Genomic map of Salmonella phage Vi II-E1 (NC_010495)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_010495
Definition
Salmonella phage E1, complete genome.
Molecule type
DNA
Genome structure
circular
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae.
DB of origin
REFSEQ
Length
45051
Host Name
Salmonella enterica
Host domain
Bacteria
Is prophage?
undef
Number of proteins
51
%GC
46.12
Number of singletons
3
Number of paralogs
1

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_001742056.1 NC_010495_p19 hypothetical protein singleton unknown function unknown function 1 13078 13278
YP_001742043.1 NC_010495_p6 lysozyme phrog_10457 endolysin lysis 1 5490 5768
YP_001742082.1 NC_010495_p45 ATP-dependent helicase phrog_16 DNA helicase DNA, RNA and nucleotide metabolism -1 35241 37175
YP_001742073.1 NC_010495_p36 hypothetical protein phrog_396 minor tail protein tail 1 24835 25305
YP_001742066.1 NC_010495_p29 major tail subunit phrog_853 major tail protein tail 1 18466 19185
YP_001742070.1 NC_010495_p33 tail protein (tape measure) phrog_1538 tail length tape measure protein tail 1 20572 23514
YP_001742040.1 NC_010495_p3 hypothetical protein phrog_13301 unknown function unknown function 1 2203 2544
YP_001742084.1 NC_010495_p47 DNA primase phrog_510 DNA primase DNA, RNA and nucleotide metabolism 1 38333 39286
YP_001742085.1 NC_010495_p48 hypothetical protein phrog_2373 DNA helicase DNA, RNA and nucleotide metabolism -1 39956 41509
YP_001742067.1 NC_010495_p30 hypothetical membrane protein singleton unknown function unknown function 1 19223 19402
YP_001742075.1 NC_010495_p38 hypothetical protein phrog_469 tail protein tail 1 25812 28160
YP_001742060.1 NC_010495_p23 hypothetical membrane protein phrog_13738 membrane protein moron, auxiliary metabolic gene and host takeover 1 15103 15387
YP_001742072.1 NC_010495_p35 hypothetical protein phrog_384 virion structural protein head and packaging 1 24365 24835
YP_001742076.1 NC_010495_p39 hypothetical protein phrog_559 HNH endonuclease DNA, RNA and nucleotide metabolism -1 28355 29818
YP_001742048.1 NC_010495_p11 hypothetical protein singleton unknown function unknown function -1 6943 7206
YP_001742038.1 NC_010495_p1 hypothetical protein phrog_9747 unknown function unknown function 1 1 447
YP_001742069.1 NC_010495_p32 hypothetical protein phrog_791 unknown function unknown function 1 19856 20572
YP_001742047.1 NC_010495_p10 tail protein phrog_11621 Rz-like spanin lysis 1 6617 6883
YP_001742074.1 NC_010495_p37 possible tail assembly protein phrog_329 minor tail protein tail 1 25268 25765
YP_001742055.1 NC_010495_p18 hypothetical protein phrog_2138 unknown function unknown function 1 12809 13030
YP_001742081.1 NC_010495_p44 hypothetical protein phrog_824 unknown function unknown function -1 34829 35254
YP_001742058.1 NC_010495_p21 phage-related DNA-binding protein phrog_1033 ParB-like partition protein DNA, RNA and nucleotide metabolism -1 13474 14286
YP_001742049.1 NC_010495_p12 hypothetical protein phrog_599 Lar-like restriction alleviation protein moron, auxiliary metabolic gene and host takeover 1 8203 8427
YP_001742059.1 NC_010495_p22 hypothetical phage lipoprotein phrog_14688 lipoprotein other 1 14630 15070
YP_001742063.1 NC_010495_p26 hypothetical protein phrog_5 tail completion or Neck1 protein connector 1 16098 16496
YP_001742080.1 NC_010495_p43 exodeoxyribonuclease phrog_412 exonuclease VIII DNA, RNA and nucleotide metabolism -1 33853 34803
YP_001742062.1 NC_010495_p25 hypothetical protein phrog_797 unknown function unknown function 1 15757 16098
YP_001742041.1 NC_010495_p4 portal protein phrog_146 portal protein head and packaging 1 2936 4348
YP_001742052.1 NC_010495_p15 hypothetical protein phrog_760 unknown function unknown function 1 9730 11220
YP_001742057.1 NC_010495_p20 hypothetical protein phrog_7185 unknown function unknown function -1 13223 13474
YP_001742051.1 NC_010495_p14 hypothetical protein phrog_14549 unknown function unknown function 1 9144 9470
YP_001742045.1 NC_010495_p8 hypothetical protein phrog_13249 holin lysis 1 6219 6458
YP_001742044.1 NC_010495_p7 lysozyme phrog_90 endolysin lysis 1 5758 6222
YP_001742086.1 NC_010495_p49 hypothetical protein phrog_368 unknown function unknown function 1 42940 43359
YP_001742083.1 NC_010495_p46 endonuclease protein phrog_99 HNH endonuclease DNA, RNA and nucleotide metabolism -1 37184 38188
YP_001742061.1 NC_010495_p24 hypothetical protein phrog_786 unknown function unknown function 1 15419 15760
YP_001742064.1 NC_010495_p27 hypothetical protein phrog_782 unknown function unknown function 1 16496 16870
YP_001742039.1 NC_010495_p2 large terminase subunit phrog_2 terminase large subunit head and packaging 1 577 2001
YP_001742054.1 NC_010495_p17 coat protein phrog_771 virion structural protein head and packaging 1 11693 12766
YP_001742079.1 NC_010495_p42 recombination protein phrog_155 Erf-like ssDNA annealing protein DNA, RNA and nucleotide metabolism -1 33174 33836
YP_001742071.1 NC_010495_p34 hypothetical protein phrog_6095 amidase lysis -1 23540 24190
YP_001742053.1 NC_010495_p16 capsid decoration protein phrog_766 head decoration head and packaging 1 11220 11693
YP_001742077.1 NC_010495_p40 maturation/adhesion protein phrog_17635 tail fiber protein tail 1 29858 32248
YP_001742050.1 NC_010495_p13 hypothetical protein phrog_1687 MarR family transcrition regulator transcription regulation 1 8438 8911
YP_001742078.1 NC_010495_p41 bacterial type single-stranded DNA-binding protein phrog_44 single strand DNA binding protein DNA, RNA and nucleotide metabolism -1 32685 33170
YP_001742046.1 NC_010495_p9 tail protein phrog_312 Rz-like spanin lysis 1 6439 6930
YP_001742065.1 NC_010495_p28 DNA-binding protein phrog_63 anti-repressor Ant transcription regulation -1 17110 17811
YP_001742042.1 NC_010495_p5 head assembly protein phrog_758 head morphogenesis head and packaging 1 4329 5279
YP_001742087.1 NC_010495_p50 hypothetical protein phrog_3126 unknown function unknown function 1 43356 43700
YP_001742088.1 NC_010495_p51 endonuclease protein phrog_99 HNH endonuclease DNA, RNA and nucleotide metabolism 1 44398 44835
YP_001742068.1 NC_010495_p31 exported phage protein phrog_2315 unknown function unknown function -1 19409 19747