Genomic map of Mycobacterium phage DD5 (NC_011022)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_011022
Definition
Mycobacterium phage DD5, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Fromanvirus; unclassified Fromanvirus.
DB of origin
REFSEQ
Length
51621
Host Name
Mycobacterium
Host domain
Bacteria
Is prophage?
undef
Number of proteins
87
%GC
63.38
Number of singletons
1
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_001994741.1 NC_011022_p10 lysin A phrog_317 endolysin lysis 1 5332 6726
YP_001994809.1 NC_011022_p78 hypothetical protein phrog_1155 unknown function unknown function -1 47864 48016
YP_001994780.1 NC_011022_p49 hypothetical protein phrog_5618 unknown function unknown function -1 37076 37285
YP_001994789.1 NC_011022_p58 endo VII phrog_307 endonuclease VII DNA, RNA and nucleotide metabolism -1 40257 40745
YP_001994798.1 NC_011022_p67 hypothetical protein phrog_2184 unknown function unknown function -1 43575 43895
YP_001994792.1 NC_011022_p61 helicase/DnaB phrog_243 DnaB-like replicative helicase DNA, RNA and nucleotide metabolism -1 41799 42620
YP_001994755.1 NC_011022_p24 tail scaffold protein phrog_330 tail assembly chaperone tail 1 16148 16624
YP_001994794.1 NC_011022_p63 hypothetical protein phrog_2864 unknown function unknown function -1 42829 42996
YP_001994737.1 NC_011022_p6 hypothetical protein phrog_553 minor tail protein tail 1 3502 4212
YP_001994760.1 NC_011022_p29 hypothetical protein phrog_352 minor tail protein tail 1 23658 24104
YP_001994753.1 NC_011022_p22 major tail protein phrog_117 major tail protein tail 1 15275 16126
YP_001994733.1 NC_011022_p2 WhiB/HNH endo phrog_333 HNH endonuclease DNA, RNA and nucleotide metabolism 1 739 1035
YP_001994817.1 NC_011022_p86 hypothetical protein phrog_5419 unknown function unknown function -1 50602 50934
YP_001994810.1 NC_011022_p79 hypothetical protein phrog_10460 unknown function unknown function -1 48016 48261
YP_001994751.1 NC_011022_p20 hypothetical protein phrog_321 tail completion or Neck1 protein connector 1 14421 14816
YP_001994793.1 NC_011022_p62 hypothetical protein phrog_5323 unknown function unknown function -1 42623 42832
YP_001994759.1 NC_011022_p28 minor tail protein phrog_110 minor tail protein tail 1 21820 23622
YP_001994774.1 NC_011022_p43 hypothetical protein phrog_383 unknown function unknown function -1 33004 33360
YP_001994764.1 NC_011022_p33 tail protein phrog_382 minor tail protein with lysin activity tail 1 26663 28141
YP_001994802.1 NC_011022_p71 hypothetical protein phrog_1584 unknown function unknown function -1 45293 45616
YP_001994781.1 NC_011022_p50 hypothetical protein phrog_1782 site-specific recombination directionality factor RDF integration and excision -1 37282 37419
YP_001994808.1 NC_011022_p77 hypothetical protein phrog_3472 unknown function unknown function -1 47586 47867
YP_001994747.1 NC_011022_p16 major capsid phrog_10 major head protein head and packaging 1 12290 13288
YP_001994786.1 NC_011022_p55 DNA primase phrog_360 DNA primase DNA, RNA and nucleotide metabolism -1 39342 39884
YP_001994743.1 NC_011022_p12 terminase large subunit phrog_9 terminase large subunit head and packaging 1 7704 9392
YP_001994745.1 NC_011022_p14 capsid maturation protease phrog_193 head maturation protease head and packaging 1 10828 11709
