| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_010807 |
Definition |
Salmonella phage phiSG-JL2, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Autographiviridae; Studiervirinae; Teetrevirus; Salmonella virus SG-JL2. |
DB of origin |
REFSEQ |
Length |
38815 |
Host Name |
Salmonella enterica |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
55 |
%GC |
50.86 |
Number of singletons |
0 |
Number of paralogs |
4 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_001949793.1 | NC_010807_p50 | phage lambda Rz-like lysis protein | phrog_1327 | Rz-like spanin | lysis | 1 | 35769 | 36221 |
| YP_001949786.1 | NC_010807_p43 | internal virion protein A | phrog_308 | internal virion protein | head and packaging | 1 | 25914 | 26324 |
| YP_001949751.1 | NC_010807_p8 | gp1.05 | phrog_6440 | unknown function | unknown function | 1 | 6449 | 6958 |
| YP_001949757.1 | NC_010807_p14 | gp1.7 | phrog_4943 | unknown function | unknown function | 1 | 9005 | 9496 |
| YP_001949758.1 | NC_010807_p15 | hypothetical protein | phrog_1312 | unknown function | unknown function | 1 | 9483 | 9629 |
| YP_001949788.1 | NC_010807_p45 | internal virion protein C | phrog_1339 | internal virion protein | head and packaging | 1 | 26923 | 29166 |
| YP_001949777.1 | NC_010807_p34 | hypothetical protein | phrog_1447 | unknown function | unknown function | 1 | 17910 | 18155 |
| YP_001949752.1 | NC_010807_p9 | hypothetical protein | phrog_2490 | unknown function | unknown function | 1 | 7051 | 7191 |
| YP_001949764.1 | NC_010807_p21 | gp4A | phrog_239 | DNA primase/helicase | DNA, RNA and nucleotide metabolism | 1 | 11619 | 13319 |
| YP_001949769.1 | NC_010807_p26 | hypothetical protein | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 13993 | 16107 |
| YP_001949766.1 | NC_010807_p23 | gp4.15 | phrog_37827 | unknown function | unknown function | 1 | 11885 | 11992 |
| YP_001949761.1 | NC_010807_p18 | endonuclease I | phrog_945 | endonuclease | DNA, RNA and nucleotide metabolism | 1 | 10531 | 10992 |
| YP_001949772.1 | NC_010807_p29 | hypothetical protein | phrog_1334 | unknown function | unknown function | 1 | 16426 | 16635 |
| YP_001949760.1 | NC_010807_p17 | single-stranded DNA-binding protein | phrog_112 | Gp2.5-like ssDNA binding protein and ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 9833 | 10531 |
| YP_001949798.1 | NC_010807_p55 | hypothetical protein | phrog_2193 | unknown function | unknown function | 1 | 38203 | 38352 |
| YP_001949754.1 | NC_010807_p11 | ATP-dependent DNA ligase | phrog_114 | ATP-dependent DNA ligase | DNA, RNA and nucleotide metabolism | 1 | 7564 | 8580 |
| YP_001949791.1 | NC_010807_p48 | type II holin | phrog_920 | holin | lysis | 1 | 35206 | 35409 |
| YP_001949749.1 | NC_010807_p6 | protein kinase | phrog_2828 | serine-threonine kinase | other | 1 | 2516 | 3625 |
| YP_001949768.1 | NC_010807_p25 | hypothetical protein | phrog_2254 | unknown function | unknown function | 1 | 13641 | 13925 |
| YP_001949773.1 | NC_010807_p30 | host recBCD nuclease inhibitor | phrog_4790 | host RecBCD nuclease inhibitor | moron, auxiliary metabolic gene and host takeover | 1 | 16632 | 16814 |
| YP_001949792.1 | NC_010807_p49 | DNA packaging protein, small subunit | phrog_1351 | terminase small subunit | head and packaging | 1 | 35413 | 35679 |
| YP_001949745.1 | NC_010807_p2 | gp0.3B | phrog_2226 | SAM-dependent methyltransferase | other | 1 | 1131 | 1508 |
| YP_001949783.1 | NC_010807_p40 | major capsid protein | phrog_267 | major head protein | head and packaging | 1 | 21568 | 22614 |
| YP_001949774.1 | NC_010807_p31 | exonuclease | phrog_107 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 16811 | 17722 |
| YP_001949748.1 | NC_010807_p5 | gp0.6A | phrog_2385 | unknown function | unknown function | 1 | 2105 | 2344 |
