Genomic map of Salmonella phage phiSG-JL2 (NC_010807)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_010807
Definition
Salmonella phage phiSG-JL2, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Autographiviridae; Studiervirinae; Teetrevirus; Salmonella virus SG-JL2.
DB of origin
REFSEQ
Length
38815
Host Name
Salmonella enterica
Host domain
Bacteria
Is prophage?
undef
Number of proteins
55
%GC
50.86
Number of singletons
0
Number of paralogs
4

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_001949793.1 NC_010807_p50 phage lambda Rz-like lysis protein phrog_1327 Rz-like spanin lysis 1 35769 36221
YP_001949786.1 NC_010807_p43 internal virion protein A phrog_308 internal virion protein head and packaging 1 25914 26324
YP_001949751.1 NC_010807_p8 gp1.05 phrog_6440 unknown function unknown function 1 6449 6958
YP_001949757.1 NC_010807_p14 gp1.7 phrog_4943 unknown function unknown function 1 9005 9496
YP_001949758.1 NC_010807_p15 hypothetical protein phrog_1312 unknown function unknown function 1 9483 9629
YP_001949788.1 NC_010807_p45 internal virion protein C phrog_1339 internal virion protein head and packaging 1 26923 29166
YP_001949777.1 NC_010807_p34 hypothetical protein phrog_1447 unknown function unknown function 1 17910 18155
YP_001949752.1 NC_010807_p9 hypothetical protein phrog_2490 unknown function unknown function 1 7051 7191
YP_001949764.1 NC_010807_p21 gp4A phrog_239 DNA primase/helicase DNA, RNA and nucleotide metabolism 1 11619 13319
YP_001949769.1 NC_010807_p26 hypothetical protein phrog_17 DNA polymerase DNA, RNA and nucleotide metabolism 1 13993 16107
YP_001949766.1 NC_010807_p23 gp4.15 phrog_37827 unknown function unknown function 1 11885 11992
YP_001949761.1 NC_010807_p18 endonuclease I phrog_945 endonuclease DNA, RNA and nucleotide metabolism 1 10531 10992
YP_001949772.1 NC_010807_p29 hypothetical protein phrog_1334 unknown function unknown function 1 16426 16635
YP_001949760.1 NC_010807_p17 single-stranded DNA-binding protein phrog_112 Gp2.5-like ssDNA binding protein and ssDNA annealing protein DNA, RNA and nucleotide metabolism 1 9833 10531
YP_001949798.1 NC_010807_p55 hypothetical protein phrog_2193 unknown function unknown function 1 38203 38352
YP_001949754.1 NC_010807_p11 ATP-dependent DNA ligase phrog_114 ATP-dependent DNA ligase DNA, RNA and nucleotide metabolism 1 7564 8580
YP_001949791.1 NC_010807_p48 type II holin phrog_920 holin lysis 1 35206 35409
YP_001949749.1 NC_010807_p6 protein kinase phrog_2828 serine-threonine kinase other 1 2516 3625
YP_001949768.1 NC_010807_p25 hypothetical protein phrog_2254 unknown function unknown function 1 13641 13925
YP_001949773.1 NC_010807_p30 host recBCD nuclease inhibitor phrog_4790 host RecBCD nuclease inhibitor moron, auxiliary metabolic gene and host takeover 1 16632 16814
YP_001949792.1 NC_010807_p49 DNA packaging protein, small subunit phrog_1351 terminase small subunit head and packaging 1 35413 35679
YP_001949745.1 NC_010807_p2 gp0.3B phrog_2226 SAM-dependent methyltransferase other 1 1131 1508
YP_001949783.1 NC_010807_p40 major capsid protein phrog_267 major head protein head and packaging 1 21568 22614
YP_001949774.1 NC_010807_p31 exonuclease phrog_107 exonuclease DNA, RNA and nucleotide metabolism 1 16811 17722
YP_001949748.1 NC_010807_p5 gp0.6A phrog_2385 unknown function unknown function 1 2105 2344
