| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_011038 |
Definition |
Yersinia phage Yepe2, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Autographiviridae; Studiervirinae; Berlinvirus; Yersinia virus Yepe2. |
DB of origin |
REFSEQ |
Length |
38677 |
Host Name |
Yersinia pestis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
46 |
%GC |
47.26 |
Number of singletons |
1 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_002003354.1 | NC_011038_p42 | phage lambda Rz-like lysis protein | phrog_1327 | Rz-like spanin | lysis | 1 | 34344 | 34793 |
| YP_002003322.1 | NC_011038_p10 | hypothetical protein | phrog_1312 | unknown function | unknown function | 1 | 7652 | 7750 |
| YP_002003323.1 | NC_011038_p11 | inhibitor of host bacterial RNA polymerase | phrog_1307 | RNA polymerase inhibitor | DNA, RNA and nucleotide metabolism | 1 | 7747 | 7938 |
| YP_002003318.1 | NC_011038_p6 | ATP-dependent DNA ligase | phrog_114 | ATP-dependent DNA ligase | DNA, RNA and nucleotide metabolism | 1 | 5868 | 6896 |
| YP_002003317.1 | NC_011038_p5 | host dGTPase inhibitor | phrog_2949 | dGTPase inhibitor; target for F exclusion | other | 1 | 5484 | 5741 |
| YP_002003321.1 | NC_011038_p9 | gp1.7 | phrog_2585 | nucleotide kinase | other | 1 | 7345 | 7659 |
| YP_002003326.1 | NC_011038_p14 | lysozyme | phrog_822 | amidase | lysis | 1 | 9182 | 9637 |
| YP_002003338.1 | NC_011038_p26 | hypothetical protein | phrog_1447 | unknown function | unknown function | 1 | 16737 | 16982 |
| YP_002003353.1 | NC_011038_p41 | DNA packaging protein, small subunit | phrog_1351 | terminase small subunit | head and packaging | 1 | 33976 | 34245 |
| YP_002003346.1 | NC_011038_p34 | hypothetical protein | phrog_457 | tail protein | tail | 1 | 22180 | 24558 |
| YP_002003339.1 | NC_011038_p27 | hypothetical protein | phrog_1391 | unknown function | unknown function | 1 | 17000 | 17284 |
| YP_002003319.1 | NC_011038_p7 | gp1.5 | phrog_10145 | unknown function | unknown function | 1 | 6974 | 7051 |
| YP_002003340.1 | NC_011038_p28 | tail assembly protein | phrog_1320 | host range and adsorption protein | moron, auxiliary metabolic gene and host takeover | 1 | 17299 | 17571 |
| YP_002003313.1 | NC_011038_p1 | ABC transporter | phrog_27091 | unknown function | unknown function | 1 | 1061 | 1297 |
| YP_002003345.1 | NC_011038_p33 | tail tubular protein A | phrog_446 | tail protein | tail | 1 | 21563 | 22153 |
| YP_002003350.1 | NC_011038_p38 | internal virion protein D | phrog_342 | internal virion protein with endolysin domain | head and packaging | 1 | 27982 | 31929 |
| YP_002003325.1 | NC_011038_p13 | endonuclease I | phrog_945 | endonuclease | DNA, RNA and nucleotide metabolism | 1 | 8733 | 9185 |
| YP_002003341.1 | NC_011038_p29 | hypothetical protein | phrog_449 | head-tail adaptor | connector | 1 | 17586 | 19193 |
| YP_002003314.1 | NC_011038_p2 | protein kinase | phrog_2828 | serine-threonine kinase | other | 1 | 1344 | 2483 |
| YP_002003357.1 | NC_011038_p45 | hypothetical protein | phrog_38 | terminase large subunit | head and packaging | 1 | 35407 | 37164 |
| YP_002003329.1 | NC_011038_p17 | 4B | phrog_239 | DNA primase/helicase | DNA, RNA and nucleotide metabolism | 1 | 10007 | 11518 |
| YP_002003352.1 | NC_011038_p40 | type II holin | phrog_920 | holin | lysis | 1 | 33777 | 33983 |
