| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_010495 |
Definition |
Salmonella phage E1, complete genome. |
Molecule type |
DNA |
Genome structure |
circular |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae. |
DB of origin |
REFSEQ |
Length |
45051 |
Host Name |
Salmonella enterica |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
51 |
%GC |
46.12 |
Number of singletons |
3 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_001742056.1 | NC_010495_p19 | hypothetical protein | singleton | unknown function | unknown function | 1 | 13078 | 13278 |
| YP_001742043.1 | NC_010495_p6 | lysozyme | phrog_10457 | endolysin | lysis | 1 | 5490 | 5768 |
| YP_001742082.1 | NC_010495_p45 | ATP-dependent helicase | phrog_16 | DNA helicase | DNA, RNA and nucleotide metabolism | -1 | 35241 | 37175 |
| YP_001742073.1 | NC_010495_p36 | hypothetical protein | phrog_396 | minor tail protein | tail | 1 | 24835 | 25305 |
| YP_001742066.1 | NC_010495_p29 | major tail subunit | phrog_853 | major tail protein | tail | 1 | 18466 | 19185 |
| YP_001742070.1 | NC_010495_p33 | tail protein (tape measure) | phrog_1538 | tail length tape measure protein | tail | 1 | 20572 | 23514 |
| YP_001742040.1 | NC_010495_p3 | hypothetical protein | phrog_13301 | unknown function | unknown function | 1 | 2203 | 2544 |
| YP_001742084.1 | NC_010495_p47 | DNA primase | phrog_510 | DNA primase | DNA, RNA and nucleotide metabolism | 1 | 38333 | 39286 |
| YP_001742085.1 | NC_010495_p48 | hypothetical protein | phrog_2373 | DNA helicase | DNA, RNA and nucleotide metabolism | -1 | 39956 | 41509 |
| YP_001742067.1 | NC_010495_p30 | hypothetical membrane protein | singleton | unknown function | unknown function | 1 | 19223 | 19402 |
| YP_001742075.1 | NC_010495_p38 | hypothetical protein | phrog_469 | tail protein | tail | 1 | 25812 | 28160 |
| YP_001742060.1 | NC_010495_p23 | hypothetical membrane protein | phrog_13738 | membrane protein | moron, auxiliary metabolic gene and host takeover | 1 | 15103 | 15387 |
| YP_001742072.1 | NC_010495_p35 | hypothetical protein | phrog_384 | virion structural protein | head and packaging | 1 | 24365 | 24835 |
| YP_001742076.1 | NC_010495_p39 | hypothetical protein | phrog_559 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 28355 | 29818 |
| YP_001742048.1 | NC_010495_p11 | hypothetical protein | singleton | unknown function | unknown function | -1 | 6943 | 7206 |
| YP_001742038.1 | NC_010495_p1 | hypothetical protein | phrog_9747 | unknown function | unknown function | 1 | 1 | 447 |
| YP_001742069.1 | NC_010495_p32 | hypothetical protein | phrog_791 | unknown function | unknown function | 1 | 19856 | 20572 |
| YP_001742047.1 | NC_010495_p10 | tail protein | phrog_11621 | Rz-like spanin | lysis | 1 | 6617 | 6883 |
| YP_001742074.1 | NC_010495_p37 | possible tail assembly protein | phrog_329 | minor tail protein | tail | 1 | 25268 | 25765 |
| YP_001742055.1 | NC_010495_p18 | hypothetical protein | phrog_2138 | unknown function | unknown function | 1 | 12809 | 13030 |
| YP_001742081.1 | NC_010495_p44 | hypothetical protein | phrog_824 | unknown function | unknown function | -1 | 34829 | 35254 |
| YP_001742058.1 | NC_010495_p21 | phage-related DNA-binding protein | phrog_1033 | ParB-like partition protein | DNA, RNA and nucleotide metabolism | -1 | 13474 | 14286 |
| YP_001742049.1 | NC_010495_p12 | hypothetical protein | phrog_599 | Lar-like restriction alleviation protein | moron, auxiliary metabolic gene and host takeover | 1 | 8203 | 8427 |