YP_001994761.1 NC_011022_p30 hypothetical protein phrog_981 minor tail protein tail 1 24101 24448
YP_001994772.1 NC_011022_p41 hypothetical protein phrog_1860 unknown function unknown function -1 32628 32774
YP_001994763.1 NC_011022_p32 hypothetical protein phrog_346 minor tail protein tail 1 24817 26670
YP_001994732.1 NC_011022_p1 hypothetical protein phrog_21009 unknown function unknown function 1 603 758
YP_001994742.1 NC_011022_p11 lysin B phrog_102 endolysin lysis 1 6716 7684
YP_001994767.1 NC_011022_p36 hypothetical protein phrog_754 minor tail protein tail 1 28752 29711
YP_001994801.1 NC_011022_p70 hypothetical protein phrog_13709 unknown function unknown function -1 45081 45296
YP_001994769.2 NC_011022_p38 serine integrase phrog_95 integrase integration and excision 1 30268 31770
YP_001994770.1 NC_011022_p39 hypothetical protein phrog_12181 unknown function unknown function -1 31892 32461
YP_001994750.1 NC_011022_p19 hypothetical protein phrog_320 head closure Hc1 connector 1 14059 14421
YP_001994800.1 NC_011022_p69 RecB phrog_69 exonuclease DNA, RNA and nucleotide metabolism -1 44266 45084
YP_001994746.1 NC_011022_p15 scaffolding phrog_233 head scaffolding protein head and packaging 1 11768 12280
YP_001994752.1 NC_011022_p21 hypothetical protein phrog_123 tail terminator connector 1 14820 15266
YP_001994815.1 NC_011022_p84 DNA methylase phrog_363 DNA methyltransferase other -1 49434 50105
YP_001994749.1 NC_011022_p18 hypothetical protein phrog_137 head-tail adaptor Ad1 connector 1 13610 14059
YP_001994811.1 NC_011022_p80 hypothetical protein phrog_861 site-specific recombination directionality factor RDF integration and excision -1 48264 48431
YP_001994766.1 NC_011022_p35 hypothetical protein phrog_1560 unknown function unknown function 1 28564 28755
YP_001994777.1 NC_011022_p46 hypothetical protein phrog_364 ribonucleoside reductase class II DNA, RNA and nucleotide metabolism -1 35631 36122
YP_001994784.1 NC_011022_p53 hypothetical protein phrog_1167 phosphofructokinase other -1 38370 39005
YP_001994796.1 NC_011022_p65 hypothetical protein phrog_1705 unknown function unknown function -1 43166 43288
YP_001994738.1 NC_011022_p7 hypothetical protein phrog_1718 tail protein tail 1 4226 4486
YP_001994744.1 NC_011022_p13 portal phrog_104 portal protein head and packaging 1 9389 10831
YP_001994740.1 NC_011022_p9 HNH endonuclease phrog_1492 HNH endonuclease DNA, RNA and nucleotide metabolism 1 4751 5332
YP_001994735.1 NC_011022_p4 hypothetical protein phrog_2830 unknown function unknown function 1 1675 1905
YP_001994799.1 NC_011022_p68 hypothetical protein phrog_1763 HTH DNA binding protein DNA, RNA and nucleotide metabolism -1 43899 44204
YP_001994773.1 NC_011022_p42 hypothetical protein phrog_1971 unknown function unknown function -1 32720 33007
YP_001994762.1 NC_011022_p31 hypothetical protein phrog_1397 unknown function unknown function 1 24355 24792
YP_001994785.1 NC_011022_p54 DNA topoisomerase-primase phrog_47 DNA primase DNA, RNA and nucleotide metabolism -1 39002 39472
YP_001994813.1 NC_011022_p82 hypothetical protein singleton unknown function unknown function -1 48553 48825
YP_001994736.1 NC_011022_p5 hypothetical protein phrog_1197 tail protein tail 1 2422 3492
YP_001994778.1 NC_011022_p47 hypothetical protein phrog_499 unknown function unknown function -1 36119 36301
