| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_010576 |
Definition |
Lactococcus phage 1706, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae. |
DB of origin |
REFSEQ |
Length |
55597 |
Host Name |
Lactococcus lactis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
76 |
%GC |
33.68 |
Number of singletons |
33 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_001828659.1 | NC_010576_p11 | structural protein | phrog_4270 | unknown function | unknown function | 1 | 9054 | 9383 |
| YP_001828703.1 | NC_010576_p55 | helicase | phrog_4210 | DNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 38582 | 42535 |
| YP_001828649.1 | NC_010576_p1 | hypothetical protein | phrog_17502 | unknown function | unknown function | 1 | 219 | 668 |
| YP_001828681.1 | NC_010576_p33 | hypothetical protein | singleton | unknown function | unknown function | 1 | 28199 | 28480 |
| YP_001828687.1 | NC_010576_p39 | hypothetical protein | singleton | unknown function | unknown function | 1 | 30005 | 30259 |
| YP_001828676.1 | NC_010576_p28 | hypothetical protein | singleton | unknown function | unknown function | 1 | 26002 | 26244 |
| YP_001828718.1 | NC_010576_p70 | hypothetical protein | phrog_1454 | unknown function | unknown function | 1 | 49336 | 49656 |
| YP_001828719.1 | NC_010576_p71 | structural protein | phrog_2428 | unknown function | unknown function | 1 | 49658 | 50011 |
| YP_001828656.1 | NC_010576_p8 | terminase large subunit | phrog_9 | terminase large subunit | head and packaging | 1 | 3902 | 5626 |
| YP_001828689.1 | NC_010576_p41 | hypothetical protein | singleton | unknown function | unknown function | 1 | 30512 | 30811 |
| YP_001828666.1 | NC_010576_p18 | tail protein | phrog_4372 | tail length tape measure protein | tail | 1 | 12832 | 18819 |
| YP_001828698.1 | NC_010576_p50 | repressor | phrog_5105 | unknown function | unknown function | 1 | 35144 | 35707 |
| YP_001828694.1 | NC_010576_p46 | hypothetical protein | singleton | unknown function | unknown function | 1 | 32448 | 33092 |
| YP_001828692.1 | NC_010576_p44 | hypothetical protein | singleton | unknown function | unknown function | 1 | 31880 | 32227 |
| YP_001828672.1 | NC_010576_p24 | hypothetical protein | singleton | unknown function | unknown function | 1 | 24425 | 24694 |
| YP_001828673.1 | NC_010576_p25 | hypothetical protein | singleton | unknown function | unknown function | 1 | 24910 | 25137 |
| YP_001828711.1 | NC_010576_p63 | hypothetical protein | phrog_236 | nucleotide kinase | other | 1 | 45387 | 45743 |
| YP_001828662.1 | NC_010576_p14 | hypothetical protein | phrog_4417 | unknown function | unknown function | 1 | 10504 | 11355 |
| YP_001828717.1 | NC_010576_p69 | hypothetical protein | phrog_3953 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 48761 | 49336 |
| YP_001828722.1 | NC_010576_p74 | hypothetical protein | singleton | unknown function | unknown function | 1 | 51421 | 51633 |
| YP_001828695.1 | NC_010576_p47 | positive regulator of sigma | singleton | unknown function | unknown function | 1 | 33498 | 34154 |
| YP_001828671.1 | NC_010576_p23 | hypothetical protein | phrog_17080 | unknown function | unknown function | 1 | 24070 | 24360 |
| YP_001828700.1 | NC_010576_p52 | hypothetical protein | singleton | unknown function | unknown function | 1 | 36723 | 37115 |