| YP_001742059.1 | NC_010495_p22 | hypothetical phage lipoprotein | phrog_14688 | lipoprotein | other | 1 | 14630 | 15070 |
| YP_001742063.1 | NC_010495_p26 | hypothetical protein | phrog_5 | tail completion or Neck1 protein | connector | 1 | 16098 | 16496 |
| YP_001742080.1 | NC_010495_p43 | exodeoxyribonuclease | phrog_412 | exonuclease VIII | DNA, RNA and nucleotide metabolism | -1 | 33853 | 34803 |
| YP_001742062.1 | NC_010495_p25 | hypothetical protein | phrog_797 | unknown function | unknown function | 1 | 15757 | 16098 |
| YP_001742041.1 | NC_010495_p4 | portal protein | phrog_146 | portal protein | head and packaging | 1 | 2936 | 4348 |
| YP_001742052.1 | NC_010495_p15 | hypothetical protein | phrog_760 | unknown function | unknown function | 1 | 9730 | 11220 |
| YP_001742057.1 | NC_010495_p20 | hypothetical protein | phrog_7185 | unknown function | unknown function | -1 | 13223 | 13474 |
| YP_001742051.1 | NC_010495_p14 | hypothetical protein | phrog_14549 | unknown function | unknown function | 1 | 9144 | 9470 |
| YP_001742045.1 | NC_010495_p8 | hypothetical protein | phrog_13249 | holin | lysis | 1 | 6219 | 6458 |
| YP_001742044.1 | NC_010495_p7 | lysozyme | phrog_90 | endolysin | lysis | 1 | 5758 | 6222 |
| YP_001742086.1 | NC_010495_p49 | hypothetical protein | phrog_368 | unknown function | unknown function | 1 | 42940 | 43359 |
| YP_001742083.1 | NC_010495_p46 | endonuclease protein | phrog_99 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 37184 | 38188 |
| YP_001742061.1 | NC_010495_p24 | hypothetical protein | phrog_786 | unknown function | unknown function | 1 | 15419 | 15760 |
| YP_001742064.1 | NC_010495_p27 | hypothetical protein | phrog_782 | unknown function | unknown function | 1 | 16496 | 16870 |
| YP_001742039.1 | NC_010495_p2 | large terminase subunit | phrog_2 | terminase large subunit | head and packaging | 1 | 577 | 2001 |
| YP_001742054.1 | NC_010495_p17 | coat protein | phrog_771 | virion structural protein | head and packaging | 1 | 11693 | 12766 |
| YP_001742079.1 | NC_010495_p42 | recombination protein | phrog_155 | Erf-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | -1 | 33174 | 33836 |
| YP_001742071.1 | NC_010495_p34 | hypothetical protein | phrog_6095 | amidase | lysis | -1 | 23540 | 24190 |
| YP_001742053.1 | NC_010495_p16 | capsid decoration protein | phrog_766 | head decoration | head and packaging | 1 | 11220 | 11693 |
| YP_001742077.1 | NC_010495_p40 | maturation/adhesion protein | phrog_17635 | tail fiber protein | tail | 1 | 29858 | 32248 |
| YP_001742050.1 | NC_010495_p13 | hypothetical protein | phrog_1687 | MarR family transcrition regulator | transcription regulation | 1 | 8438 | 8911 |
| YP_001742078.1 | NC_010495_p41 | bacterial type single-stranded DNA-binding protein | phrog_44 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 32685 | 33170 |
| YP_001742046.1 | NC_010495_p9 | tail protein | phrog_312 | Rz-like spanin | lysis | 1 | 6439 | 6930 |
| YP_001742065.1 | NC_010495_p28 | DNA-binding protein | phrog_63 | anti-repressor Ant | transcription regulation | -1 | 17110 | 17811 |
| YP_001742042.1 | NC_010495_p5 | head assembly protein | phrog_758 | head morphogenesis | head and packaging | 1 | 4329 | 5279 |
| YP_001742087.1 | NC_010495_p50 | hypothetical protein | phrog_3126 | unknown function | unknown function | 1 | 43356 | 43700 |
| YP_001742088.1 | NC_010495_p51 | endonuclease protein | phrog_99 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 44398 | 44835 |
| YP_001742068.1 | NC_010495_p31 | exported phage protein | phrog_2315 | unknown function | unknown function | -1 | 19409 | 19747 |