| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_011020 |
Definition |
Mycobacterium phage Jasper, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Fromanvirus. |
DB of origin |
REFSEQ |
Length |
50968 |
Host Name |
Mycobacterium |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
94 |
%GC |
63.71 |
Number of singletons |
0 |
Number of paralogs |
3 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_001994605.1 | NC_011020_p58 | hypothetical protein | phrog_1783 | unknown function | unknown function | -1 | 38570 | 38737 |
| YP_001994596.1 | NC_011020_p49 | hypothetical protein | phrog_364 | ribonucleoside reductase class II | DNA, RNA and nucleotide metabolism | -1 | 34723 | 35226 |
| YP_001994567.1 | NC_011020_p20 | hypothetical protein | phrog_321 | tail completion or Neck1 protein | connector | 1 | 13565 | 13960 |
| YP_001994630.1 | NC_011020_p83 | hypothetical protein | phrog_932 | unknown function | unknown function | -1 | 47354 | 47503 |
| YP_001994555.1 | NC_011020_p8 | hypothetical protein | phrog_1718 | tail protein | tail | 1 | 3909 | 4169 |
| YP_001994548.1 | NC_011020_p1 | helicase | phrog_21074 | helicase | DNA, RNA and nucleotide metabolism | 1 | 609 | 866 |
| YP_001994590.1 | NC_011020_p43 | hypothetical protein | phrog_1971 | unknown function | unknown function | -1 | 31574 | 31849 |
| YP_001994572.1 | NC_011020_p25 | tapemeasure protein | phrog_305 | tail length tape measure protein | tail | 1 | 16203 | 18683 |
| YP_001994639.1 | NC_011020_p92 | hypothetical protein | phrog_5419 | unknown function | unknown function | -1 | 49714 | 50043 |
| YP_001994595.1 | NC_011020_p48 | hypothetical protein | phrog_1781 | unknown function | unknown function | -1 | 34450 | 34680 |
| YP_001994556.1 | NC_011020_p9 | hypothetical protein | phrog_747 | unknown function | unknown function | 1 | 4177 | 4434 |
| YP_001994558.1 | NC_011020_p11 | lysin B | phrog_102 | endolysin | lysis | 1 | 5855 | 6823 |
| YP_001994579.1 | NC_011020_p32 | hypothetical protein | phrog_346 | minor tail protein | tail | 1 | 23942 | 25795 |
| YP_001994553.1 | NC_011020_p6 | tail fiber-like protein | phrog_1197 | tail protein | tail | 1 | 2119 | 3189 |
| YP_001994621.1 | NC_011020_p74 | immunity repressor | phrog_357 | transcriptional repressor | transcription regulation | -1 | 44222 | 44734 |
| YP_001994568.1 | NC_011020_p21 | hypothetical protein | phrog_123 | tail terminator | connector | 1 | 13964 | 14410 |
| YP_001994599.1 | NC_011020_p52 | hypothetical protein | phrog_1782 | site-specific recombination directionality factor RDF | integration and excision | -1 | 36186 | 36326 |
| YP_001994569.1 | NC_011020_p22 | major tail protein | phrog_117 | major tail protein | tail | 1 | 14419 | 15270 |
| YP_001994636.1 | NC_011020_p89 | hypothetical protein | phrog_11359 | DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 48673 | 48915 |
| YP_001994584.1 | NC_011020_p37 | hypothetical protein | phrog_411 | unknown function | unknown function | 1 | 28791 | 29087 |
| YP_001994591.1 | NC_011020_p44 | hypothetical protein | phrog_980 | unknown function | unknown function | -1 | 31846 | 32091 |
| YP_001994587.1 | NC_011020_p40 | hypothetical protein | phrog_2035 | unknown function | unknown function | -1 | 31169 | 31336 |
| YP_001994594.1 | NC_011020_p47 | hypothetical protein | phrog_542 | unknown function | unknown function | -1 | 34325 | 34453 |
| YP_001994559.1 | NC_011020_p12 | terminase | phrog_9 | terminase large subunit | head and packaging | 1 | 6843 | 8531 |
| YP_001994628.1 | NC_011020_p81 | hypothetical protein | phrog_2093 | unknown function | unknown function | -1 | 46508 | 46636 |
| YP_001994578.1 | NC_011020_p31 | hypothetical protein | phrog_1397 | unknown function | unknown function | 1 | 23570 | 23917 |
| YP_001994586.1 | NC_011020_p39 | hypothetical protein | phrog_12181 | unknown function | unknown function | -1 | 30864 | 31172 |
| YP_001994550.1 | NC_011020_p3 | hypothetical protein | phrog_18329 | unknown function | unknown function | 1 | 1168 | 1305 |
| YP_001994611.1 | NC_011020_p64 | hypothetical protein | phrog_2507 | unknown function | unknown function | -1 | 41141 | 41314 |
