| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_010363 |
Definition |
Lactococcus phage asccphi28, complete genome. |
Molecule type |
DNA |
Genome structure |
circular |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Podoviridae; unclassified Podoviridae. |
DB of origin |
REFSEQ |
Length |
18762 |
Host Name |
Lactococcus lactis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
28 |
%GC |
33.65 |
Number of singletons |
0 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_001687527.1 | NC_010363_p14 | tail protein | phrog_32033 | tail protein | tail | -1 | 8089 | 9777 |
| YP_001687536.1 | NC_010363_p23 | major capsid protein | phrog_33048 | major head protein | head and packaging | -1 | 15110 | 16570 |
| YP_001687521.1 | NC_010363_p8 | hypothetical protein | phrog_34581 | unknown function | unknown function | 1 | 4429 | 4869 |
| YP_001687540.1 | NC_010363_p27 | ssDNA-binding | phrog_6243 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 17191 | 17682 |
| YP_001687537.1 | NC_010363_p24 | hypothetical protein | phrog_28457 | unknown function | unknown function | -1 | 15244 | 15594 |
| YP_001687516.1 | NC_010363_p3 | hypothetical protein | phrog_30289 | unknown function | unknown function | 1 | 1069 | 1281 |
| YP_001687514.1 | NC_010363_p1 | hypothetical protein | phrog_36694 | unknown function | unknown function | 1 | 614 | 871 |
| YP_001687531.1 | NC_010363_p18 | hypothetical protein | phrog_17155 | unknown function | unknown function | -1 | 12128 | 13081 |
| YP_001687515.1 | NC_010363_p2 | hypothetical protein | phrog_29670 | unknown function | unknown function | 1 | 861 | 1061 |
| YP_001687524.1 | NC_010363_p11 | encapsidation protein | phrog_31603 | terminase | head and packaging | 1 | 5451 | 6551 |
| YP_001687541.1 | NC_010363_p28 | hypothetical protein | phrog_35920 | unknown function | unknown function | -1 | 17896 | 18168 |
| YP_001687519.1 | NC_010363_p6 | terminal protein | phrog_35532 | unknown function | unknown function | 1 | 1736 | 2239 |
| YP_001687518.1 | NC_010363_p5 | hypothetical protein | phrog_27956 | unknown function | unknown function | 1 | 1596 | 1742 |
| YP_001687533.1 | NC_010363_p20 | hypothetical protein | phrog_35026 | unknown function | unknown function | -1 | 13176 | 13322 |
| YP_001687534.1 | NC_010363_p21 | upper collar | phrog_2038 | upper collar connector | connector | -1 | 14086 | 14856 |
| YP_001687523.1 | NC_010363_p10 | holin | phrog_38456 | holin | lysis | 1 | 5081 | 5467 |
| YP_001687517.1 | NC_010363_p4 | hypothetical protein | phrog_34616 | unknown function | unknown function | 1 | 1283 | 1564 |
| YP_001687529.1 | NC_010363_p16 | hypothetical protein | phrog_35466 | unknown function | unknown function | -1 | 10524 | 11282 |
| YP_001687525.1 | NC_010363_p12 | lysin | phrog_37633 | endolysin | lysis | 1 | 6563 | 7690 |
| YP_001687528.1 | NC_010363_p15 | lower collar protein | phrog_27979 | unknown function | unknown function | -1 | 9820 | 10527 |
| YP_001687539.1 | NC_010363_p26 | hypothetical protein | phrog_36210 | unknown function | unknown function | -1 | 16918 | 17082 |
| YP_001687535.1 | NC_010363_p22 | hypothetical protein | phrog_35903 | unknown function | unknown function | -1 | 14856 | 15056 |
| YP_001687520.1 | NC_010363_p7 | DNA polymerase | phrog_1907 | DNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 2264 | 4432 |
| YP_001687522.1 | NC_010363_p9 | hypothetical protein | phrog_35781 | unknown function | unknown function | 1 | 4871 | 5041 |
| YP_001687526.1 | NC_010363_p13 | tail protein | phrog_35749 | tail protein | tail | -1 | 7730 | 8203 |
| YP_001687530.1 | NC_010363_p17 | hypothetical protein | phrog_15030 | unknown function | unknown function | -1 | 11297 | 12118 |
| YP_001687532.1 | NC_010363_p19 | hypothetical protein | phrog_3393 | endolysin | lysis | -1 | 13093 | 14085 |
| YP_001687538.1 | NC_010363_p25 | hypothetical protein | phrog_37468 | unknown function | unknown function | -1 | 16573 | 16914 |