| YP_001828710.1 | NC_010576_p62 | structural protein | singleton | unknown function | unknown function | 1 | 45052 | 45330 |
| YP_001828724.1 | NC_010576_p76 | hypothetical protein | phrog_4303 | unknown function | unknown function | 1 | 55175 | 55435 |
| YP_001828709.1 | NC_010576_p61 | hypothetical protein | singleton | unknown function | unknown function | 1 | 44786 | 45052 |
| YP_001828720.1 | NC_010576_p72 | hypothetical protein | phrog_4997 | unknown function | unknown function | 1 | 50268 | 50615 |
| YP_001828716.1 | NC_010576_p68 | hypothetical protein | phrog_93 | endonuclease | DNA, RNA and nucleotide metabolism | 1 | 48435 | 48734 |
| YP_001828658.1 | NC_010576_p10 | capsid protein/putative protease | phrog_3270 | head maturation protease | head and packaging | 1 | 6971 | 9031 |
| YP_001828678.1 | NC_010576_p30 | hypothetical protein | phrog_9516 | replication initiation protein | DNA, RNA and nucleotide metabolism | 1 | 26665 | 27153 |
| YP_001828708.1 | NC_010576_p60 | hypothetical protein | singleton | unknown function | unknown function | 1 | 44210 | 44755 |
| YP_001828679.1 | NC_010576_p31 | hypothetical protein | singleton | unknown function | unknown function | 1 | 27119 | 27646 |
| YP_001828652.1 | NC_010576_p4 | hypothetical protein | phrog_4259 | unknown function | unknown function | 1 | 1379 | 1729 |
| YP_001828721.1 | NC_010576_p73 | amidase | phrog_1110 | endolysin | lysis | 1 | 50643 | 51413 |
| YP_001828723.1 | NC_010576_p75 | structural protein | phrog_4291 | RNA-dependent RNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 52082 | 55171 |
| YP_001828675.1 | NC_010576_p27 | hypothetical protein | singleton | unknown function | unknown function | 1 | 25629 | 26000 |
| YP_001828691.1 | NC_010576_p43 | hypothetical protein | phrog_4079 | unknown function | unknown function | 1 | 31216 | 31863 |
| YP_001828701.1 | NC_010576_p53 | hypothetical protein | phrog_17887 | unknown function | unknown function | 1 | 37125 | 38246 |
| YP_001828697.1 | NC_010576_p49 | hypothetical protein | singleton | unknown function | unknown function | 1 | 34682 | 35017 |
| YP_001828680.1 | NC_010576_p32 | hypothetical protein | singleton | unknown function | unknown function | 1 | 27745 | 28212 |
| YP_001828653.1 | NC_010576_p5 | hypothetical protein | phrog_4321 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 1729 | 2124 |
| YP_001828663.1 | NC_010576_p15 | hypothetical protein | phrog_4282 | unknown function | unknown function | 1 | 11449 | 11859 |
| YP_001828683.1 | NC_010576_p35 | hypothetical protein | singleton | unknown function | unknown function | 1 | 28677 | 28862 |
| YP_001828650.1 | NC_010576_p2 | hypothetical protein | phrog_17025 | unknown function | unknown function | 1 | 652 | 963 |
| YP_001828714.1 | NC_010576_p66 | hypothetical protein | phrog_4787 | single strand annealing protein | DNA, RNA and nucleotide metabolism | 1 | 46697 | 47176 |
| YP_001828664.1 | NC_010576_p16 | hypothetical protein | phrog_4338 | unknown function | unknown function | 1 | 11919 | 12449 |
| YP_001828713.1 | NC_010576_p65 | hypothetical protein | singleton | unknown function | unknown function | 1 | 45983 | 46462 |
| YP_001828665.1 | NC_010576_p17 | structural protein | phrog_5 | tail completion or Neck1 protein | connector | 1 | 12453 | 12839 |
| YP_001828712.1 | NC_010576_p64 | transcriptionnal regulator | phrog_3855 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 45744 | 45986 |