| YP_002003324.1 | NC_011038_p12 | single-stranded DNA-binding protein | phrog_112 | Gp2.5-like ssDNA binding protein and ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 8006 | 8713 |
| YP_002003332.1 | NC_011038_p20 | hypothetical protein | phrog_2254 | unknown function | unknown function | 1 | 11819 | 12115 |
| YP_002003358.1 | NC_011038_p46 | gp7.7 homolog | phrog_6254 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 37204 | 37650 |
| YP_002003351.1 | NC_011038_p39 | tail fiber protein | phrog_4242 | tail fiber protein | tail | 1 | 32015 | 33724 |
| YP_002003344.1 | NC_011038_p32 | gp10B | singleton | unknown function | unknown function | 1 | 21325 | 21462 |
| YP_002003327.1 | NC_011038_p15 | unknown product | phrog_32729 | unknown function | unknown function | 1 | 9712 | 9795 |
| YP_002003347.1 | NC_011038_p35 | internal virion protein A | phrog_308 | internal virion protein | head and packaging | 1 | 24642 | 25052 |
| YP_002003337.1 | NC_011038_p25 | exonuclease | phrog_107 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 15690 | 16604 |
| YP_002003335.1 | NC_011038_p23 | hypothetical protein | phrog_1334 | unknown function | unknown function | 1 | 15308 | 15517 |
| YP_002003348.1 | NC_011038_p36 | internal virion protein B | phrog_805 | internal virion protein | head and packaging | 1 | 25056 | 25643 |
| YP_002003316.1 | NC_011038_p4 | hypothetical protein | phrog_2490 | unknown function | unknown function | 1 | 5335 | 5484 |
| YP_002003349.1 | NC_011038_p37 | internal virion protein C | phrog_1339 | internal virion protein | head and packaging | 1 | 25679 | 27958 |
| YP_002003328.1 | NC_011038_p16 | gp4A | phrog_239 | DNA primase/helicase | DNA, RNA and nucleotide metabolism | 1 | 9806 | 11518 |
| YP_002003336.1 | NC_011038_p24 | host recBCD nuclease inhibitor | phrog_4790 | host RecBCD nuclease inhibitor | moron, auxiliary metabolic gene and host takeover | 1 | 15514 | 15693 |
| YP_002003355.1 | NC_011038_p43 | phage lambda Rz1-like protein | phrog_4306 | Rz-like spanin | lysis | 1 | 34459 | 34713 |
| YP_002003320.1 | NC_011038_p8 | hypothetical protein | phrog_1777 | unknown function | unknown function | 1 | 7082 | 7345 |
| YP_002003333.1 | NC_011038_p21 | hypothetical protein | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 12210 | 15004 |
| YP_002003356.1 | NC_011038_p44 | unknown product | phrog_27102 | unknown function | unknown function | 1 | 34786 | 35391 |
| YP_002003342.1 | NC_011038_p30 | capsid assembly protein | phrog_1052 | head assembly | head and packaging | 1 | 19267 | 20181 |
| YP_002003343.1 | NC_011038_p31 | major capsid protein | phrog_267 | major head protein | head and packaging | 1 | 20312 | 21373 |
| YP_002003330.1 | NC_011038_p18 | hypothetical protein | phrog_5140 | unknown function | unknown function | 1 | 11238 | 11600 |
| YP_002003334.1 | NC_011038_p22 | gp5.5 | phrog_1452 | Gp5.5-like host HNS inhibition | moron, auxiliary metabolic gene and host takeover | 1 | 15024 | 15308 |
| YP_002003331.1 | NC_011038_p19 | hypothetical protein | phrog_1950 | unknown function | unknown function | 1 | 11593 | 11805 |
| YP_002003315.1 | NC_011038_p3 | T3/T7-like RNA polymerase | phrog_414 | RNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 2557 | 5208 |