YP_001994779.1 NC_011022_p48 hypothetical protein phrog_354 sigma-K factor transcription regulation -1 36298 37089
YP_001994771.1 NC_011022_p40 hypothetical protein phrog_2035 unknown function unknown function -1 32461 32631
YP_001994776.1 NC_011022_p45 hypothetical protein phrog_1781 unknown function unknown function -1 35370 35570
YP_001994734.1 NC_011022_p3 tail fiber-like protein phrog_226 minor tail protein tail 1 1070 1504
YP_001994782.1 NC_011022_p51 recombination directionality factor phrog_221 metallo-phosphoesterase other -1 37424 38191
YP_001994775.1 NC_011022_p44 DNA polymerase phrog_17 DNA polymerase DNA, RNA and nucleotide metabolism -1 33381 35207
YP_001994757.1 NC_011022_p26 minor tail protein phrog_106 minor tail protein tail 1 19562 21619
YP_001994758.1 NC_011022_p27 hypothetical protein phrog_1543 minor tail protein tail 1 21638 21820
YP_001994791.1 NC_011022_p60 glutaredoxin phrog_22 thioredoxin domain DNA, RNA and nucleotide metabolism -1 41418 41693
YP_001994797.1 NC_011022_p66 hypothetical protein phrog_520 unknown function unknown function -1 43285 43578
YP_001994765.1 NC_011022_p34 hypothetical protein phrog_644 unknown function unknown function 1 28231 28554
YP_001994806.1 NC_011022_p75 hypothetical protein phrog_1720 unknown function unknown function -1 47120 47389
YP_001994788.1 NC_011022_p57 hypothetical protein phrog_397 unknown function unknown function -1 40095 40238
YP_001994812.1 NC_011022_p81 hypothetical protein phrog_2093 unknown function unknown function -1 48428 48556
YP_001994804.2 NC_011022_p73 immunity repressor phrog_357 transcriptional repressor transcription regulation -1 46050 46562
YP_001994748.1 NC_011022_p17 hypothetical protein phrog_1857 head-tail connector protein connector 1 13374 13610
YP_001994814.1 NC_011022_p83 hypothetical protein phrog_932 unknown function unknown function -1 48981 49160
YP_001994787.1 NC_011022_p56 hypothetical protein phrog_1783 unknown function unknown function -1 39863 40027
YP_001994807.1 NC_011022_p76 hypothetical protein phrog_1387 unknown function unknown function -1 47386 47589
YP_001994783.1 NC_011022_p52 hypothetical protein phrog_1503 unknown function unknown function -1 38188 38373
YP_001994816.1 NC_011022_p85 hypothetical protein phrog_4958 unknown function unknown function -1 50110 50394
YP_001994754.1 NC_011022_p23 tail scaffold protein phrog_393 tail assembly chaperone tail 1 16148 17046
YP_001994795.1 NC_011022_p64 hypothetical protein phrog_2507 unknown function unknown function -1 42996 43169
YP_001994818.1 NC_011022_p87 hypothetical protein phrog_23375 unknown function unknown function -1 50931 51170
YP_001994768.1 NC_011022_p37 hypothetical protein phrog_411 unknown function unknown function 1 29832 30116
YP_001994790.1 NC_011022_p59 hypothetical protein phrog_4334 unknown function unknown function -1 40880 41326
YP_001994756.1 NC_011022_p25 tapemeasure protein phrog_305 tail length tape measure protein tail 1 17058 19538
YP_001994739.1 NC_011022_p8 hypothetical protein phrog_747 unknown function unknown function 1 4494 4751
YP_001994805.1 NC_011022_p74 hypothetical protein phrog_439 site-specific recombination directionality factor RDF integration and excision -1 46824 47123
YP_001994803.1 NC_011022_p72 hypothetical protein phrog_1809 unknown function unknown function -1 45613 46008