| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_011046 |
Definition |
Lactococcus phage bIBB29, complete genome. |
Molecule type |
DNA |
Genome structure |
circular |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Skunavirus. |
DB of origin |
REFSEQ |
Length |
29305 |
Host Name |
Lactococcus lactis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
54 |
%GC |
34.72 |
Number of singletons |
3 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_002004015.1 | NC_011046_p27 | hypothetical protein | singleton | unknown function | unknown function | -1 | 18814 | 19002 |
| YP_002004028.1 | NC_011046_p40 | hypothetical protein | phrog_1295 | unknown function | unknown function | -1 | 22702 | 22917 |
| YP_002004018.1 | NC_011046_p30 | hypothetical protein | phrog_1509 | unknown function | unknown function | -1 | 19436 | 19690 |
| YP_002004042.1 | NC_011046_p54 | hypothetical protein | phrog_1652 | unknown function | unknown function | 1 | 28422 | 28589 |
| YP_002004011.1 | NC_011046_p23 | hypothetical protein | phrog_5087 | unknown function | unknown function | -1 | 17434 | 17691 |
| YP_002003990.1 | NC_011046_p2 | phage terminase large subunit | phrog_9 | terminase large subunit | head and packaging | 1 | 784 | 2406 |
| YP_002004001.1 | NC_011046_p13 | hypothetical protein | phrog_1420 | virion structural protein | head and packaging | 1 | 8409 | 8684 |
| YP_002003996.1 | NC_011046_p8 | phage structural protein | phrog_1429 | virion structural protein | head and packaging | 1 | 5804 | 6118 |
| YP_002004034.1 | NC_011046_p46 | hypothetical protein | phrog_1405 | unknown function | unknown function | -1 | 24854 | 25117 |
| YP_002004010.1 | NC_011046_p22 | lytic transglycosylase | phrog_3874 | transglycosylase | other | -1 | 16808 | 17392 |
| YP_002003992.1 | NC_011046_p4 | phage portal protein | phrog_12 | portal protein | head and packaging | 1 | 2693 | 3829 |
| YP_002004013.1 | NC_011046_p25 | hypothetical protein | phrog_1430 | unknown function | unknown function | -1 | 17989 | 18261 |
| YP_002004024.1 | NC_011046_p36 | hypothetical protein | phrog_1825 | DNA methyltransferase | other | -1 | 21274 | 21519 |
| YP_002003989.1 | NC_011046_p1 | phage terminase small subunit | phrog_1437 | terminase small subunit | head and packaging | 1 | 259 | 783 |
| YP_002004023.1 | NC_011046_p35 | hypothetical protein | phrog_1083 | unknown function | unknown function | -1 | 20895 | 21218 |
| YP_002003994.1 | NC_011046_p6 | phage structural protein | phrog_1393 | minor head protein | head and packaging | 1 | 4339 | 5520 |
| YP_002004008.1 | NC_011046_p20 | holin | phrog_1379 | unknown function | unknown function | 1 | 15649 | 16002 |
| YP_002004004.1 | NC_011046_p16 | fiber protein | phrog_1424 | tail protein | tail | 1 | 11966 | 13426 |
| YP_002004005.1 | NC_011046_p17 | hypothetical protein | phrog_1432 | tail associated lysin | tail | 1 | 13426 | 14553 |
| YP_002004036.1 | NC_011046_p48 | hypothetical protein | phrog_7549 | unknown function | unknown function | -1 | 26105 | 26350 |
| YP_002004033.1 | NC_011046_p45 | hypothetical protein | phrog_2228 | unknown function | unknown function | -1 | 24423 | 24803 |
| YP_002004006.1 | NC_011046_p18 | hypothetical protein | phrog_1434 | unknown function | unknown function | 1 | 14543 | 14836 |
| YP_002004002.1 | NC_011046_p14 | hypothetical protein | phrog_1421 | virion structural protein | head and packaging | 1 | 8704 | 9216 |
| YP_002004019.1 | NC_011046_p31 | hypothetical protein | phrog_3365 | unknown function | unknown function | -1 | 19754 | 19942 |
| YP_002004021.1 | NC_011046_p33 | hypothetical protein | phrog_1225 | unknown function | unknown function | -1 | 20460 | 20765 |