| YP_001949781.1 | NC_010807_p38 | capsid assembly protein | phrog_1052 | head assembly | head and packaging | 1 | 20479 | 21411 |
| YP_001949778.1 | NC_010807_p35 | hypothetical protein | phrog_1391 | unknown function | unknown function | 1 | 18160 | 18411 |
| YP_001949767.1 | NC_010807_p24 | hypothetical protein | phrog_1950 | unknown function | unknown function | 1 | 13416 | 13628 |
| YP_001949771.1 | NC_010807_p28 | host protein H-NS-interacting protein | phrog_1452 | Gp5.5-like host HNS inhibition | moron, auxiliary metabolic gene and host takeover | 1 | 16124 | 16429 |
| YP_001949756.1 | NC_010807_p13 | hypothetical protein | phrog_1777 | unknown function | unknown function | 1 | 8748 | 9005 |
| YP_001949782.1 | NC_010807_p39 | major capsid protein | phrog_267 | major head protein | head and packaging | 1 | 21568 | 22748 |
| YP_001949796.1 | NC_010807_p53 | hypothetical protein | phrog_8982 | unknown function | unknown function | 1 | 36845 | 37078 |
| YP_001949759.1 | NC_010807_p16 | inhibitor of host bacterial RNA polymerase | phrog_1307 | RNA polymerase inhibitor | DNA, RNA and nucleotide metabolism | 1 | 9616 | 9780 |
| YP_001949762.1 | NC_010807_p19 | lysozyme | phrog_822 | amidase | lysis | 1 | 10985 | 11440 |
| YP_001949765.1 | NC_010807_p22 | gp4B | phrog_239 | DNA primase/helicase | DNA, RNA and nucleotide metabolism | 1 | 11805 | 13319 |
| YP_001949789.1 | NC_010807_p46 | internal virion protein D | phrog_342 | internal virion protein with endolysin domain | head and packaging | 1 | 29185 | 33147 |
| YP_001949753.1 | NC_010807_p10 | host dGTPase inhibitor | phrog_2949 | dGTPase inhibitor; target for F exclusion | other | 1 | 7191 | 7469 |
| YP_001949776.1 | NC_010807_p33 | gp6.3 | phrog_5008 | unknown function | unknown function | 1 | 17704 | 17817 |
| YP_001949750.1 | NC_010807_p7 | T3/T7-like RNA polymerase | phrog_414 | RNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 3696 | 6350 |
| YP_001949794.1 | NC_010807_p51 | phage lambda Rz1-like protein | phrog_4306 | Rz-like spanin | lysis | 1 | 35884 | 36138 |
| YP_001949763.1 | NC_010807_p20 | gp3.7 | phrog_17413 | unknown function | unknown function | 1 | 11445 | 11552 |
| YP_001949747.1 | NC_010807_p4 | gp0.6B | phrog_2385 | unknown function | unknown function | 1 | 2105 | 2501 |
| YP_001949780.1 | NC_010807_p37 | hypothetical protein | phrog_449 | head-tail adaptor | connector | 1 | 18770 | 20377 |
| YP_001949770.1 | NC_010807_p27 | gp5.5-5.7 | phrog_17900 | unknown function | unknown function | 1 | 16124 | 16635 |
| YP_001949785.1 | NC_010807_p42 | hypothetical protein | phrog_457 | tail protein | tail | 1 | 23436 | 25841 |
| YP_001949795.1 | NC_010807_p52 | hypothetical protein | phrog_38 | terminase large subunit | head and packaging | 1 | 36196 | 37959 |
| YP_001949744.1 | NC_010807_p1 | gp0.3 | phrog_2226 | SAM-dependent methyltransferase | other | 1 | 1050 | 1508 |
| YP_001949779.1 | NC_010807_p36 | tail assembly protein | phrog_1320 | host range and adsorption protein | moron, auxiliary metabolic gene and host takeover | 1 | 18439 | 18759 |
| YP_001949784.1 | NC_010807_p41 | tail tubular protein A | phrog_446 | tail protein | tail | 1 | 22830 | 23420 |
| YP_001949797.1 | NC_010807_p54 | hypothetical protein | phrog_8173 | unknown function | unknown function | 1 | 37382 | 37510 |
| YP_001949787.1 | NC_010807_p44 | internal virion protein B | phrog_805 | internal virion protein | head and packaging | 1 | 26327 | 26920 |
| YP_001949775.1 | NC_010807_p32 | gp6.1 | phrog_36692 | unknown function | unknown function | 1 | 16848 | 17078 |
| YP_001949746.1 | NC_010807_p3 | gp0.45 | phrog_6500 | unknown function | unknown function | 1 | 1730 | 1930 |
| YP_001949790.1 | NC_010807_p47 | hypothetical protein | phrog_6256 | tail fiber protein | tail | 1 | 33219 | 35195 |
| YP_001949755.1 | NC_010807_p12 | gp1.5 | phrog_10145 | unknown function | unknown function | 1 | 8658 | 8735 |