| YP_001828707.1 | NC_010576_p59 | hypothetical protein | singleton | unknown function | unknown function | 1 | 43635 | 44210 |
| YP_001828657.1 | NC_010576_p9 | portal protein | phrog_12 | portal protein | head and packaging | 1 | 5627 | 6970 |
| YP_001828705.1 | NC_010576_p57 | hypothetical protein | singleton | unknown function | unknown function | 1 | 42944 | 43306 |
| YP_001828693.1 | NC_010576_p45 | hypothetical protein | singleton | unknown function | unknown function | 1 | 32193 | 32435 |
| YP_001828715.1 | NC_010576_p67 | helicase | phrog_62 | DNA helicase | DNA, RNA and nucleotide metabolism | 1 | 47186 | 48442 |
| YP_001828685.1 | NC_010576_p37 | hypothetical protein | singleton | unknown function | unknown function | 1 | 29251 | 29556 |
| YP_001828651.1 | NC_010576_p3 | holin | phrog_6918 | holin | lysis | 1 | 964 | 1368 |
| YP_001828668.1 | NC_010576_p20 | structural protein | phrog_6253 | minor tail protein | tail | 1 | 20521 | 22284 |
| YP_001828699.1 | NC_010576_p51 | hypothetical protein | phrog_2152 | unknown function | unknown function | 1 | 35832 | 36653 |
| YP_001828655.1 | NC_010576_p7 | structural protein | phrog_14126 | unknown function | unknown function | 1 | 2501 | 3889 |
| YP_001828682.1 | NC_010576_p34 | hypothetical protein | singleton | unknown function | unknown function | 1 | 28464 | 28676 |
| YP_001828674.1 | NC_010576_p26 | hypothetical protein | singleton | unknown function | unknown function | 1 | 25380 | 25592 |
| YP_001828688.1 | NC_010576_p40 | hypothetical protein | phrog_17482 | unknown function | unknown function | 1 | 30262 | 30510 |
| YP_001828667.1 | NC_010576_p19 | tail protein | phrog_202 | distal tail protein Dit | tail | 1 | 18816 | 20459 |
| YP_001828669.1 | NC_010576_p21 | structural protein | phrog_19556 | tail fiber protein; host specificity | tail | 1 | 22300 | 23673 |
| YP_001828677.1 | NC_010576_p29 | hypothetical protein | singleton | unknown function | unknown function | 1 | 26281 | 26616 |
| YP_001828660.1 | NC_010576_p12 | structural protein | phrog_78 | tail terminator | connector | 1 | 9376 | 9720 |
| YP_001828690.1 | NC_010576_p42 | hypothetical protein | singleton | unknown function | unknown function | 1 | 30798 | 31073 |
| YP_001828654.1 | NC_010576_p6 | structural protein | phrog_4247 | virion structural protein | head and packaging | 1 | 2139 | 2504 |
| YP_001828702.1 | NC_010576_p54 | hypothetical protein | singleton | unknown function | unknown function | 1 | 38236 | 38541 |
| YP_001828686.1 | NC_010576_p38 | hypothetical protein | singleton | unknown function | unknown function | 1 | 29621 | 29959 |
| YP_001828704.1 | NC_010576_p56 | hypothetical protein | singleton | unknown function | unknown function | 1 | 42548 | 42838 |
| YP_001828696.1 | NC_010576_p48 | hypothetical protein | singleton | unknown function | unknown function | 1 | 34177 | 34695 |
| YP_001828670.1 | NC_010576_p22 | hypothetical protein | phrog_8250 | unknown function | unknown function | 1 | 23685 | 23921 |
| YP_001828706.1 | NC_010576_p58 | hypothetical protein | phrog_10686 | unknown function | unknown function | 1 | 43351 | 43635 |
| YP_001828661.1 | NC_010576_p13 | major structural protein | phrog_2645 | major tail protein | tail | 1 | 9741 | 10478 |
| YP_001828684.1 | NC_010576_p36 | hypothetical protein | singleton | unknown function | unknown function | 1 | 28868 | 29239 |