| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_011021 |
Definition |
Mycobacterium phage Lockley, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Fromanvirus. |
DB of origin |
REFSEQ |
Length |
51478 |
Host Name |
Mycobacterium |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
90 |
%GC |
63.42 |
Number of singletons |
2 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_001994717.1 | NC_011021_p76 | hypothetical protein | phrog_6510 | unknown function | unknown function | -1 | 46807 | 46989 |
| YP_001994675.1 | NC_011021_p34 | hypothetical protein | phrog_644 | unknown function | unknown function | 1 | 27468 | 27788 |
| YP_001994711.1 | NC_011021_p70 | hypothetical protein | phrog_1584 | unknown function | unknown function | -1 | 44455 | 44778 |
| YP_001994720.1 | NC_011021_p79 | hypothetical protein | phrog_1155 | unknown function | unknown function | -1 | 47461 | 47586 |
| YP_001994707.1 | NC_011021_p66 | hypothetical protein | phrog_2184 | unknown function | unknown function | -1 | 42737 | 43057 |
| YP_001994655.1 | NC_011021_p14 | scaffold | phrog_233 | head scaffolding protein | head and packaging | 1 | 11001 | 11513 |
| YP_001994701.1 | NC_011021_p60 | DnaB-like helicase | phrog_243 | DnaB-like replicative helicase | DNA, RNA and nucleotide metabolism | -1 | 40961 | 41782 |
| YP_001994696.1 | NC_011021_p55 | hypothetical protein | phrog_1783 | unknown function | unknown function | -1 | 39025 | 39189 |
| YP_001994677.1 | NC_011021_p36 | hypothetical protein | phrog_754 | minor tail protein | tail | 1 | 27986 | 28873 |
| YP_001994656.1 | NC_011021_p15 | capsid | phrog_10 | major head protein | head and packaging | 1 | 11523 | 12521 |
| YP_001994697.1 | NC_011021_p56 | hypothetical protein | phrog_397 | unknown function | unknown function | -1 | 39257 | 39400 |
| YP_001994685.1 | NC_011021_p44 | DNA polymerase I | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | -1 | 32543 | 34369 |
| YP_001994650.1 | NC_011021_p9 | lysin A | phrog_317 | endolysin | lysis | 1 | 4538 | 5959 |
| YP_001994690.1 | NC_011021_p49 | hypothetical protein | phrog_1782 | site-specific recombination directionality factor RDF | integration and excision | -1 | 36444 | 36581 |
| YP_001994686.1 | NC_011021_p45 | hypothetical protein | phrog_1781 | unknown function | unknown function | -1 | 34532 | 34762 |
| YP_001994643.1 | NC_011021_p2 | WhiB/HNH endo | phrog_333 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 739 | 1035 |
| YP_001994727.1 | NC_011021_p86 | hypothetical protein | phrog_16282 | unknown function | unknown function | -1 | 49017 | 49085 |
| YP_001994679.1 | NC_011021_p38 | serine integrase | phrog_95 | integrase | integration and excision | 1 | 29430 | 30932 |
| YP_001994646.1 | NC_011021_p5 | tail fiber-like protein | phrog_1197 | tail protein | tail | 1 | 2199 | 3269 |
| YP_001994700.1 | NC_011021_p59 | glutaredoxin | phrog_22 | thioredoxin domain | DNA, RNA and nucleotide metabolism | -1 | 40580 | 40855 |
| YP_001994666.1 | NC_011021_p25 | minor tail protein | phrog_106 | minor tail protein | tail | 1 | 18795 | 20852 |
| YP_001994669.1 | NC_011021_p28 | hypothetical protein | phrog_352 | minor tail protein | tail | 1 | 22891 | 23337 |
| YP_001994705.1 | NC_011021_p64 | hypothetical protein | phrog_1705 | unknown function | unknown function | -1 | 42328 | 42450 |
| YP_001994708.1 | NC_011021_p67 | hypothetical protein | phrog_1763 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 43061 | 43243 |
| YP_001994721.1 | NC_011021_p80 | hypothetical protein | phrog_1155 | unknown function | unknown function | -1 | 47583 | 47771 |
| YP_001994703.1 | NC_011021_p62 | hypothetical protein | phrog_2864 | unknown function | unknown function | -1 | 41991 | 42158 |
| YP_001994714.1 | NC_011021_p73 | hypothetical protein | phrog_439 | site-specific recombination directionality factor RDF | integration and excision | -1 | 45986 | 46285 |
| YP_001994651.1 | NC_011021_p10 | lysin B | phrog_102 | endolysin | lysis | 1 | 5949 | 6917 |
