| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_011022 |
Definition |
Mycobacterium phage DD5, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Fromanvirus; unclassified Fromanvirus. |
DB of origin |
REFSEQ |
Length |
51621 |
Host Name |
Mycobacterium |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
87 |
%GC |
63.38 |
Number of singletons |
1 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_001994741.1 | NC_011022_p10 | lysin A | phrog_317 | endolysin | lysis | 1 | 5332 | 6726 |
| YP_001994809.1 | NC_011022_p78 | hypothetical protein | phrog_1155 | unknown function | unknown function | -1 | 47864 | 48016 |
| YP_001994780.1 | NC_011022_p49 | hypothetical protein | phrog_5618 | unknown function | unknown function | -1 | 37076 | 37285 |
| YP_001994789.1 | NC_011022_p58 | endo VII | phrog_307 | endonuclease VII | DNA, RNA and nucleotide metabolism | -1 | 40257 | 40745 |
| YP_001994798.1 | NC_011022_p67 | hypothetical protein | phrog_2184 | unknown function | unknown function | -1 | 43575 | 43895 |
| YP_001994792.1 | NC_011022_p61 | helicase/DnaB | phrog_243 | DnaB-like replicative helicase | DNA, RNA and nucleotide metabolism | -1 | 41799 | 42620 |
| YP_001994755.1 | NC_011022_p24 | tail scaffold protein | phrog_330 | tail assembly chaperone | tail | 1 | 16148 | 16624 |
| YP_001994794.1 | NC_011022_p63 | hypothetical protein | phrog_2864 | unknown function | unknown function | -1 | 42829 | 42996 |
| YP_001994737.1 | NC_011022_p6 | hypothetical protein | phrog_553 | minor tail protein | tail | 1 | 3502 | 4212 |
| YP_001994760.1 | NC_011022_p29 | hypothetical protein | phrog_352 | minor tail protein | tail | 1 | 23658 | 24104 |
| YP_001994753.1 | NC_011022_p22 | major tail protein | phrog_117 | major tail protein | tail | 1 | 15275 | 16126 |
| YP_001994733.1 | NC_011022_p2 | WhiB/HNH endo | phrog_333 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 739 | 1035 |
| YP_001994817.1 | NC_011022_p86 | hypothetical protein | phrog_5419 | unknown function | unknown function | -1 | 50602 | 50934 |
| YP_001994810.1 | NC_011022_p79 | hypothetical protein | phrog_10460 | unknown function | unknown function | -1 | 48016 | 48261 |
| YP_001994751.1 | NC_011022_p20 | hypothetical protein | phrog_321 | tail completion or Neck1 protein | connector | 1 | 14421 | 14816 |
| YP_001994793.1 | NC_011022_p62 | hypothetical protein | phrog_5323 | unknown function | unknown function | -1 | 42623 | 42832 |
| YP_001994759.1 | NC_011022_p28 | minor tail protein | phrog_110 | minor tail protein | tail | 1 | 21820 | 23622 |
| YP_001994774.1 | NC_011022_p43 | hypothetical protein | phrog_383 | unknown function | unknown function | -1 | 33004 | 33360 |
| YP_001994764.1 | NC_011022_p33 | tail protein | phrog_382 | minor tail protein with lysin activity | tail | 1 | 26663 | 28141 |
| YP_001994802.1 | NC_011022_p71 | hypothetical protein | phrog_1584 | unknown function | unknown function | -1 | 45293 | 45616 |
| YP_001994781.1 | NC_011022_p50 | hypothetical protein | phrog_1782 | site-specific recombination directionality factor RDF | integration and excision | -1 | 37282 | 37419 |
| YP_001994808.1 | NC_011022_p77 | hypothetical protein | phrog_3472 | unknown function | unknown function | -1 | 47586 | 47867 |
| YP_001994747.1 | NC_011022_p16 | major capsid | phrog_10 | major head protein | head and packaging | 1 | 12290 | 13288 |
| YP_001994786.1 | NC_011022_p55 | DNA primase | phrog_360 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 39342 | 39884 |
| YP_001994743.1 | NC_011022_p12 | terminase large subunit | phrog_9 | terminase large subunit | head and packaging | 1 | 7704 | 9392 |
| YP_001994745.1 | NC_011022_p14 | capsid maturation protease | phrog_193 | head maturation protease | head and packaging | 1 | 10828 | 11709 |
| YP_001994761.1 | NC_011022_p30 | hypothetical protein | phrog_981 | minor tail protein | tail | 1 | 24101 | 24448 |
