| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_010808 |
Definition |
Staphylococcus phage phiMR25, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Phietavirus. |
DB of origin |
REFSEQ |
Length |
44342 |
Host Name |
Staphylococcus aureus |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
70 |
%GC |
34.32 |
Number of singletons |
3 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_001949824.1 | NC_010808_p26 | hypothetical protein | phrog_236 | nucleotide kinase | other | 1 | 12423 | 12680 |
| YP_001949851.1 | NC_010808_p53 | major tail protein | phrog_238 | major tail protein | tail | 1 | 24772 | 25353 |
| YP_001949820.1 | NC_010808_p22 | hypothetical protein | phrog_433 | unknown function | unknown function | 1 | 11238 | 11459 |
| YP_001949860.1 | NC_010808_p62 | hypothetical protein | phrog_134 | unknown function | unknown function | 1 | 36634 | 36807 |
| YP_001949821.1 | NC_010808_p23 | hypothetical protein | phrog_190 | Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 11469 | 11873 |
| YP_001949808.1 | NC_010808_p10 | hypothetical protein | phrog_989 | unknown function | unknown function | 1 | 5495 | 5716 |
| YP_001949844.1 | NC_010808_p46 | scaffolding protein | phrog_172 | head scaffolding protein | head and packaging | 1 | 21453 | 22073 |
| YP_001949835.1 | NC_010808_p37 | hypothetical protein | phrog_1616 | unknown function | unknown function | 1 | 15608 | 15811 |
| YP_001949814.1 | NC_010808_p16 | single stranded DNA binding protein | phrog_44 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 7370 | 7798 |
| YP_001949867.1 | NC_010808_p69 | hypothetical protein | singleton | unknown function | unknown function | 1 | 43083 | 43613 |
| YP_001949833.1 | NC_010808_p35 | hypothetical protein | phrog_278 | transcriptional regulator | transcription regulation | 1 | 15214 | 15420 |
| YP_001949823.1 | NC_010808_p25 | hypothetical protein | phrog_201 | Panton-Valentine leukocicin | DNA, RNA and nucleotide metabolism | 1 | 12064 | 12423 |
| YP_001949830.1 | NC_010808_p32 | hypothetical protein | phrog_1034 | unknown function | unknown function | 1 | 14105 | 14413 |
| YP_001949831.1 | NC_010808_p33 | hypothetical protein | phrog_266 | unknown function | unknown function | 1 | 14406 | 14654 |
| YP_001949804.1 | NC_010808_p6 | Cro-like protein | phrog_3 | transcriptional repressor | transcription regulation | 1 | 3764 | 3973 |
| YP_001949854.1 | NC_010808_p56 | tape measure protein | phrog_58 | tail length tape measure protein | tail | 1 | 26171 | 29635 |
| YP_001949853.1 | NC_010808_p55 | hypothetical protein | phrog_441 | tail assembly chaperone | tail | 1 | 25810 | 26154 |
| YP_001949862.1 | NC_010808_p64 | tail-associated cell wall hydrolase | phrog_759 | tail associated cell-wall hydrolase | other | 1 | 37284 | 39182 |
| YP_001949857.1 | NC_010808_p59 | minor structural protein | phrog_287 | minor tail protein | tail | 1 | 32520 | 34430 |
| YP_001949801.1 | NC_010808_p3 | hypothetical protein | phrog_888 | unknown function | unknown function | -1 | 2052 | 2777 |
| YP_001949813.1 | NC_010808_p15 | hypothetical protein | phrog_659 | Sak-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 6747 | 7370 |
| YP_001949818.1 | NC_010808_p20 | DNA replication protein | phrog_50 | DnaC-like helicase loader | DNA, RNA and nucleotide metabolism | 1 | 10294 | 11073 |
| YP_001949816.1 | NC_010808_p18 | hypothetical protein | singleton | unknown function | unknown function | 1 | 8872 | 9039 |
| YP_001949843.1 | NC_010808_p45 | hypothetical protein | phrog_1431 | unknown function | unknown function | 1 | 21174 | 21344 |
| YP_001949855.1 | NC_010808_p57 | minor tail protein | phrog_33 | distal tail protein Dit | tail | 1 | 29648 | 30595 |
| YP_001949841.1 | NC_010808_p43 | portal protein | phrog_64 | portal protein | head and packaging | 1 | 18561 | 20099 |
| YP_001949832.1 | NC_010808_p34 | dUTPase | phrog_173 | nucleoside triphosphate pyrophosphohydrolase | DNA, RNA and nucleotide metabolism | 1 | 14629 | 15177 |
| YP_001949850.1 | NC_010808_p52 | hypothetical protein | phrog_176 | tail terminator | connector | 1 | 24370 | 24753 |
| YP_001949834.1 | NC_010808_p36 | hypothetical protein | phrog_1122 | unknown function | unknown function | 1 | 15417 | 15611 |
| YP_001949838.1 | NC_010808_p40 | int gene activator protein, RinA | phrog_36 | transcriptional regulator | transcription regulation | 1 | 16148 | 16570 |
| YP_001949825.1 | NC_010808_p27 | hypothetical protein | phrog_987 | unknown function | unknown function | 1 | 12683 | 12883 |
| YP_001949840.1 | NC_010808_p42 | terminase, large subunit | phrog_2 | terminase large subunit | head and packaging | 1 | 17255 | 18550 |
| YP_001949847.1 | NC_010808_p49 | hypothetical protein | phrog_132 | head-tail adaptor | connector | 1 | 23380 | 23712 |