| YP_001994684.1 | NC_011021_p43 | hypothetical protein | phrog_383 | unknown function | unknown function | -1 | 32166 | 32522 |
| YP_001994718.1 | NC_011021_p77 | hypothetical protein | phrog_1387 | unknown function | unknown function | -1 | 46986 | 47186 |
| YP_001994702.1 | NC_011021_p61 | hypothetical protein | singleton | unknown function | unknown function | -1 | 41785 | 42045 |
| YP_001994658.1 | NC_011021_p17 | hypothetical protein | phrog_137 | head-tail adaptor Ad1 | connector | 1 | 12843 | 13292 |
| YP_001994689.1 | NC_011021_p48 | hypothetical protein | phrog_354 | sigma-K factor | transcription regulation | -1 | 35460 | 36245 |
| YP_001994710.1 | NC_011021_p69 | hypothetical protein | phrog_13709 | unknown function | unknown function | -1 | 44243 | 44458 |
| YP_001994652.1 | NC_011021_p11 | terminase large subunit | phrog_9 | terminase large subunit | head and packaging | 1 | 6937 | 8625 |
| YP_001994719.1 | NC_011021_p78 | hypothetical protein | phrog_3472 | unknown function | unknown function | -1 | 47183 | 47464 |
| YP_001994660.1 | NC_011021_p19 | hypothetical protein | phrog_321 | tail completion or Neck1 protein | connector | 1 | 13654 | 14049 |
| YP_001994648.1 | NC_011021_p7 | hypothetical protein | phrog_1718 | tail protein | tail | 1 | 4003 | 4263 |
| YP_001994673.1 | NC_011021_p32 | hypothetical protein | phrog_382 | minor tail protein with lysin activity | tail | 1 | 25896 | 26933 |
| YP_001994726.1 | NC_011021_p85 | hypothetical protein | phrog_932 | unknown function | unknown function | -1 | 48736 | 48888 |
| YP_001994694.1 | NC_011021_p53 | DNA topoisomerase-primase | phrog_47 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 38164 | 38634 |
| YP_001994674.1 | NC_011021_p33 | tail protein | phrog_16290 | minor tail protein | tail | 1 | 26956 | 27375 |
| YP_001994728.1 | NC_011021_p87 | DNA methylase | phrog_363 | DNA methyltransferase | other | -1 | 49189 | 49860 |
| YP_001994693.1 | NC_011021_p52 | hypothetical protein | phrog_1167 | phosphofructokinase | other | -1 | 37532 | 38167 |
| YP_001994683.1 | NC_011021_p42 | hypothetical protein | phrog_1971 | unknown function | unknown function | -1 | 31882 | 32169 |
| YP_001994659.1 | NC_011021_p18 | hypothetical protein | phrog_320 | head closure Hc1 | connector | 1 | 13292 | 13654 |
| YP_001994723.1 | NC_011021_p82 | hypothetical protein | phrog_861 | site-specific recombination directionality factor RDF | integration and excision | -1 | 48019 | 48186 |
| YP_001994695.1 | NC_011021_p54 | DNA primase | phrog_360 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 38504 | 39046 |
| YP_001994662.1 | NC_011021_p21 | major tail protein | phrog_117 | major tail protein | tail | 1 | 14508 | 15359 |
| YP_001994670.1 | NC_011021_p29 | hypothetical protein | phrog_981 | minor tail protein | tail | 1 | 23349 | 23681 |
| YP_001994725.1 | NC_011021_p84 | hypothetical protein | phrog_9026 | unknown function | unknown function | -1 | 48308 | 48520 |
| YP_001994682.1 | NC_011021_p41 | hypothetical protein | phrog_1860 | unknown function | unknown function | -1 | 31790 | 31885 |
| YP_001994706.1 | NC_011021_p65 | hypothetical protein | phrog_520 | unknown function | unknown function | -1 | 42447 | 42740 |
| YP_001994681.1 | NC_011021_p40 | hypothetical protein | phrog_2035 | unknown function | unknown function | -1 | 31623 | 31793 |
| YP_001994645.1 | NC_011021_p4 | hypothetical protein | phrog_2830 | unknown function | unknown function | 1 | 1675 | 1905 |
| YP_001994712.1 | NC_011021_p71 | hypothetical protein | phrog_1809 | unknown function | unknown function | -1 | 44775 | 45170 |
| YP_001994699.1 | NC_011021_p58 | hypothetical protein | phrog_4334 | unknown function | unknown function | -1 | 40042 | 40488 |
| YP_001994715.1 | NC_011021_p74 | hypothetical protein | phrog_16071 | unknown function | unknown function | -1 | 46278 | 46640 |
| YP_001994692.1 | NC_011021_p51 | hypothetical protein | phrog_1503 | unknown function | unknown function | -1 | 37350 | 37535 |