| YP_001994772.1 | NC_011022_p41 | hypothetical protein | phrog_1860 | unknown function | unknown function | -1 | 32628 | 32774 |
| YP_001994763.1 | NC_011022_p32 | hypothetical protein | phrog_346 | minor tail protein | tail | 1 | 24817 | 26670 |
| YP_001994732.1 | NC_011022_p1 | hypothetical protein | phrog_21009 | unknown function | unknown function | 1 | 603 | 758 |
| YP_001994742.1 | NC_011022_p11 | lysin B | phrog_102 | endolysin | lysis | 1 | 6716 | 7684 |
| YP_001994767.1 | NC_011022_p36 | hypothetical protein | phrog_754 | minor tail protein | tail | 1 | 28752 | 29711 |
| YP_001994801.1 | NC_011022_p70 | hypothetical protein | phrog_13709 | unknown function | unknown function | -1 | 45081 | 45296 |
| YP_001994769.2 | NC_011022_p38 | serine integrase | phrog_95 | integrase | integration and excision | 1 | 30268 | 31770 |
| YP_001994770.1 | NC_011022_p39 | hypothetical protein | phrog_12181 | unknown function | unknown function | -1 | 31892 | 32461 |
| YP_001994750.1 | NC_011022_p19 | hypothetical protein | phrog_320 | head closure Hc1 | connector | 1 | 14059 | 14421 |
| YP_001994800.1 | NC_011022_p69 | RecB | phrog_69 | exonuclease | DNA, RNA and nucleotide metabolism | -1 | 44266 | 45084 |
| YP_001994746.1 | NC_011022_p15 | scaffolding | phrog_233 | head scaffolding protein | head and packaging | 1 | 11768 | 12280 |
| YP_001994752.1 | NC_011022_p21 | hypothetical protein | phrog_123 | tail terminator | connector | 1 | 14820 | 15266 |
| YP_001994815.1 | NC_011022_p84 | DNA methylase | phrog_363 | DNA methyltransferase | other | -1 | 49434 | 50105 |
| YP_001994749.1 | NC_011022_p18 | hypothetical protein | phrog_137 | head-tail adaptor Ad1 | connector | 1 | 13610 | 14059 |
| YP_001994811.1 | NC_011022_p80 | hypothetical protein | phrog_861 | site-specific recombination directionality factor RDF | integration and excision | -1 | 48264 | 48431 |
| YP_001994766.1 | NC_011022_p35 | hypothetical protein | phrog_1560 | unknown function | unknown function | 1 | 28564 | 28755 |
| YP_001994777.1 | NC_011022_p46 | hypothetical protein | phrog_364 | ribonucleoside reductase class II | DNA, RNA and nucleotide metabolism | -1 | 35631 | 36122 |
| YP_001994784.1 | NC_011022_p53 | hypothetical protein | phrog_1167 | phosphofructokinase | other | -1 | 38370 | 39005 |
| YP_001994796.1 | NC_011022_p65 | hypothetical protein | phrog_1705 | unknown function | unknown function | -1 | 43166 | 43288 |
| YP_001994738.1 | NC_011022_p7 | hypothetical protein | phrog_1718 | tail protein | tail | 1 | 4226 | 4486 |
| YP_001994744.1 | NC_011022_p13 | portal | phrog_104 | portal protein | head and packaging | 1 | 9389 | 10831 |
| YP_001994740.1 | NC_011022_p9 | HNH endonuclease | phrog_1492 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 4751 | 5332 |
| YP_001994735.1 | NC_011022_p4 | hypothetical protein | phrog_2830 | unknown function | unknown function | 1 | 1675 | 1905 |
| YP_001994799.1 | NC_011022_p68 | hypothetical protein | phrog_1763 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 43899 | 44204 |
| YP_001994773.1 | NC_011022_p42 | hypothetical protein | phrog_1971 | unknown function | unknown function | -1 | 32720 | 33007 |
| YP_001994762.1 | NC_011022_p31 | hypothetical protein | phrog_1397 | unknown function | unknown function | 1 | 24355 | 24792 |
| YP_001994785.1 | NC_011022_p54 | DNA topoisomerase-primase | phrog_47 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 39002 | 39472 |
| YP_001994813.1 | NC_011022_p82 | hypothetical protein | singleton | unknown function | unknown function | -1 | 48553 | 48825 |
| YP_001994736.1 | NC_011022_p5 | hypothetical protein | phrog_1197 | tail protein | tail | 1 | 2422 | 3492 |
| YP_001994778.1 | NC_011022_p47 | hypothetical protein | phrog_499 | unknown function | unknown function | -1 | 36119 | 36301 |
