| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_011048 |
Definition |
Bacillus phage phi29, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Podoviridae; Picovirinae; Salasvirus. |
DB of origin |
REFSEQ |
Length |
19282 |
Host Name |
Bacillus subtilis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
27 |
%GC |
39.99 |
Number of singletons |
1 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_002004536.1 | NC_011048_p13 | major head protein | phrog_2006 | major head protein | head and packaging | 1 | 5549 | 6895 |
| YP_002004542.1 | NC_011048_p19 | morphogenesis protein | phrog_11037 | unknown function | unknown function | 1 | 13947 | 15041 |
| YP_002004531.1 | NC_011048_p8 | transcriptional regulator | phrog_10365 | late transcriptional activator | transcription regulation | -1 | 3575 | 3952 |
| YP_002004543.1 | NC_011048_p20 | holin | phrog_199 | holin | lysis | 1 | 15060 | 15455 |
| YP_002004530.1 | NC_011048_p7 | terminal protein | phrog_6358 | DNA terminal protein | DNA, RNA and nucleotide metabolism | -1 | 2886 | 3686 |
| YP_002004550.1 | NC_011048_p27 | hypothetical early protein | phrog_22213 | replication protein | DNA, RNA and nucleotide metabolism | -1 | 18580 | 19080 |
| YP_002004545.1 | NC_011048_p22 | DNA encapsidation protein | phrog_2150 | terminase | head and packaging | 1 | 16244 | 17242 |
| YP_002004540.1 | NC_011048_p17 | lower collar protein | phrog_3225 | adaptor Ad4 | connector | 1 | 10477 | 11358 |
| YP_002004528.1 | NC_011048_p5 | hypothetical protein | phrog_27272 | unknown function | unknown function | -1 | 857 | 1117 |
| YP_002004526.1 | NC_011048_p3 | hypothetical protein | phrog_17724 | unknown function | unknown function | -1 | 527 | 703 |
| YP_002004524.1 | NC_011048_p1 | hypothetical protein | singleton | unknown function | unknown function | -1 | 265 | 360 |
| YP_002004548.1 | NC_011048_p25 | hypothetical early protein | phrog_16824 | unknown function | unknown function | -1 | 17938 | 18255 |
| YP_002004549.1 | NC_011048_p26 | hypothetical early protein | phrog_23455 | unknown function | unknown function | -1 | 18252 | 18578 |
| YP_002004529.1 | NC_011048_p6 | DNA polymerase | phrog_1907 | DNA polymerase | DNA, RNA and nucleotide metabolism | -1 | 1145 | 2863 |
| YP_002004535.1 | NC_011048_p12 | scaffolding protein | phrog_10439 | head scaffolding protein | head and packaging | 1 | 5222 | 5518 |
| YP_002004546.1 | NC_011048_p23 | hypothetical early protein | phrog_6422 | Lar-like restriction alleviation protein | moron, auxiliary metabolic gene and host takeover | -1 | 17383 | 17547 |
| YP_002004532.1 | NC_011048_p9 | single stranded DNA-binding protein | phrog_14995 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 3971 | 4345 |
| YP_002004527.1 | NC_011048_p4 | hypothetical protein | phrog_13823 | unknown function | unknown function | -1 | 700 | 870 |
| YP_002004541.1 | NC_011048_p18 | preneck appendage protein | phrog_4775 | pre-neck appendage protein | connector | 1 | 11371 | 13935 |
| YP_002004534.1 | NC_011048_p11 | dsDNA binding protein | phrog_6370 | dsDNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 4607 | 4921 |
| YP_002004539.1 | NC_011048_p16 | upper collar protein | phrog_2038 | upper collar connector | connector | 1 | 9555 | 10484 |
| YP_002004544.1 | NC_011048_p21 | peptidoglycan hydrolase | phrog_380 | endolysin | lysis | 1 | 15457 | 16233 |
| YP_002004533.1 | NC_011048_p10 | hypothetical protein | phrog_26687 | unknown function | unknown function | -1 | 4410 | 4610 |
| YP_002004525.1 | NC_011048_p2 | hypothetical protein | phrog_38052 | unknown function | unknown function | -1 | 367 | 510 |
| YP_002004537.1 | NC_011048_p14 | head fiber protein | phrog_14753 | head fiber protein | head and packaging | 1 | 6895 | 7737 |
| YP_002004547.1 | NC_011048_p24 | hypothetical early protein | phrog_6682 | GP16.7-like replication protein | DNA, RNA and nucleotide metabolism | -1 | 17544 | 17936 |
| YP_002004538.1 | NC_011048_p15 | tail protein | phrog_2248 | tail protein | tail | 1 | 7751 | 9550 |