| YP_001994665.1 | NC_011021_p24 | tapemeasure protein | phrog_305 | tail length tape measure protein | tail | 1 | 16291 | 18771 |
| YP_001994698.1 | NC_011021_p57 | endo VII | phrog_307 | endonuclease VII | DNA, RNA and nucleotide metabolism | -1 | 39419 | 39907 |
| YP_001994671.1 | NC_011021_p30 | hypothetical protein | phrog_1397 | unknown function | unknown function | 1 | 23678 | 24025 |
| YP_001994676.1 | NC_011021_p35 | hypothetical protein | phrog_1560 | unknown function | unknown function | 1 | 27798 | 27989 |
| YP_001994713.1 | NC_011021_p72 | repressor | phrog_357 | transcriptional repressor | transcription regulation | -1 | 45212 | 45724 |
| YP_001994654.1 | NC_011021_p13 | head assembly protein | phrog_193 | head maturation protease | head and packaging | 1 | 10061 | 10942 |
| YP_001994688.1 | NC_011021_p47 | hypothetical protein | phrog_499 | unknown function | unknown function | -1 | 35281 | 35463 |
| YP_001994722.1 | NC_011021_p81 | hypothetical protein | phrog_10460 | unknown function | unknown function | -1 | 47771 | 48016 |
| YP_001994642.1 | NC_011021_p1 | hypothetical protein | phrog_21009 | unknown function | unknown function | 1 | 603 | 758 |
| YP_001994657.1 | NC_011021_p16 | hypothetical protein | phrog_1857 | head-tail connector protein | connector | 1 | 12607 | 12843 |
| YP_001994691.1 | NC_011021_p50 | recombination directionality factor | phrog_221 | metallo-phosphoesterase | other | -1 | 36586 | 37353 |
| YP_001994653.1 | NC_011021_p12 | portal | phrog_104 | portal protein | head and packaging | 1 | 8622 | 10064 |
| YP_001994680.1 | NC_011021_p39 | hypothetical protein | phrog_12181 | unknown function | unknown function | -1 | 31054 | 31623 |
| YP_001994647.1 | NC_011021_p6 | hypothetical protein | phrog_553 | minor tail protein | tail | 1 | 3279 | 3989 |
| YP_001994716.1 | NC_011021_p75 | hypothetical protein | singleton | unknown function | unknown function | -1 | 46637 | 46810 |
| YP_001994667.1 | NC_011021_p26 | hypothetical protein | phrog_1543 | minor tail protein | tail | 1 | 20871 | 21053 |
| YP_001994649.1 | NC_011021_p8 | hypothetical protein | phrog_747 | unknown function | unknown function | 1 | 4271 | 4528 |
| YP_001994644.1 | NC_011021_p3 | hypothetical protein | phrog_226 | minor tail protein | tail | 1 | 1070 | 1504 |
| YP_001994664.1 | NC_011021_p23 | tail scaffold protein | phrog_330 | tail assembly chaperone | tail | 1 | 15381 | 15857 |
| YP_001994687.1 | NC_011021_p46 | hypothetical protein | phrog_364 | ribonucleoside reductase class II | DNA, RNA and nucleotide metabolism | -1 | 34793 | 35284 |
| YP_001994731.1 | NC_011021_p90 | hypothetical protein | phrog_23375 | unknown function | unknown function | -1 | 50686 | 50925 |
| YP_001994729.1 | NC_011021_p88 | hypothetical protein | phrog_4958 | unknown function | unknown function | -1 | 49865 | 50149 |
| YP_001994709.1 | NC_011021_p68 | RecB | phrog_69 | exonuclease | DNA, RNA and nucleotide metabolism | -1 | 43428 | 44246 |
| YP_001994678.1 | NC_011021_p37 | hypothetical protein | phrog_411 | unknown function | unknown function | 1 | 28994 | 29278 |
| YP_001994663.1 | NC_011021_p22 | tail scaffold protein | phrog_393 | tail assembly chaperone | tail | 1 | 15381 | 16279 |
| YP_001994704.1 | NC_011021_p63 | hypothetical protein | phrog_2507 | unknown function | unknown function | -1 | 42158 | 42331 |
| YP_001994724.1 | NC_011021_p83 | hypothetical protein | phrog_2093 | unknown function | unknown function | -1 | 48183 | 48311 |
| YP_001994672.1 | NC_011021_p31 | hypothetical protein | phrog_346 | minor tail protein | tail | 1 | 24050 | 25903 |
| YP_001994661.1 | NC_011021_p20 | hypothetical protein | phrog_123 | tail terminator | connector | 1 | 14053 | 14499 |
| YP_001994668.1 | NC_011021_p27 | minor tail protein | phrog_110 | minor tail protein | tail | 1 | 21053 | 22855 |
| YP_001994730.1 | NC_011021_p89 | hypothetical protein | phrog_5419 | unknown function | unknown function | -1 | 50357 | 50614 |