| YP_002004025.1 | NC_011046_p37 | hypothetical protein | phrog_10825 | unknown function | unknown function | -1 | 21519 | 21764 |
| YP_002004007.1 | NC_011046_p19 | receptor binding protein | phrog_6465 | tail protein | tail | 1 | 14826 | 15635 |
| YP_002003993.1 | NC_011046_p5 | capsid maturation peptidase | phrog_80 | head maturation protease | head and packaging | 1 | 3810 | 4346 |
| YP_002003997.1 | NC_011046_p9 | phage structural protein | phrog_1484 | virion structural protein | head and packaging | 1 | 6115 | 6456 |
| YP_002004029.1 | NC_011046_p41 | hypothetical protein | phrog_1278 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 22930 | 23289 |
| YP_002004020.1 | NC_011046_p32 | hypothetical protein | phrog_3530 | unknown function | unknown function | -1 | 20021 | 20458 |
| YP_002004032.1 | NC_011046_p44 | hypothetical protein | phrog_1632 | unknown function | unknown function | -1 | 24136 | 24426 |
| YP_002003995.1 | NC_011046_p7 | phage structural protein | phrog_1428 | head-tail connector protein | connector | 1 | 5541 | 5804 |
| YP_002004003.1 | NC_011046_p15 | tail tape measure protein | phrog_58 | tail length tape measure protein | tail | 1 | 9216 | 11966 |
| YP_002004035.1 | NC_011046_p47 | DNA polymerase | phrog_1284 | unknown function | unknown function | -1 | 25110 | 26060 |
| YP_002004030.1 | NC_011046_p42 | hypothetical protein | phrog_659 | Sak-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | -1 | 23294 | 23929 |
| YP_002004022.1 | NC_011046_p34 | hypothetical protein | phrog_1508 | unknown function | unknown function | -1 | 20765 | 20884 |
| YP_002003999.1 | NC_011046_p11 | major structural protein | phrog_1433 | major tail protein | tail | 1 | 6825 | 7730 |
| YP_002004039.1 | NC_011046_p51 | hypothetical protein | phrog_1952 | unknown function | unknown function | 1 | 27682 | 27810 |
| YP_002004040.1 | NC_011046_p52 | hypothetical protein | phrog_1436 | unknown function | unknown function | 1 | 27815 | 27946 |
| YP_002004017.1 | NC_011046_p29 | hypothetical protein | phrog_1820 | unknown function | unknown function | -1 | 19255 | 19443 |
| YP_002004009.1 | NC_011046_p21 | N-acetylmyramoyl amidase | phrog_670 | endolysin | lysis | 1 | 15999 | 16700 |
| YP_002004026.1 | NC_011046_p38 | hypothetical protein | phrog_1919 | unknown function | unknown function | -1 | 21801 | 22115 |
| YP_002004041.1 | NC_011046_p53 | hypothetical protein | phrog_827 | Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 27943 | 28425 |
| YP_002004031.1 | NC_011046_p43 | hypothetical protein | phrog_1449 | unknown function | unknown function | -1 | 23916 | 24323 |
| YP_002004016.1 | NC_011046_p28 | hypothetical protein | phrog_1441 | unknown function | unknown function | -1 | 19058 | 19255 |
| YP_002003991.1 | NC_011046_p3 | HNH endonuclease | phrog_119 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 2396 | 2680 |
| YP_002004027.1 | NC_011046_p39 | hypothetical protein | phrog_1317 | unknown function | unknown function | -1 | 22196 | 22705 |
| YP_002004012.1 | NC_011046_p24 | hypothetical protein | phrog_5152 | unknown function | unknown function | -1 | 17720 | 17968 |
| YP_002003998.1 | NC_011046_p10 | phage structural protein | phrog_1440 | virion structural protein | head and packaging | 1 | 6447 | 6812 |
| YP_002004014.1 | NC_011046_p26 | hypothetical protein | singleton | unknown function | unknown function | -1 | 18255 | 18359 |
| YP_002004038.1 | NC_011046_p50 | hypothetical protein | phrog_1656 | unknown function | unknown function | -1 | 27363 | 27551 |
| YP_002004000.1 | NC_011046_p12 | phage tail structural protein | singleton | unknown function | unknown function | 1 | 7933 | 8388 |
| YP_002004037.1 | NC_011046_p49 | hypothetical protein | phrog_2413 | unknown function | unknown function | -1 | 26866 | 26994 |