Genomic map of Yersinia phage Yepe2 (NC_011038)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_011038
Definition
Yersinia phage Yepe2, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Autographiviridae; Studiervirinae; Berlinvirus; Yersinia virus Yepe2.
DB of origin
REFSEQ
Length
38677
Host Name
Yersinia pestis
Host domain
Bacteria
Is prophage?
undef
Number of proteins
46
%GC
47.26
Number of singletons
1
Number of paralogs
1

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_002003354.1 NC_011038_p42 phage lambda Rz-like lysis protein phrog_1327 Rz-like spanin lysis 1 34344 34793
YP_002003322.1 NC_011038_p10 hypothetical protein phrog_1312 unknown function unknown function 1 7652 7750
YP_002003323.1 NC_011038_p11 inhibitor of host bacterial RNA polymerase phrog_1307 RNA polymerase inhibitor DNA, RNA and nucleotide metabolism 1 7747 7938
YP_002003318.1 NC_011038_p6 ATP-dependent DNA ligase phrog_114 ATP-dependent DNA ligase DNA, RNA and nucleotide metabolism 1 5868 6896
YP_002003317.1 NC_011038_p5 host dGTPase inhibitor phrog_2949 dGTPase inhibitor; target for F exclusion other 1 5484 5741
YP_002003321.1 NC_011038_p9 gp1.7 phrog_2585 nucleotide kinase other 1 7345 7659
YP_002003326.1 NC_011038_p14 lysozyme phrog_822 amidase lysis 1 9182 9637
YP_002003338.1 NC_011038_p26 hypothetical protein phrog_1447 unknown function unknown function 1 16737 16982
YP_002003353.1 NC_011038_p41 DNA packaging protein, small subunit phrog_1351 terminase small subunit head and packaging 1 33976 34245
YP_002003346.1 NC_011038_p34 hypothetical protein phrog_457 tail protein tail 1 22180 24558
YP_002003339.1 NC_011038_p27 hypothetical protein phrog_1391 unknown function unknown function 1 17000 17284
YP_002003319.1 NC_011038_p7 gp1.5 phrog_10145 unknown function unknown function 1 6974 7051
YP_002003340.1 NC_011038_p28 tail assembly protein phrog_1320 host range and adsorption protein moron, auxiliary metabolic gene and host takeover 1 17299 17571
YP_002003313.1 NC_011038_p1 ABC transporter phrog_27091 unknown function unknown function 1 1061 1297
YP_002003345.1 NC_011038_p33 tail tubular protein A phrog_446 tail protein tail 1 21563 22153
YP_002003350.1 NC_011038_p38 internal virion protein D phrog_342 internal virion protein with endolysin domain head and packaging 1 27982 31929
YP_002003325.1 NC_011038_p13 endonuclease I phrog_945 endonuclease DNA, RNA and nucleotide metabolism 1 8733 9185
YP_002003341.1 NC_011038_p29 hypothetical protein phrog_449 head-tail adaptor connector 1 17586 19193
YP_002003314.1 NC_011038_p2 protein kinase phrog_2828 serine-threonine kinase other 1 1344 2483
YP_002003357.1 NC_011038_p45 hypothetical protein phrog_38 terminase large subunit head and packaging 1 35407 37164
YP_002003329.1 NC_011038_p17 4B phrog_239 DNA primase/helicase DNA, RNA and nucleotide metabolism 1 10007 11518
YP_002003352.1 NC_011038_p40 type II holin phrog_920 holin lysis 1 33777 33983
YP_002003324.1 NC_011038_p12 single-stranded DNA-binding protein phrog_112 Gp2.5-like ssDNA binding protein and ssDNA annealing protein DNA, RNA and nucleotide metabolism 1 8006 8713
YP_002003332.1 NC_011038_p20 hypothetical protein phrog_2254 unknown function unknown function 1 11819 12115
YP_002003358.1 NC_011038_p46 gp7.7 homolog phrog_6254 HNH endonuclease DNA, RNA and nucleotide metabolism 1 37204 37650
YP_002003351.1 NC_011038_p39 tail fiber protein phrog_4242 tail fiber protein tail 1 32015 33724
YP_002003344.1 NC_011038_p32 gp10B singleton unknown function unknown function 1 21325 21462
YP_002003327.1 NC_011038_p15 unknown product phrog_32729 unknown function unknown function 1 9712 9795
YP_002003347.1 NC_011038_p35 internal virion protein A phrog_308 internal virion protein head and packaging 1 24642 25052
YP_002003337.1 NC_011038_p25 exonuclease phrog_107 exonuclease DNA, RNA and nucleotide metabolism 1 15690 16604
YP_002003335.1 NC_011038_p23 hypothetical protein phrog_1334 unknown function unknown function 1 15308 15517
YP_002003348.1 NC_011038_p36 internal virion protein B phrog_805 internal virion protein head and packaging 1 25056 25643
YP_002003316.1 NC_011038_p4 hypothetical protein phrog_2490 unknown function unknown function 1 5335 5484
YP_002003349.1 NC_011038_p37 internal virion protein C phrog_1339 internal virion protein head and packaging 1 25679 27958
YP_002003328.1 NC_011038_p16 gp4A phrog_239 DNA primase/helicase DNA, RNA and nucleotide metabolism 1 9806 11518
YP_002003336.1 NC_011038_p24 host recBCD nuclease inhibitor phrog_4790 host RecBCD nuclease inhibitor moron, auxiliary metabolic gene and host takeover 1 15514 15693
YP_002003355.1 NC_011038_p43 phage lambda Rz1-like protein phrog_4306 Rz-like spanin lysis 1 34459 34713
YP_002003320.1 NC_011038_p8 hypothetical protein phrog_1777 unknown function unknown function 1 7082 7345
YP_002003333.1 NC_011038_p21 hypothetical protein phrog_17 DNA polymerase DNA, RNA and nucleotide metabolism 1 12210 15004
YP_002003356.1 NC_011038_p44 unknown product phrog_27102 unknown function unknown function 1 34786 35391
YP_002003342.1 NC_011038_p30 capsid assembly protein phrog_1052 head assembly head and packaging 1 19267 20181
YP_002003343.1 NC_011038_p31 major capsid protein phrog_267 major head protein head and packaging 1 20312 21373
YP_002003330.1 NC_011038_p18 hypothetical protein phrog_5140 unknown function unknown function 1 11238 11600
YP_002003334.1 NC_011038_p22 gp5.5 phrog_1452 Gp5.5-like host HNS inhibition moron, auxiliary metabolic gene and host takeover 1 15024 15308
YP_002003331.1 NC_011038_p19 hypothetical protein phrog_1950 unknown function unknown function 1 11593 11805
YP_002003315.1 NC_011038_p3 T3/T7-like RNA polymerase phrog_414 RNA polymerase DNA, RNA and nucleotide metabolism 1 2557 5208