Genomic map of Bacillus virus phi29 (NC_011048)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_011048
Definition
Bacillus phage phi29, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Podoviridae; Picovirinae; Salasvirus.
DB of origin
REFSEQ
Length
19282
Host Name
Bacillus subtilis
Host domain
Bacteria
Is prophage?
undef
Number of proteins
27
%GC
39.99
Number of singletons
1
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_002004536.1 NC_011048_p13 major head protein phrog_2006 major head protein head and packaging 1 5549 6895
YP_002004542.1 NC_011048_p19 morphogenesis protein phrog_11037 unknown function unknown function 1 13947 15041
YP_002004531.1 NC_011048_p8 transcriptional regulator phrog_10365 late transcriptional activator transcription regulation -1 3575 3952
YP_002004543.1 NC_011048_p20 holin phrog_199 holin lysis 1 15060 15455
YP_002004530.1 NC_011048_p7 terminal protein phrog_6358 DNA terminal protein DNA, RNA and nucleotide metabolism -1 2886 3686
YP_002004550.1 NC_011048_p27 hypothetical early protein phrog_22213 replication protein DNA, RNA and nucleotide metabolism -1 18580 19080
YP_002004545.1 NC_011048_p22 DNA encapsidation protein phrog_2150 terminase head and packaging 1 16244 17242
YP_002004540.1 NC_011048_p17 lower collar protein phrog_3225 adaptor Ad4 connector 1 10477 11358
YP_002004528.1 NC_011048_p5 hypothetical protein phrog_27272 unknown function unknown function -1 857 1117
YP_002004526.1 NC_011048_p3 hypothetical protein phrog_17724 unknown function unknown function -1 527 703
YP_002004524.1 NC_011048_p1 hypothetical protein singleton unknown function unknown function -1 265 360
YP_002004548.1 NC_011048_p25 hypothetical early protein phrog_16824 unknown function unknown function -1 17938 18255
YP_002004549.1 NC_011048_p26 hypothetical early protein phrog_23455 unknown function unknown function -1 18252 18578
YP_002004529.1 NC_011048_p6 DNA polymerase phrog_1907 DNA polymerase DNA, RNA and nucleotide metabolism -1 1145 2863
YP_002004535.1 NC_011048_p12 scaffolding protein phrog_10439 head scaffolding protein head and packaging 1 5222 5518
YP_002004546.1 NC_011048_p23 hypothetical early protein phrog_6422 Lar-like restriction alleviation protein moron, auxiliary metabolic gene and host takeover -1 17383 17547
YP_002004532.1 NC_011048_p9 single stranded DNA-binding protein phrog_14995 single strand DNA binding protein DNA, RNA and nucleotide metabolism -1 3971 4345
YP_002004527.1 NC_011048_p4 hypothetical protein phrog_13823 unknown function unknown function -1 700 870
YP_002004541.1 NC_011048_p18 preneck appendage protein phrog_4775 pre-neck appendage protein connector 1 11371 13935
YP_002004534.1 NC_011048_p11 dsDNA binding protein phrog_6370 dsDNA binding protein DNA, RNA and nucleotide metabolism -1 4607 4921
YP_002004539.1 NC_011048_p16 upper collar protein phrog_2038 upper collar connector connector 1 9555 10484
YP_002004544.1 NC_011048_p21 peptidoglycan hydrolase phrog_380 endolysin lysis 1 15457 16233
YP_002004533.1 NC_011048_p10 hypothetical protein phrog_26687 unknown function unknown function -1 4410 4610
YP_002004525.1 NC_011048_p2 hypothetical protein phrog_38052 unknown function unknown function -1 367 510
YP_002004537.1 NC_011048_p14 head fiber protein phrog_14753 head fiber protein head and packaging 1 6895 7737
YP_002004547.1 NC_011048_p24 hypothetical early protein phrog_6682 GP16.7-like replication protein DNA, RNA and nucleotide metabolism -1 17544 17936
YP_002004538.1 NC_011048_p15 tail protein phrog_2248 tail protein tail 1 7751 9550