425 |
| YP_001671951.1 | NC_010326_p10 | hypothetical protein | phrog_4342 | unknown function | unknown function | 1 | 4729 | 5016 |
| YP_001671994.1 | NC_010326_p53 | phage particle protein | phrog_7171 | minor head protein | head and packaging | 1 | 42473 | 42718 |
| YP_001671995.1 | NC_010326_p54 | hypothetical protein | singleton | unknown function | unknown function | 1 | 42728 | 42943 |
| YP_001671956.1 | NC_010326_p15 | hypothetical protein | phrog_2563 | unknown function | unknown function | 1 | 7276 | 7563 |
| YP_001671955.1 | NC_010326_p14 | hypothetical protein | phrog_9409 | unknown function | unknown function | 1 | 6831 | 7250 |
| YP_001671987.1 | NC_010326_p46 | terminase small subunit | phrog_891 | terminase small subunit | head and packaging | 1 | 38938 | 39243 |
| YP_001671978.1 | NC_010326_p37 | tail tubular protein A | phrog_446 | tail protein | tail | 1 | 25921 | 26475 |
| YP_001671962.1 | NC_010326_p21 | hypothetical protein | phrog_7292 | unknown function | unknown function | 1 | 11364 | 11684 |
| YP_001671959.1 | NC_010326_p18 | DNA_B Helicase | phrog_19 | DnaB-like replicative helicase | DNA, RNA and nucleotide metabolism | 1 | 8617 | 9810 |
| YP_001671981.1 | NC_010326_p40 | internal virion protein | phrog_2083 | internal virion lysozyme motif | head and packaging | 1 | 29503 | 32199 |
| YP_001671972.1 | NC_010326_p31 | hypothetical protein | phrog_6575 | unknown function | unknown function | 1 | 21283 | 21534 |
| YP_001671954.1 | NC_010326_p13 | hypothetical protein | phrog_6982 | DNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 5942 | 6751 |
| YP_001671991.1 | NC_010326_p50 | Rz protein | phrog_214 | Rz-like spanin | lysis | 1 | 41692 | 42021 |
| YP_001671977.1 | NC_010326_p36 | major capsid protein | phrog_267 | major head protein | head and packaging | 1 | 24817 | 25824 |
| YP_001671982.1 | NC_010326_p41 | internal virion protein | phrog_342 | internal virion protein with endolysin domain | head and packaging | 1 | 32203 | 36216 |