| YP_001994614.1 | NC_011020_p67 | hypothetical protein | phrog_520 | unknown function | unknown function | -1 | 41666 | 41959 |
| YP_001994562.1 | NC_011020_p15 | scaffold | phrog_233 | head scaffolding protein | head and packaging | 1 | 10907 | 11419 |
| YP_001994577.1 | NC_011020_p30 | hypothetical protein | phrog_981 | minor tail protein | tail | 1 | 23226 | 23573 |
| YP_001994620.1 | NC_011020_p73 | hypothetical protein | phrog_1809 | unknown function | unknown function | -1 | 43785 | 44180 |
| YP_001994560.1 | NC_011020_p13 | portal | phrog_104 | portal protein | head and packaging | 1 | 8528 | 9970 |
| YP_001994625.1 | NC_011020_p78 | hypothetical protein | phrog_1546 | unknown function | unknown function | -1 | 45758 | 46159 |
| YP_001994608.1 | NC_011020_p61 | hypothetical protein | phrog_1573 | DNA methyltransferase | other | -1 | 39571 | 39951 |
| YP_001994563.1 | NC_011020_p16 | capsid | phrog_10 | major head protein | head and packaging | 1 | 11429 | 12439 |
| YP_001994561.1 | NC_011020_p14 | head assembly protein | phrog_193 | head maturation protease | head and packaging | 1 | 9967 | 10848 |
| YP_001994631.1 | NC_011020_p84 | hypothetical protein | phrog_4631 | unknown function | unknown function | -1 | 47500 | 47817 |
| YP_001994549.1 | NC_011020_p2 | WhiB/HNH endo | phrog_333 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 863 | 1171 |
| YP_001994616.1 | NC_011020_p69 | hypothetical protein | phrog_1763 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 42280 | 42462 |
| YP_001994551.1 | NC_011020_p4 | hypothetical protein | phrog_226 | minor tail protein | tail | 1 | 1356 | 1790 |
| YP_001994588.1 | NC_011020_p41 | hypothetical protein | phrog_6835 | unknown function | unknown function | -1 | 31333 | 31494 |
| YP_001994575.1 | NC_011020_p28 | minor tail protein | phrog_110 | minor tail protein | tail | 1 | 20943 | 22745 |
| YP_001994600.1 | NC_011020_p53 | recombination directionality factor | phrog_221 | metallo-phosphoesterase | other | -1 | 36326 | 37093 |
| YP_001994627.1 | NC_011020_p80 | hypothetical protein | phrog_861 | site-specific recombination directionality factor RDF | integration and excision | -1 | 46344 | 46511 |
| YP_001994610.1 | NC_011020_p63 | helicase/DnaB | phrog_243 | DnaB-like replicative helicase | DNA, RNA and nucleotide metabolism | -1 | 40320 | 41141 |
| YP_001994637.1 | NC_011020_p90 | hypothetical protein | phrog_1387 | unknown function | unknown function | -1 | 48980 | 49180 |
| YP_001994576.1 | NC_011020_p29 | hypothetical protein | phrog_352 | minor tail protein | tail | 1 | 22783 | 23229 |
| YP_001994609.1 | NC_011020_p62 | glutaredoxin | phrog_22 | thioredoxin domain | DNA, RNA and nucleotide metabolism | -1 | 39948 | 40214 |
| YP_001994597.1 | NC_011020_p50 | hypothetical protein | phrog_499 | unknown function | unknown function | -1 | 35223 | 35405 |
| YP_001994566.1 | NC_011020_p19 | hypothetical protein | phrog_320 | head closure Hc1 | connector | 1 | 13203 | 13565 |
| YP_001994615.1 | NC_011020_p68 | hypothetical protein | phrog_2184 | unknown function | unknown function | -1 | 41956 | 42276 |
| YP_001994603.1 | NC_011020_p56 | DNA topoisomerase-primase | phrog_47 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 37709 | 38179 |
| YP_001994607.1 | NC_011020_p60 | endo VII | phrog_307 | endonuclease VII | DNA, RNA and nucleotide metabolism | -1 | 39013 | 39501 |
| YP_001994581.1 | NC_011020_p34 | hypothetical protein | phrog_644 | unknown function | unknown function | 1 | 27281 | 27682 |
| YP_001994619.1 | NC_011020_p72 | hypothetical protein | phrog_1584 | unknown function | unknown function | -1 | 43462 | 43788 |
| YP_001994571.1 | NC_011020_p24 | tail scaffold protein | phrog_330 | tail assembly chaperone | tail | 1 | 15392 | 15769 |
| YP_001994601.1 | NC_011020_p54 | hypothetical protein | phrog_1503 | unknown function | unknown function | -1 | 37090 | 37260 |
| YP_001994604.1 | NC_011020_p57 | DNA primase | phrog_360 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 38049 | 38591 |
| YP_001994585.2 | NC_011020_p38 | serine integrase | phrog_95 | integrase | integration and excision | 1 | 29239 | 30741 |