YP_001949781.1 NC_010807_p38 capsid assembly protein phrog_1052 head assembly head and packaging 1 20479 21411
YP_001949778.1 NC_010807_p35 hypothetical protein phrog_1391 unknown function unknown function 1 18160 18411
YP_001949767.1 NC_010807_p24 hypothetical protein phrog_1950 unknown function unknown function 1 13416 13628
YP_001949771.1 NC_010807_p28 host protein H-NS-interacting protein phrog_1452 Gp5.5-like host HNS inhibition moron, auxiliary metabolic gene and host takeover 1 16124 16429
YP_001949756.1 NC_010807_p13 hypothetical protein phrog_1777 unknown function unknown function 1 8748 9005
YP_001949782.1 NC_010807_p39 major capsid protein phrog_267 major head protein head and packaging 1 21568 22748
YP_001949796.1 NC_010807_p53 hypothetical protein phrog_8982 unknown function unknown function 1 36845 37078
YP_001949759.1 NC_010807_p16 inhibitor of host bacterial RNA polymerase phrog_1307 RNA polymerase inhibitor DNA, RNA and nucleotide metabolism 1 9616 9780
YP_001949762.1 NC_010807_p19 lysozyme phrog_822 amidase lysis 1 10985 11440
YP_001949765.1 NC_010807_p22 gp4B phrog_239 DNA primase/helicase DNA, RNA and nucleotide metabolism 1 11805 13319
YP_001949789.1 NC_010807_p46 internal virion protein D phrog_342 internal virion protein with endolysin domain head and packaging 1 29185 33147
YP_001949753.1 NC_010807_p10 host dGTPase inhibitor phrog_2949 dGTPase inhibitor; target for F exclusion other 1 7191 7469
YP_001949776.1 NC_010807_p33 gp6.3 phrog_5008 unknown function unknown function 1 17704 17817
YP_001949750.1 NC_010807_p7 T3/T7-like RNA polymerase phrog_414 RNA polymerase DNA, RNA and nucleotide metabolism 1 3696 6350
YP_001949794.1 NC_010807_p51 phage lambda Rz1-like protein phrog_4306 Rz-like spanin lysis 1 35884 36138
YP_001949763.1 NC_010807_p20 gp3.7 phrog_17413 unknown function unknown function 1 11445 11552
YP_001949747.1 NC_010807_p4 gp0.6B phrog_2385 unknown function unknown function 1 2105 2501
YP_001949780.1 NC_010807_p37 hypothetical protein phrog_449 head-tail adaptor connector 1 18770 20377
YP_001949770.1 NC_010807_p27 gp5.5-5.7 phrog_17900 unknown function unknown function 1 16124 16635
YP_001949785.1 NC_010807_p42 hypothetical protein phrog_457 tail protein tail 1 23436 25841
YP_001949795.1 NC_010807_p52 hypothetical protein phrog_38 terminase large subunit head and packaging 1 36196 37959
YP_001949744.1 NC_010807_p1 gp0.3 phrog_2226 SAM-dependent methyltransferase other 1 1050 1508
YP_001949779.1 NC_010807_p36 tail assembly protein phrog_1320 host range and adsorption protein moron, auxiliary metabolic gene and host takeover 1 18439 18759
YP_001949784.1 NC_010807_p41 tail tubular protein A phrog_446 tail protein tail 1 22830 23420
YP_001949797.1 NC_010807_p54 hypothetical protein phrog_8173 unknown function unknown function 1 37382 37510
YP_001949787.1 NC_010807_p44 internal virion protein B phrog_805 internal virion protein head and packaging 1 26327 26920
YP_001949775.1 NC_010807_p32 gp6.1 phrog_36692 unknown function unknown function 1 16848 17078
YP_001949746.1 NC_010807_p3 gp0.45 phrog_6500 unknown function unknown function 1 1730 1930
YP_001949790.1 NC_010807_p47 hypothetical protein phrog_6256 tail fiber protein tail 1 33219 35195
YP_001949755.1 NC_010807_p12 gp1.5 phrog_10145 unknown function unknown function 1 8658 8735