| YP_001994779.1 | NC_011022_p48 | hypothetical protein | phrog_354 | sigma-K factor | transcription regulation | -1 | 36298 | 37089 |
| YP_001994771.1 | NC_011022_p40 | hypothetical protein | phrog_2035 | unknown function | unknown function | -1 | 32461 | 32631 |
| YP_001994776.1 | NC_011022_p45 | hypothetical protein | phrog_1781 | unknown function | unknown function | -1 | 35370 | 35570 |
| YP_001994734.1 | NC_011022_p3 | tail fiber-like protein | phrog_226 | minor tail protein | tail | 1 | 1070 | 1504 |
| YP_001994782.1 | NC_011022_p51 | recombination directionality factor | phrog_221 | metallo-phosphoesterase | other | -1 | 37424 | 38191 |
| YP_001994775.1 | NC_011022_p44 | DNA polymerase | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | -1 | 33381 | 35207 |
| YP_001994757.1 | NC_011022_p26 | minor tail protein | phrog_106 | minor tail protein | tail | 1 | 19562 | 21619 |
| YP_001994758.1 | NC_011022_p27 | hypothetical protein | phrog_1543 | minor tail protein | tail | 1 | 21638 | 21820 |
| YP_001994791.1 | NC_011022_p60 | glutaredoxin | phrog_22 | thioredoxin domain | DNA, RNA and nucleotide metabolism | -1 | 41418 | 41693 |
| YP_001994797.1 | NC_011022_p66 | hypothetical protein | phrog_520 | unknown function | unknown function | -1 | 43285 | 43578 |
| YP_001994765.1 | NC_011022_p34 | hypothetical protein | phrog_644 | unknown function | unknown function | 1 | 28231 | 28554 |
| YP_001994806.1 | NC_011022_p75 | hypothetical protein | phrog_1720 | unknown function | unknown function | -1 | 47120 | 47389 |
| YP_001994788.1 | NC_011022_p57 | hypothetical protein | phrog_397 | unknown function | unknown function | -1 | 40095 | 40238 |
| YP_001994812.1 | NC_011022_p81 | hypothetical protein | phrog_2093 | unknown function | unknown function | -1 | 48428 | 48556 |
| YP_001994804.2 | NC_011022_p73 | immunity repressor | phrog_357 | transcriptional repressor | transcription regulation | -1 | 46050 | 46562 |
| YP_001994748.1 | NC_011022_p17 | hypothetical protein | phrog_1857 | head-tail connector protein | connector | 1 | 13374 | 13610 |
| YP_001994814.1 | NC_011022_p83 | hypothetical protein | phrog_932 | unknown function | unknown function | -1 | 48981 | 49160 |
| YP_001994787.1 | NC_011022_p56 | hypothetical protein | phrog_1783 | unknown function | unknown function | -1 | 39863 | 40027 |
| YP_001994807.1 | NC_011022_p76 | hypothetical protein | phrog_1387 | unknown function | unknown function | -1 | 47386 | 47589 |
| YP_001994783.1 | NC_011022_p52 | hypothetical protein | phrog_1503 | unknown function | unknown function | -1 | 38188 | 38373 |
| YP_001994816.1 | NC_011022_p85 | hypothetical protein | phrog_4958 | unknown function | unknown function | -1 | 50110 | 50394 |
| YP_001994754.1 | NC_011022_p23 | tail scaffold protein | phrog_393 | tail assembly chaperone | tail | 1 | 16148 | 17046 |
| YP_001994795.1 | NC_011022_p64 | hypothetical protein | phrog_2507 | unknown function | unknown function | -1 | 42996 | 43169 |
| YP_001994818.1 | NC_011022_p87 | hypothetical protein | phrog_23375 | unknown function | unknown function | -1 | 50931 | 51170 |
| YP_001994768.1 | NC_011022_p37 | hypothetical protein | phrog_411 | unknown function | unknown function | 1 | 29832 | 30116 |
| YP_001994790.1 | NC_011022_p59 | hypothetical protein | phrog_4334 | unknown function | unknown function | -1 | 40880 | 41326 |
| YP_001994756.1 | NC_011022_p25 | tapemeasure protein | phrog_305 | tail length tape measure protein | tail | 1 | 17058 | 19538 |
| YP_001994739.1 | NC_011022_p8 | hypothetical protein | phrog_747 | unknown function | unknown function | 1 | 4494 | 4751 |
| YP_001994805.1 | NC_011022_p74 | hypothetical protein | phrog_439 | site-specific recombination directionality factor RDF | integration and excision | -1 | 46824 | 47123 |
| YP_001994803.1 | NC_011022_p72 | hypothetical protein | phrog_1809 | unknown function | unknown function | -1 | 45613 | 46008 |