| YP_001994612.1 | NC_011020_p65 | hypothetical protein | phrog_1705 | unknown function | unknown function | -1 | 41311 | 41442 |
| YP_001994618.1 | NC_011020_p71 | RecB | phrog_69 | exonuclease | DNA, RNA and nucleotide metabolism | -1 | 42645 | 43469 |
| YP_001994626.1 | NC_011020_p79 | hypothetical protein | phrog_1155 | unknown function | unknown function | -1 | 46156 | 46344 |
| YP_001994592.1 | NC_011020_p45 | hypothetical protein | phrog_383 | unknown function | unknown function | -1 | 32088 | 32453 |
| YP_001994593.1 | NC_011020_p46 | DNA polymerase | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | -1 | 32455 | 34284 |
| YP_001994554.1 | NC_011020_p7 | hypothetical protein | phrog_553 | minor tail protein | tail | 1 | 3199 | 3897 |
| YP_001994573.1 | NC_011020_p26 | minor tail protein | phrog_106 | minor tail protein | tail | 1 | 18707 | 20764 |
| YP_001994552.1 | NC_011020_p5 | hypothetical protein | phrog_26979 | unknown function | unknown function | 1 | 1923 | 2102 |
| YP_001994606.1 | NC_011020_p59 | hypothetical protein | phrog_397 | unknown function | unknown function | -1 | 38734 | 38994 |
| YP_001994582.1 | NC_011020_p35 | hypothetical protein | phrog_1560 | unknown function | unknown function | 1 | 27691 | 27882 |
| YP_001994570.1 | NC_011020_p23 | tail scaffold protein | phrog_393 | tail assembly chaperone | tail | 1 | 15392 | 16191 |
| YP_001994598.1 | NC_011020_p51 | hypothetical protein | phrog_354 | sigma-K factor | transcription regulation | -1 | 35402 | 36193 |
| YP_001994624.1 | NC_011020_p77 | hypothetical protein | phrog_1387 | unknown function | unknown function | -1 | 45558 | 45761 |
| YP_001994638.1 | NC_011020_p91 | hypothetical protein | phrog_5542 | unknown function | unknown function | -1 | 49177 | 49542 |
| YP_001994589.1 | NC_011020_p42 | hypothetical protein | phrog_1860 | unknown function | unknown function | -1 | 31482 | 31568 |
| YP_001994623.1 | NC_011020_p76 | hypothetical protein | phrog_1720 | unknown function | unknown function | -1 | 45292 | 45561 |
| YP_001994629.1 | NC_011020_p82 | DNA methylase | phrog_363 | DNA methyltransferase | other | -1 | 46679 | 47335 |
| YP_001994565.1 | NC_011020_p18 | hypothetical protein | phrog_137 | head-tail adaptor Ad1 | connector | 1 | 12754 | 13203 |
| YP_001994602.1 | NC_011020_p55 | hypothetical protein | phrog_474 | phosphofructokinase | other | -1 | 37257 | 37712 |
| YP_001994641.1 | NC_011020_p94 | hypothetical protein | phrog_11359 | DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 50400 | 50624 |
| YP_001994583.1 | NC_011020_p36 | hypothetical protein | phrog_754 | minor tail protein | tail | 1 | 27882 | 28670 |
| YP_001994617.1 | NC_011020_p70 | hypothetical protein | phrog_5961 | unknown function | unknown function | -1 | 42459 | 42617 |
| YP_001994557.1 | NC_011020_p10 | lysin A | phrog_317 | endolysin | lysis | 1 | 4444 | 5865 |
| YP_001994580.1 | NC_011020_p33 | tail protein | phrog_382 | minor tail protein with lysin activity | tail | 1 | 25788 | 27272 |
| YP_001994564.1 | NC_011020_p17 | hypothetical protein | phrog_1857 | head-tail connector protein | connector | 1 | 12518 | 12754 |
| YP_001994632.1 | NC_011020_p85 | hypothetical protein | phrog_16282 | unknown function | unknown function | -1 | 47946 | 48014 |
| YP_001994635.1 | NC_011020_p88 | hypothetical protein | phrog_30972 | unknown function | unknown function | -1 | 48478 | 48543 |
| YP_001994633.1 | NC_011020_p86 | hypothetical protein | phrog_2093 | unknown function | unknown function | -1 | 48072 | 48251 |
| YP_001994613.1 | NC_011020_p66 | hypothetical protein | phrog_780 | unknown function | unknown function | -1 | 41439 | 41666 |
| YP_001994640.1 | NC_011020_p93 | hypothetical protein | phrog_828 | unknown function | unknown function | -1 | 50142 | 50345 |
| YP_001994622.1 | NC_011020_p75 | hypothetical protein | phrog_439 | site-specific recombination directionality factor RDF | integration and excision | -1 | 44996 | 45295 |
| YP_001994634.1 | NC_011020_p87 | hypothetical protein | phrog_9318 | unknown function | unknown function | -1 | 48248 | 48418 |
| YP_001994574.1 | NC_011020_p27 | hypothetical protein | phrog_1543 | minor tail protein | tail | 1 | 20761 | 20943 |