| YP_001949815.1 | NC_010808_p17 | hypothetical protein | phrog_398 | unknown function | unknown function | 1 | 7812 | 8486 |
| YP_001949836.1 | NC_010808_p38 | int gene activator protein, RinB | phrog_152 | RinB-like transcriptional activator | transcription regulation | 1 | 15777 | 15977 |
| YP_001949837.1 | NC_010808_p39 | hypothetical protein | phrog_1367 | unknown function | unknown function | 1 | 15978 | 16124 |
| YP_001949858.1 | NC_010808_p60 | hypothetical protein | phrog_257 | minor tail protein | tail | 1 | 34430 | 36253 |
| YP_001949845.1 | NC_010808_p47 | capsid protein | phrog_10 | major head protein | head and packaging | 1 | 22087 | 22995 |
| YP_001949806.1 | NC_010808_p8 | hypothetical protein | phrog_1796 | unknown function | unknown function | 1 | 4779 | 5003 |
| YP_001949819.1 | NC_010808_p21 | hypothetical protein | phrog_809 | transcriptional regulator | transcription regulation | 1 | 11067 | 11225 |
| YP_001949817.1 | NC_010808_p19 | DNA replication protein | phrog_428 | replication initiation protein | DNA, RNA and nucleotide metabolism | 1 | 9514 | 10284 |
| YP_001949810.1 | NC_010808_p12 | transcriptional regulator | phrog_11451 | CI-like repressor | transcription regulation | 1 | 5860 | 6198 |
| YP_001949829.1 | NC_010808_p31 | hypothetical protein | phrog_98 | unknown function | unknown function | 1 | 13761 | 14108 |
| YP_001949799.1 | NC_010808_p1 | integrase | phrog_1 | integrase | integration and excision | -1 | 83 | 1129 |
| YP_001949865.1 | NC_010808_p67 | holin protein | phrog_962 | holin | lysis | 1 | 40824 | 41261 |
| YP_001949811.1 | NC_010808_p13 | hypothetical protein | phrog_401 | unknown function | unknown function | 1 | 6263 | 6523 |
| YP_001949852.1 | NC_010808_p54 | hypothetical protein | phrog_183 | tail chaperone protein | tail | 1 | 25415 | 25780 |
| YP_001949839.1 | NC_010808_p41 | terminase small subunit | phrog_51 | terminase small subunit | head and packaging | 1 | 16683 | 17252 |
| YP_001949849.1 | NC_010808_p51 | hypothetical protein | phrog_5 | tail completion or Neck1 protein | connector | 1 | 24011 | 24358 |
| YP_001949848.1 | NC_010808_p50 | hypothetical protein | phrog_348 | minor head protein | head and packaging | 1 | 23709 | 24011 |
| YP_001949807.1 | NC_010808_p9 | hypothetical protein | phrog_2312 | unknown function | unknown function | 1 | 5043 | 5219 |
| YP_001949805.1 | NC_010808_p7 | anti-repressor protein | phrog_130 | anti-repressor Ant | transcription regulation | 1 | 4011 | 4778 |
| YP_001949868.1 | NC_010808_p70 | hypothetical protein | singleton | unknown function | unknown function | 1 | 43610 | 44032 |
| YP_001949803.1 | NC_010808_p5 | repressor protein | phrog_8 | transcriptional regulator | transcription regulation | -1 | 3275 | 3601 |
| YP_001949802.1 | NC_010808_p4 | hypothetical protein | phrog_87 | metallo-protease | other | -1 | 2795 | 3253 |
| YP_001949826.1 | NC_010808_p28 | hypothetical protein | phrog_258 | virulence associated | other | 1 | 12898 | 13140 |
| YP_001949864.1 | NC_010808_p66 | hypothetical protein | phrog_1262 | unknown function | unknown function | 1 | 40373 | 40768 |
| YP_001949861.1 | NC_010808_p63 | hypothetical protein | phrog_276 | unknown function | unknown function | 1 | 36848 | 37147 |
| YP_001949859.1 | NC_010808_p61 | hypothetical protein | phrog_300 | tail fiber protein | tail | 1 | 36253 | 36630 |
| YP_001949846.1 | NC_010808_p48 | hypothetical protein | phrog_390 | Arc-like repressor | transcription regulation | 1 | 23084 | 23371 |
| YP_001949800.1 | NC_010808_p2 | hypothetical protein | phrog_1412 | antitoxin mazE-like | moron, auxiliary metabolic gene and host takeover | -1 | 1340 | 2020 |
| YP_001949822.1 | NC_010808_p24 | hypothetical protein | phrog_299 | unknown function | unknown function | 1 | 11878 | 12063 |
| YP_001949827.1 | NC_010808_p29 | hypothetical protein | phrog_1241 | unknown function | unknown function | 1 | 13154 | 13360 |
| YP_001949863.1 | NC_010808_p65 | hypothetical protein | phrog_1125 | tail fiber protein | tail | 1 | 39195 | 40367 |
| YP_001949856.1 | NC_010808_p58 | minor structural protein | phrog_663 | minor head protein | head and packaging | 1 | 30604 | 32505 |
| YP_001949866.1 | NC_010808_p68 | cell wall hydrolase | phrog_635 | endolysin | lysis | 1 | 41242 | 42687 |
| YP_001949842.1 | NC_010808_p44 | head morphogenesis protein | phrog_115 | minor head protein | head and packaging | 1 | 20106 | 21101 |
| YP_001949828.1 | NC_010808_p30 | hypothetical protein | phrog_467 | unknown function | unknown function | 1 | 13363 | 13764 |
| YP_001949812.1 | NC_010808_p14 | hypothetical protein | phrog_946 | unknown function | unknown function | 1 | 6533 | 6754 |
| YP_001949809.1 | NC_010808_p11 | hypothetical protein | phrog_369 | unknown function | unknown function | 1 | 5709 | 5879 |